TomoSeq data search

Data search

Results for MligTC455_26675

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_26675

366

7.62

Mlig455_053857

Neo: -

Age: Up-Down-Up

NR1I2

Mlig455_053857 {REF} {Length: 4215} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=78.8]} {Human: ENSG00000144852, NR1I2, nuclear receptor subfamily 1 group I member 2, [Score=118, Expect=8e-29]; ENSG00000025434, NR1H3, nuclear receptor subfamily 1 group H member 3, [Score=115, Expect=2e-27]} {Mouse: ENSMUSG00000022479, Vdr, vitamin D (1,25-dihydroxyvitamin D3) receptor, [Score=113, Expect=5e-27]; ENSMUSG00000002108, Nr1h3, nuclear receptor subfamily 1, group H, member 3, [Score=110, Expect=8e-26]} {Dmel: FBgn0015240, Hr96, Hormone receptor-like in 96, [Score=120, Expect=9e-29]} {Celegans: WBGene00000908, daf-12, Nuclear hormone receptor family member daf-12, [Score=124, Expect=4e-30]} {Smed: dd_Smed_v6_11714_0_1, dd_Smed_v6_11714_0_1, [Score=117, Expect=2e-28]} {RNA1509_34134} {RNA1310_13527} {RNA815_6207}

Cumulative graph for MligTC455_26675

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.877	3.541	0.13314	0.73240
RegionR2	0.51	3.541	0.43109	0.82120
RegionR3	1.281	3.541	0.00353	0.07549
RegionR4	-0.643	3.541	0.23827	0.53372
RegionR5	0.547	3.541	0.17260	0.44362
RegionR6	1.152	3.541	0.01098	0.17858
RegionR7	-0.76	3.541	0.31628	0.95088
RegionR8	-0.209	3.541	0.82341	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.186	3.541	0.47389	1.00000
RegenerationR2	-0.919	3.541	0.14462	0.57602
RegenerationR3	-0.708	3.541	0.18835	0.62360
RegenerationR4	-0.157	3.541	0.78528	0.98244
RegenerationR5	-0.376	3.541	0.44146	0.82574
RegenerationR6	-0.283	3.541	0.59527	0.86622
RegenerationBL	0.088	3.541	0.91630	1.00000
RegenerationTP	-0.3	3.541	0.75427	1.00000

Genes with expression patterns similar to MligTC455_26675

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_26675	366	7.62	Mlig455_053857	Neo: - Age: Up-Down-Up	NR1I2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_053857 {REF} {Length: 4215} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=78.8]} {Human: ENSG00000144852, NR1I2, nuclear receptor subfamily 1 group I member 2, [Score=118, Expect=8e-29]; ENSG00000025434, NR1H3, nuclear receptor subfamily 1 group H member 3, [Score=115, Expect=2e-27]} {Mouse: ENSMUSG00000022479, Vdr, vitamin D (1,25-dihydroxyvitamin D3) receptor, [Score=113, Expect=5e-27]; ENSMUSG00000002108, Nr1h3, nuclear receptor subfamily 1, group H, member 3, [Score=110, Expect=8e-26]} {Dmel: FBgn0015240, Hr96, Hormone receptor-like in 96, [Score=120, Expect=9e-29]} {Celegans: WBGene00000908, daf-12, Nuclear hormone receptor family member daf-12, [Score=124, Expect=4e-30]} {Smed: dd_Smed_v6_11714_0_1, dd_Smed_v6_11714_0_1, [Score=117, Expect=2e-28]} {RNA1509_34134} {RNA1310_13527} {RNA815_6207}
2.	MligTC455_53356	1170	24.37	Mlig455_033344, Mlig455_033363	Neo: - Age: - Region-enriched R4: 2.114/0.00122 Region-enriched R5: 1.062/0.04423	TMED7	3.4	0.875	0.743	-	-	0.952	0.830	Mlig455_033344 {REF} {Length: 1935} {Pfam: emp24/gp25L/p24 family/GOLD [PF01105.26, score=115.7]} {Human: ENSG00000134970, TMED7, transmembrane p24 trafficking protein 7, [Score=110, Expect=2e-29]} {Mouse: ENSMUSG00000033184, Tmed7, transmembrane p24 trafficking protein 7, [Score=110, Expect=3e-29]} {Dmel: FBgn0030341, p24-1, p24-related-1, [Score=116, Expect=6e-32]} {Celegans: WBGene00019003, F57B10.5, [Score=97.8, Expect=5e-25]} {Smed: dd_Smed_v6_2557_0_1, dd_Smed_v6_2557_0_1, [Score=98.2, Expect=4e-25]} {RNA1509_14712} {RNA1310_32912, RNA1509_14712} {RNA1509_14712, RNA815_16911} Mlig455_033363 {REF} {Length: 1946} {Pfam: emp24/gp25L/p24 family/GOLD [PF01105.26, score=115.8]} {Human: ENSG00000134970, TMED7, transmembrane p24 trafficking protein 7, [Score=110, Expect=2e-29]} {Mouse: ENSMUSG00000033184, Tmed7, transmembrane p24 trafficking protein 7, [Score=110, Expect=2e-29]} {Dmel: FBgn0030341, p24-1, p24-related-1, [Score=114, Expect=2e-31]} {Celegans: WBGene00019003, F57B10.5, [Score=97.4, Expect=8e-25]} {Smed: dd_Smed_v6_2557_0_1, dd_Smed_v6_2557_0_1, [Score=98.6, Expect=3e-25]} {RNA1509_14712} {RNA1310_32912} {RNA815_16911}
3.	MligTC455_53355	1190	24.78	Mlig455_033338, Mlig455_033357	Neo: - Age: - Region-enriched R4: 1.851/0.00149		2.675	0.890	-	-	-	0.954	0.831	Mlig455_033338 {REF} {Length: 1291} {RNA1509_14712, RNA1509_46611} {RNA1310_36401.2, RNA1509_46611} {RNA1509_46611, RNA815_17710} Mlig455_033357 {REF} {Length: 973} {TRANSSPLICED} {RNA1509_14712} {RNA1310_36401.2} {RNA815_17710}
4.	MligTC455_18887	333	6.93	Mlig455_045886	Neo: - Age: - Region-enriched R3: 2.872/0.03772	HRASLS	1.757	-	-	-	-	0.962	0.795	Mlig455_045886 {REF} {Length: 1499} {Pfam: Lecithin retinol acyltransferase [PF04970.15, score=47.0]; PPPDE putative peptidase domain [PF05903.16, score=19.7]} {Human: ENSG00000127252, HRASLS, HRAS like suppressor, [Score=48.5, Expect=5e-06]} {Celegans: WBGene00009460, ubr-5, UBR E3 ubiquitin ligase homolog, [Score=51.2, Expect=6e-07]} {RNA1509_26414} {RNA1310_26632.1, RNA1509_26414} {RNA1509_26414, RNA815_21681}
5.	MligTC455_19570	96	2	Mlig455_003840	Neo: - Age: - Region-enriched R4: 3.687/0.03464 Region-enriched R5: 2.746/0.04909	CRYZ	1.692	-	-	0.726	-	-	0.966	Mlig455_003840 {REF} {Length: 1513} {TRANSSPLICED} {Pfam: Zinc-binding dehydrogenase [PF00107.28, score=65.4]; Zinc-binding dehydrogenase [PF13602.8, score=55.6]; Alcohol dehydrogenase GroES-like domain [PF08240.14, score=32.3]} {Human: ENSG00000116791, CRYZ, crystallin zeta, [RH, Score=288, Expect=1e-95]} {Mouse: ENSMUSG00000028199, Cryz, crystallin, zeta, [RH, Score=293, Expect=4e-98]} {Dmel: FBgn0033883, CG16935, [RH, Score=68.9, Expect=9e-13]} {Celegans: WBGene00009554, F39B2.3, [RH, Score=218, Expect=1e-68]} {Smed: dd_Smed_v6_2717_0_1, dd_Smed_v6_2717_0_1, [RH, Score=253, Expect=9e-83]} {RNA1509_24531} {RNA1310_28792.1, RNA1509_24531} {RNA1509_24531, RNA815_12373.1}
6.	MligTC455_26795	815	16.98	Mlig455_032453	Neo: - Age: logFC(26M/2M)=1.207 Region-enriched R4: 1.778/0.04706		1.691	-	-	-	-	0.954	0.737	Mlig455_032453 {REF} {Length: 1116} {NoTransDecoderORF} {RNA1509_2515} {RNA1310_26891} {RNA815_3258.1}
7.	MligTC455_35650	2002	41.7	Mlig455_046752	Neo: - Age: -	CALR	0.976	-	-	-	-	0.976	-	Mlig455_046752 {REF} {Length: 1713} {Pfam: Calreticulin family [PF00262.20, score=28.8]} {Human: ENSG00000179218, CALR, calreticulin, [Score=98.2, Expect=1e-25]} {Mouse: ENSMUSG00000003814, Calr, calreticulin, [Score=87.0, Expect=6e-20]} {Dmel: FBgn0005585, Calr, Calreticulin, [Score=102, Expect=8e-26]} {Celegans: WBGene00000802, crt-1, Calreticulin, [Score=79.7, Expect=1e-17]} {Smed: dd_Smed_v6_220_0_4, dd_Smed_v6_220_0_4, [Score=115, Expect=1e-30]} {RNA1509_1668} {RNA1310_7869} {RNA815_3522.1}
8.	MligTC455_11013	203	4.22	Mlig455_010455	Neo: - Age: - Region-enriched R2: 3.244/0.03731		0.967	-	-	-	-	-	0.967	Mlig455_010455 {REF} {Length: 1483} {RNA1310_22199.1} {RNA815_10412}
9.	MligTC455_46606	232	4.84	Mlig455_011865	Neo: - Age: -	TXNDC17	0.967	-	-	-	-	0.967	-	Mlig455_011865 {REF} {Length: 1259} {TRANSSPLICED} {Pfam: Eukaryotic protein of unknown function (DUF953) [PF06110.13, score=102.3]; Thioredoxin [PF00085.22, score=26.4]} {Human: ENSG00000129235, TXNDC17, thioredoxin domain containing 17, [RH, Score=69.3, Expect=8e-16]} {Mouse: ENSMUSG00000020803, Txndc17, thioredoxin domain containing 17, [RH, Score=73.6, Expect=1e-17]} {Dmel: FBgn0000318, cl, clot, [RH, Score=73.6, Expect=1e-17]} {Celegans: WBGene00022188, Y71H2AR.1, [RH, Score=59.7, Expect=2e-12]} {Smed: dd_Smed_v6_2482_0_1, dd_Smed_v6_2482_0_1, [RH, Score=88.2, Expect=1e-23]} {RNA1509_8547} {RNA1310_27459} {RNA815_11946.1}
10.	MligTC455_52073	1651	34.4	Mlig455_021526	Neo: Neoblast, stringent Age: Down-Up-Up, logFC(26M/2M)=0.373	EBNA1BP2	0.962	-	-	-	-	0.962	-	Mlig455_021526 {REF} {Length: 1654} {TRANSSPLICED} {Pfam: Eukaryotic rRNA processing protein EBP2 [PF05890.14, score=228.6]} {Human: ENSG00000117395, EBNA1BP2, EBNA1 binding protein 2, [RH, Score=145, Expect=7e-41]} {Mouse: ENSMUSG00000028729, Ebna1bp2, EBNA1 binding protein 2, [RH, Score=149, Expect=2e-42]} {Dmel: FBgn0039828, CG1542, [RH, Score=114, Expect=2e-29]} {Celegans: WBGene00015941, C18A3.3, Probable rRNA-processing protein EBP2 homolog, [RH, Score=113, Expect=1e-28]} {Smed: dd_Smed_v6_5945_0_1, dd_Smed_v6_5945_0_1, [RH, Score=99.0, Expect=2e-24]} {RNA1509_36264, RNA1509_4962} {RNA1310_18974, RNA1509_36264, RNA1509_4962} {RNA1509_36264, RNA1509_4962, RNA815_15170}
11.	MligTC455_51057	721	15.03	Mlig455_001327	Neo: - Age: - Region-enriched R4: 1.518/0.00027		0.961	-	-	-	-	0.961	-	Mlig455_001327 {REF} {Length: 1262} {TRANSSPLICED} {RNA1509_27293} {RNA1310_18620.1} {RNA815_14772.1}
12.	MligTC455_35437	351	7.32	Mlig455_052908	Neo: Int S/G2/M Age: Down-Up-Up	PAK1IP1	0.95	-	-	-	-	0.950	-	Mlig455_052908 {REF} {Length: 1694} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=60.7]} {Human: ENSG00000285226, PAK1IP1, PAK1 interacting protein 1, [RH, Score=125, Expect=9e-32]; ENSG00000111845, PAK1IP1, PAK1 interacting protein 1, [RH, Score=125, Expect=9e-32]} {Mouse: ENSMUSG00000038683, Pak1ip1, PAK1 interacting protein 1, [RH, Score=124, Expect=1e-31]} {Dmel: FBgn0030630, CG12608, [RH, Score=73.9, Expect=5e-14]} {Celegans: WBGene00013862, wdr-5.3, WD repeat-containing protein wdr-5.3, [Score=65.5, Expect=2e-11]} {Smed: dd_Smed_v6_5139_0_1, dd_Smed_v6_5139_0_1, [Score=52.4, Expect=1e-07]} {RNA1509_19705, RNA1509_53597} {RNA1310_19924, RNA1509_53597} {RNA1509_53597, RNA815_8952}

Berezikov Lab - 2020-2021 © ERIBA