TomoSeq data search

Data search

Results for MligTC455_27191

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_27191

87

1.81

Mlig455_069613

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.833

Region-enriched R2: 4.460/0.00883

RNF213

Mlig455_069613 {REF} {Length: 9312} {Pfam: AAA domain (dynein-related subfamily) [PF07728.16, score=52.4]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=48.5]; P-loop containing dynein motor region [PF12775.9, score=35.6]; Sigma-54 interaction domain [PF14532.8, score=23.5]; AAA ATPase domain [PF13191.8, score=22.0]; ATPase domain predominantly from Archaea [PF01637.20, score=21.6]; ABC transporter [PF00005.29, score=20.0]; AAA domain [PF13401.8, score=19.1]} {Human: ENSG00000173821, RNF213, ring finger protein 213, [Score=402, Expect=1e-111]} {Mouse: ENSMUSG00000070327, Rnf213, ring finger protein 213, [Score=380, Expect=6e-105]} {RNA1509_3638, RNA1509_52214} {RNA1310_14.1, RNA1509_52214} {RNA1509_52214, RNA815_16.1}

Cumulative graph for MligTC455_27191

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-8.119	1.935	0.03190	0.45365
RegionR2	4.46	1.935	0.00029	0.00883
RegionR3	1.404	1.935	0.20947	0.75087
RegionR4	-2.341	1.935	0.99951	1.00000
RegionR5	-1.166	1.935	0.99360	1.00000
RegionR6	0.91	1.935	0.44827	1.00000
RegionR7	1.774	1.935	0.20284	0.81178
RegionR8	3.079	1.935	0.04288	0.40597

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	2.687	1.935	0.99984	1.00000
RegenerationR2	-1.118	1.935	0.20372	0.65044
RegenerationR3	-1.411	1.935	0.20601	0.64106
RegenerationR4	-2.374	1.935	0.04593	0.34614
RegenerationR5	-0.602	1.935	0.48687	0.85062
RegenerationR6	-0.632	1.935	0.53841	0.83200
RegenerationBL	-6.393	1.935	0.00920	0.09576
RegenerationTP	-5.618	1.935	0.01397	0.20232

