M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27352

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27352 306 6.37 Mlig455_018411

Neo: -

Age: Up-Down-Down

 Mlig455_018411 {REF} {Length: 4225} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=51.7]} {RNA1509_12873, RNA1509_20908, RNA1509_31975, RNA1509_3317} {RNA1310_1684, RNA1509_12873, RNA1509_20908, RNA1509_31975, RNA1509_3317} {RNA1509_12873, RNA1509_20908, RNA1509_31975, RNA1509_3317, RNA815_1380.1}

Cumulative graph for MligTC455_27352

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.224 3.083 0.91298 1.00000
RegionR2 -0.727 3.083 0.30288 0.69295
RegionR3 -0.165 3.083 0.77005 1.00000
RegionR4 1.146 3.083 0.04390 0.17667
RegionR5 -0.213 3.083 0.68254 1.00000
RegionR6 0.242 3.083 0.64498 1.00000
RegionR7 0.232 3.083 0.77205 1.00000
RegionR8 -0.292 3.083 0.80126 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 1.895 3.083 0.37474 1.00000
RegenerationR2 -0.86 3.083 0.13626 0.56340
RegenerationR3 0.556 3.083 0.25749 0.69215
RegenerationR4 -0.186 3.083 0.67991 0.94570
RegenerationR5 0.733 3.083 0.07807 0.43574
RegenerationR6 0.613 3.083 0.19006 0.52784
RegenerationBL 1.127 3.083 0.08089 0.33231
RegenerationTP -0.341 3.083 0.71829 1.00000


Genes with expression patterns similar to MligTC455_27352

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27352 306 6.37 Mlig455_018411

Neo: -

Age: Up-Down-Down

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_018411 {REF} {Length: 4225} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=51.7]} {RNA1509_12873, RNA1509_20908, RNA1509_31975, RNA1509_3317} {RNA1310_1684, RNA1509_12873, RNA1509_20908, RNA1509_31975, RNA1509_3317} {RNA1509_12873, RNA1509_20908, RNA1509_31975, RNA1509_3317, RNA815_1380.1}
2. MligTC455_27350 318 6.63 Mlig455_022459

Neo: -

Age: -

 4.955 1.000 0.999 0.973 0.996 0.987 - Mlig455_022459 {REF} {Length: 3884} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=51.8]; Phage integrase family [PF00589.24, score=37.0]; Phage integrase, N-terminal SAM-like domain [PF13495.8, score=23.8]; Phage integrase, N-terminal SAM-like domain [PF02899.19, score=22.4]} {RNA1509_3317} {RNA1310_1684} {RNA815_1380.1}
3. MligTC455_27353 301 6.27 Mlig455_029175

Neo: -

Age: -

 4.951 0.999 0.972 0.998 0.993 0.989 - Mlig455_029175 {REF} {Length: 2029} {RNA1509_3317} {RNA1310_25634} {RNA815_29979}
4. MligTC455_27351 1543 32.14 Mlig455_007719, Mlig455_007731, Mlig455_007795, Mlig455_030241, Mlig455_049949

Neo: -

Age: Up-Down-Up

Region-enriched R4: 1.562/0.00310

 4.951 0.994 0.988 0.990 0.984 0.995 -

Mlig455_007719 {REF} {Length: 2707} {RNA1509_3317} {RNA1310_62948} {RNA815_10362}

Mlig455_007731 {REF} {Length: 2116} {RNA1509_3317} {RNA1310_62948} {RNA815_10362}

Mlig455_007795 {REF} {Length: 1099} {RNA1509_3317} {RNA1310_62948} {RNA815_10362}

Mlig455_030241 {REF} {Length: 1042} {NoTransDecoderORF} {RNA1509_3317} {RNA1310_25634} {RNA815_64980}

Mlig455_049949 {REF} {Length: 4272} {RNA1509_11404} {RNA1310_20514.1} {RNA815_31978}
5. MligTC455_27354 408 8.51 Mlig455_034723

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=3.039

Region-enriched R4: 1.949/0.00472

 ANK1 4.569 - 0.999 0.914 0.892 0.976 0.788 Mlig455_034723 {REF} {Length: 3143} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=284.6]; Ankyrin repeats (many copies) [PF13637.8, score=221.3]; Ankyrin repeat [PF00023.32, score=211.5]; Ankyrin repeat [PF13606.8, score=177.4]; Ankyrin repeats (many copies) [PF13857.8, score=159.1]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=49.0]; Phage integrase family [PF00589.24, score=35.0]; Phage integrase, N-terminal SAM-like domain [PF13495.8, score=22.6]; Phage integrase, N-terminal SAM-like domain [PF02899.19, score=19.0]} {Human: ENSG00000029534, ANK1, ankyrin 1, [Score=269, Expect=8e-72]; ENSG00000151150, ANK3, ankyrin 3, [Score=258, Expect=2e-68]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=259, Expect=3e-69]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=256, Expect=7e-68]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=252, Expect=2e-67]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=271, Expect=2e-72]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=265, Expect=5e-71]} {Smed: dd_Smed_v6_2072_0_2, dd_Smed_v6_2072_0_2, [Score=261, Expect=8e-70]} {RNA1509_3317} {RNA1310_18753} {RNA815_1380.1}
6. MligTC455_35745 3964 82.58 Mlig455_060880