Genes with expression patterns similar to MligTC455_27191

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_27191	87	1.81	Mlig455_069613	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.833 Region-enriched R2: 4.460/0.00883	RNF213	4	1.000	1.000	1.000	-	1.000	-	Mlig455_069613 {REF} {Length: 9312} {Pfam: AAA domain (dynein-related subfamily) [PF07728.16, score=52.4]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=48.5]; P-loop containing dynein motor region [PF12775.9, score=35.6]; Sigma-54 interaction domain [PF14532.8, score=23.5]; AAA ATPase domain [PF13191.8, score=22.0]; ATPase domain predominantly from Archaea [PF01637.20, score=21.6]; ABC transporter [PF00005.29, score=20.0]; AAA domain [PF13401.8, score=19.1]} {Human: ENSG00000173821, RNF213, ring finger protein 213, [Score=402, Expect=1e-111]} {Mouse: ENSMUSG00000070327, Rnf213, ring finger protein 213, [Score=380, Expect=6e-105]} {RNA1509_3638, RNA1509_52214} {RNA1310_14.1, RNA1509_52214} {RNA1509_52214, RNA815_16.1}
2.	MligTC455_16148	198	4.12	Mlig455_057689	Neo: - Age: -	KLHDC8A	2.477	-	0.728	0.789	-	0.960	-	Mlig455_057689 {REF} {Length: 1806} {Pfam: Kelch motif [PF13964.8, score=56.9]; Kelch motif [PF01344.27, score=52.7]; Kelch motif [PF07646.17, score=37.5]; Galactose oxidase, central domain [PF13418.8, score=35.1]; Kelch motif [PF13854.8, score=27.6]} {Human: ENSG00000162873, KLHDC8A, kelch domain containing 8A, [Score=58.5, Expect=2e-09]} {Mouse: ENSMUSG00000042115, Klhdc8a, kelch domain containing 8A, [Score=63.9, Expect=1e-10]} {Smed: dd_Smed_v6_14507_0_1, dd_Smed_v6_14507_0_1, [RH, Score=209, Expect=4e-63]} {RNA1509_58319} {RNA1310_20213} {RNA815_8052}
3.	MligTC455_29073	88	1.84	Mlig455_029132, Mlig455_040198	Neo: - Age: -		1.751	0.798	-	-	-	0.953	-	Mlig455_029132 {REF} {Length: 2937} {NoTransDecoderORF} {RNA1509_45811} {RNA1310_50362} {RNA815_3257.3} Mlig455_040198 {REF} {Length: 1035} {NoTransDecoderORF} {RNA1509_25000} {RNA1310_4307.1} {RNA815_2326}
4.	MligTC455_54034	260	5.41	Mlig455_017202	Neo: - Age: - Region-enriched R8: 2.476/0.02915	CALML3	1.739	0.785	-	-	-	0.954	-	Mlig455_017202 {REF} {Length: 1789} {Pfam: EF hand [PF00036.34, score=86.0]; EF-hand domain pair [PF13499.8, score=75.1]; EF hand [PF13202.8, score=71.2]; EF-hand domain [PF13405.8, score=67.8]; EF-hand domain pair [PF13833.8, score=53.5]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=19.0]} {Human: ENSG00000178363, CALML3, calmodulin like 3, [Score=82.8, Expect=1e-20]; ENSG00000198668, CALM1, calmodulin 1, [Score=79.7, Expect=2e-19]; ENSG00000160014, CALM3, calmodulin 3, [Score=79.7, Expect=2e-19]; ENSG00000143933, CALM2, calmodulin 2, [Score=79.7, Expect=2e-19]} {Mouse: ENSMUSG00000063130, Calml3, calmodulin-like 3, [Score=81.6, Expect=3e-20]; ENSMUSG00000036438, Calm2, calmodulin 2, [Score=79.7, Expect=1e-19]; ENSMUSG00000001175, Calm1, calmodulin 1, [Score=79.7, Expect=1e-19]; ENSMUSG00000019370, Calm3, calmodulin 3, [Score=79.7, Expect=1e-19]} {Dmel: FBgn0000253, Cam, Calmodulin, [Score=77.8, Expect=6e-19]} {Celegans: WBGene00000552, cmd-1, Calmodulin, [Score=77.8, Expect=5e-19]} {Smed: dd_Smed_v6_255_0_1, dd_Smed_v6_255_0_1, [Score=77.8, Expect=4e-19]} {RNA1509_40737} {RNA1310_63281, RNA1509_40737} {RNA1509_40737, RNA815_19875}
5.	MligTC455_13773	101	2.1	Mlig455_010827	Neo: - Age: -		0.966	-	-	-	-	0.966	-	Mlig455_010827 {REF} {Length: 304} {NoTransDecoderORF} {RNA1509_22845} {RNA1310_11632} {RNA815_10000}
6.	MligTC455_30177	188	3.91	Mlig455_046030, Mlig455_055304	Neo: - Age: logFC(26M/2M)=0.649	MAP3K4	0.966	-	-	0.966	-	-	-	Mlig455_046030 {REF} {Length: 2487} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=31.6]; Ankyrin repeats (many copies) [PF13637.8, score=29.2]; Ankyrin repeat [PF13606.8, score=25.1]; Ankyrin repeat [PF00023.32, score=23.0]; Ankyrin repeats (many copies) [PF13857.8, score=22.6]} {RNA1509_38221} {RNA1310_31472} {RNA815_6977.1} Mlig455_055304 {REF} {Length: 3739} {Pfam: Protein kinase domain [PF00069.27, score=161.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=116.9]; Ankyrin repeats (3 copies) [PF12796.9, score=78.6]; Ankyrin repeat [PF13606.8, score=52.4]; Ankyrin repeats (many copies) [PF13637.8, score=51.0]; Ankyrin repeats (many copies) [PF13857.8, score=49.9]; Ankyrin repeat [PF00023.32, score=45.3]; Fungal protein kinase [PF17667.3, score=23.9]; ABC1 atypical kinase-like domain [PF03109.18, score=19.1]; Phosphotransferase enzyme family [PF01636.25, score=18.6]} {Human: ENSG00000085511, MAP3K4, mitogen-activated protein kinase kinase kinase 4, [Score=132, Expect=6e-31]; ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=131, Expect=1e-31]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=130, Expect=1e-31]; ENSMUSG00000014426, Map3k4, mitogen-activated protein kinase kinase kinase 4, [Score=127, Expect=9e-30]} {Dmel: FBgn0024329, Mekk1, [Score=122, Expect=3e-28]} {Celegans: WBGene00003472, mtk-1, MTK1/MEKK4 homolog, [Score=129, Expect=1e-30]} {Smed: dd_Smed_v6_2030_0_13, dd_Smed_v6_2030_0_13, [Score=118, Expect=3e-28]} {RNA1509_38221} {RNA1310_10050, RNA1509_38221} {RNA1509_38221, RNA815_9449.1}
7.	MligTC455_35046	485	10.1	Mlig455_067666	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.340 Region-enriched R8: 2.605/0.02555 Region-enriched R2: 2.499/0.01493	PDE2A	0.964	-	-	-	-	0.964	-	Mlig455_067666 {REF} {Length: 5187} {Pfam: 3'5'-cyclic nucleotide phosphodiesterase [PF00233.21, score=237.1]; GAF domain [PF01590.28, score=63.4]; GAF domain [PF13492.8, score=25.2]} {Human: ENSG00000186642, PDE2A, phosphodiesterase 2A, [RH, Score=718, Expect=0.0]} {Mouse: ENSMUSG00000030653, Gm45837, predicted gene 45837, [RH, Score=713, Expect=0.0]; ENSMUSG00000110195, Pde2a, phosphodiesterase 2A, cGMP-stimulated, [RH, Score=713, Expect=0.0]} {Dmel: FBgn0085370, Pde11, Phosphodiesterase 11, [Score=325, Expect=2e-95]} {Celegans: WBGene00011146, pde-2, Probable 3',5'-cyclic phosphodiesterase pde-2, [RH, Score=334, Expect=7e-101]} {Smed: dd_Smed_v6_8589_0_2, dd_Smed_v6_8589_0_2, [RH, Score=817, Expect=0.0]} {RNA1509_5437} {RNA1310_2713.4} {RNA815_1901.1}
8.	MligTC455_27372	49	1.02	Mlig455_036854	Neo: - Age: -	ANK2	0.963	-	-	-	-	0.963	-	Mlig455_036854 {REF} {Length: 4696} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=152.6]; Ankyrin repeat [PF00023.32, score=108.0]; Ankyrin repeats (many copies) [PF13637.8, score=100.4]; Ankyrin repeat [PF13606.8, score=84.9]; Ankyrin repeats (many copies) [PF13857.8, score=82.8]; Mab-21 protein [PF03281.16, score=26.1]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=148, Expect=3e-35]; ENSG00000151150, ANK3, ankyrin 3, [Score=145, Expect=2e-34]; ENSG00000029534, ANK1, ankyrin 1, [Score=144, Expect=7e-34]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=143, Expect=9e-34]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=139, Expect=2e-32]; ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=136, Expect=1e-31]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=150, Expect=3e-36]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=143, Expect=5e-34]} {Smed: dd_Smed_v6_10835_0_2, dd_Smed_v6_10835_0_2, [Score=157, Expect=1e-38]} {RNA1509_49840} {RNA1310_35067, RNA1509_49840} {RNA1509_49840, RNA815_2400.1}
9.	MligTC455_33143	37	0.77	Mlig455_008293	Neo: - Age: Down-Down-Up Regeneration-upregulated R2: 5.573 Regeneration-enriched R2: 5.573	NPHS1	0.963	-	-	-	-	0.963	-	Mlig455_008293 {REF} {Length: 4631} {Pfam: Immunoglobulin domain [PF13927.8, score=123.9]; Immunoglobulin I-set domain [PF07679.18, score=85.0]; Immunoglobulin domain [PF13895.8, score=73.9]; Immunoglobulin domain [PF00047.27, score=56.6]; Immunoglobulin V-set domain [PF07686.19, score=38.3]; CD80-like C2-set immunoglobulin domain [PF08205.14, score=24.8]} {Human: ENSG00000161270, NPHS1, NPHS1, nephrin, [Score=74.7, Expect=1e-12]} {Mouse: ENSMUSG00000022762, Ncam2, neural cell adhesion molecule 2, [Score=82.8, Expect=2e-15]} {Dmel: FBgn0029082, hbs, hibris, [Score=127, Expect=5e-29]} {Celegans: WBGene00018215, igcm-1, ImmunoGlobulin-like Cell adhesion Molecule family, [Score=63.2, Expect=1e-09]} {Smed: dd_Smed_v6_16056_0_1, dd_Smed_v6_16056_0_1, [Score=76.3, Expect=1e-13]} {RNA1509_15216} {RNA1310_1630} {RNA815_12733}
10.	MligTC455_13329	95	1.98	Mlig455_009198	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-1.124		0.958	-	-	-	-	0.958	-	Mlig455_009198 {REF} {Length: 2007} {RNA1509_22077, RNA1509_32545} {RNA1310_29047.1, RNA1509_22077, RNA1509_32545} {RNA1509_22077, RNA1509_32545, RNA815_17550}
11.	MligTC455_16305	45	0.93	Mlig455_005717	Neo: - Age: -		0.958	-	-	-	-	0.958	-	Mlig455_005717 {REF} {Length: 1504} {Pfam: Protein of unknown function (DUF4532) [PF15046.8, score=28.1]} {RNA1310_54208} {RNA815_57875}
12.	MligTC455_08700	37	0.77	Mlig455_031782	Neo: - Age: Up-Down-Down		0.954	-	-	-	-	0.954	-	Mlig455_031782 {REF} {Length: 2366} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_51813, RNA1509_6571} {RNA1310_585.1, RNA1509_51813, RNA1509_6571} {RNA1509_51813, RNA1509_6571, RNA815_122.1}
13.	MligTC455_38859	28	0.59	Mlig455_071137	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_071137 {REF} {Length: 409} {NoTransDecoderORF} {RNA1509_22707} {RNA1310_90313} {RNA815_24119.1}
14.	MligTC455_09059	61	1.27	Mlig455_023612, Mlig455_033807	Neo: - Age: -		0.951	-	-	-	-	0.951	-	Mlig455_023612 {REF} {Length: 346} {NoTransDecoderORF} {RNA1509_57341} {RNA1310_49037} {RNA815_24538} Mlig455_033807 {REF} {Length: 314} {NoTransDecoderORF} {RNA1509_43209} {RNA1310_49037} {RNA815_24538}
15.	MligTC455_24630	962	20.04	Mlig455_067759	Neo: - Age: -		0.95	-	-	-	-	0.950	-	Mlig455_067759 {REF} {Length: 5477} {Pfam: RhoGEF domain [PF00621.22, score=30.3]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=21.0]} {RNA1509_7176} {RNA1310_1343.1} {RNA815_2798}
16.	MligTC455_46324	175	3.66	Mlig455_056638	Neo: - Age: -	PAM	0.95	-	-	-	-	0.950	-	Mlig455_056638 {REF} {Length: 4766} {Pfam: Copper type II ascorbate-dependent monooxygenase, N-terminal domain [PF01082.22, score=52.9]; Copper type II ascorbate-dependent monooxygenase, C-terminal domain [PF03712.17, score=52.6]} {Human: ENSG00000145730, PAM, peptidylglycine alpha-amidating monooxygenase, [Score=105, Expect=1e-23]} {Mouse: ENSMUSG00000026335, Pam, peptidylglycine alpha-amidating monooxygenase, [Score=102, Expect=6e-23]} {Dmel: FBgn0283509, Phm, Peptidylglycine-alpha-hydroxylating monooxygenase, [Score=108, Expect=3e-26]} {Celegans: WBGene00022144, pghm-1, Probable peptidylglycine alpha-hydroxylating monooxygenase 1, [Score=88.6, Expect=2e-19]} {Smed: dd_Smed_v6_2646_0_1, dd_Smed_v6_2646_0_1, [Score=118, Expect=1e-29]} {RNA1509_54159} {RNA1310_19370, RNA1509_54159} {RNA1509_54159, RNA815_7199}

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