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.298

 TECR 1.765 - - - 0.956 0.809 - Mlig455_060880 {REF} {Length: 1263} {TRANSSPLICED} {Pfam: 3-oxo-5-alpha-steroid 4-dehydrogenase [PF02544.18, score=94.2]} {Human: ENSG00000099797, TECR, trans-2,3-enoyl-CoA reductase, [RH, Score=334, Expect=1e-114]} {Mouse: ENSMUSG00000031708, Tecr, trans-2,3-enoyl-CoA reductase, [RH, Score=330, Expect=2e-113]} {Dmel: FBgn0035471, Sc2, [RH, Score=345, Expect=4e-119]} {Celegans: WBGene00000198, art-1, Probable very-long-chain enoyl-CoA reductase art-1, [RH, Score=334, Expect=6e-115]} {Smed: dd_Smed_v6_2085_0_1, dd_Smed_v6_2085_0_1, [RH, Score=333, Expect=6e-115]} {RNA1509_18659, RNA1509_19947, RNA1509_33959, RNA1509_37614, RNA1509_9226} {RNA1310_26993, RNA1509_18659, RNA1509_19947, RNA1509_33959, RNA1509_37614, RNA1509_9226} {RNA1509_18659, RNA1509_19947, RNA1509_33959, RNA1509_37614, RNA1509_9226, RNA815_11767}
7. MligTC455_40759 13602 283.38 Mlig455_013817, Mlig455_025277, Mlig455_025306

Neo: Int S/G2/M

Age: Up-Down-Up, logFC(26M/2M)=1.165

Region-enriched R4: 1.084/0.00608

 MAP3K7, RPL17 1.654 - - - 0.952 0.702 -

Mlig455_013817 {REF} {Length: 2509} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=96.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=59.9]; Glycine rich protein [PF12810.9, score=36.2]; PAN domain [PF00024.28, score=19.6]} {Human: ENSG00000135341, MAP3K7, mitogen-activated protein kinase kinase kinase 7, [Score=79.7, Expect=6e-15]} {Mouse: ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=79.7, Expect=4e-15]} {Dmel: FBgn0026323, Tak1, TGF-beta activated kinase 1, [Score=83.6, Expect=3e-16]} {Celegans: WBGene00013643, Y105C5A.24, [Score=76.6, Expect=2e-14]} {Smed: dd_Smed_v6_2589_0_2, dd_Smed_v6_2589_0_2, [Score=75.1, Expect=4e-14]} {RNA1310_58716} {RNA815_41741}

Mlig455_025277 {REF} {Length: 763} {TRANSSPLICED} {Pfam: Ribosomal protein L22p/L17e [PF00237.21, score=132.1]} {Human: ENSG00000265681, RPL17, ribosomal protein L17, [RH, Score=245, Expect=2e-83]; ENSG00000215472, RPL17-C18orf32, RPL17-C18orf32 readthrough, [RH, Score=241, Expect=6e-81]} {Mouse: ENSMUSG00000062328, Rpl17, ribosomal protein L17, [RH, Score=239, Expect=4e-81]} {Dmel: FBgn0029897, RpL17, Ribosomal protein L17, [RH, Score=239, Expect=2e-81]} {Celegans: WBGene00004429, rpl-17, 60S ribosomal protein L17, [RH, Score=243, Expect=1e-82]} {Smed: dd_Smed_v6_95_0_1, dd_Smed_v6_95_0_1, [RH, Score=242, Expect=2e-82]} {RNA1509_624} {RNA1310_48024, RNA1509_624} {RNA1509_624, RNA815_9325}

Mlig455_025306 {REF} {Length: 750} {TRANSSPLICED} {Pfam: Ribosomal protein L22p/L17e [PF00237.21, score=132.1]} {Human: ENSG00000265681, RPL17, ribosomal protein L17, [RH, Score=245, Expect=2e-83]; ENSG00000215472, RPL17-C18orf32, RPL17-C18orf32 readthrough, [RH, Score=241, Expect=6e-81]} {Mouse: ENSMUSG00000062328, Rpl17, ribosomal protein L17, [RH, Score=239, Expect=4e-81]} {Dmel: FBgn0029897, RpL17, Ribosomal protein L17, [RH, Score=239, Expect=2e-81]} {Celegans: WBGene00004429, rpl-17, 60S ribosomal protein L17, [RH, Score=243, Expect=1e-82]} {Smed: dd_Smed_v6_95_0_1, dd_Smed_v6_95_0_1, [RH, Score=242, Expect=2e-82]} {RNA1509_624} {RNA1310_48024} {RNA815_9325}
8. MligTC455_49113 8318 173.3 Mlig455_018424

Neo: -

Age: -

Regeneration-upregulated BL: 1.412

Regeneration-enriched BL: 1.412

 HADHA 0.975 - - - 0.975 - - Mlig455_018424 {REF} {Length: 2972} {TRANSSPLICED} {Pfam: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain [PF02737.20, score=193.1]; Enoyl-CoA hydratase/isomerase [PF00378.22, score=134.0]; 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain [PF00725.24, score=106.5]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=74.7]} {Human: ENSG00000084754, HADHA, hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha, [RH, Score=831, Expect=0.0]} {Mouse: ENSMUSG00000025745, Hadha, hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit, [RH, Score=813, Expect=0.0]} {Dmel: FBgn0028479, Mtpalpha, Mitochondrial trifunctional protein alpha subunit, [RH, Score=822, Expect=0.0]} {Celegans: WBGene00020347, ech-1.2, Enoyl-CoA Hydratase, [RH, Score=752, Expect=0.0]} {Smed: dd_Smed_v6_863_0_1, dd_Smed_v6_863_0_1, [RH, Score=888, Expect=0.0]} {RNA1509_430, RNA1509_6723} {RNA1310_5592.1, RNA1509_430, RNA1509_6723} {RNA1509_430, RNA1509_6723, RNA815_1687.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA