M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27710

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27710 431 8.97 Mlig455_033197

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.296

 Mlig455_033197 {REF} {Length: 3196} {TRANSSPLICED} {RNA1509_32482} {RNA1310_12605} {RNA815_5670}

Cumulative graph for MligTC455_27710

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.341 3.478 0.25277 0.90025
RegionR2 -0.518 3.478 0.31404 0.70520
RegionR3 -0.894 3.478 0.04524 0.37207
RegionR4 0.606 3.478 0.27148 0.57731
RegionR5 0.117 3.478 0.76526 1.00000
RegionR6 -0.388 3.478 0.37251 0.95315
RegionR7 -0.312 3.478 0.58417 1.00000
RegionR8 0.049 3.478 0.94562 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -7.696 3.478 0.04673 0.68511
RegenerationR2 -0.367 3.478 0.39990 0.81434
RegenerationR3 -0.125 3.478 0.80635 0.98406
RegenerationR4 -0.712 3.478 0.17155 0.60860
RegenerationR5 -0.271 3.478 0.54640 0.88370
RegenerationR6 -1.006 3.478 0.06541 0.32135
RegenerationBL 0.047 3.478 0.93732 1.00000
RegenerationTP -0.542 3.478 0.40824 0.83532


Genes with expression patterns similar to MligTC455_27710

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27710 431 8.97 Mlig455_033197

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.296

 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_033197 {REF} {Length: 3196} {TRANSSPLICED} {RNA1509_32482} {RNA1310_12605} {RNA815_5670}
2. MligTC455_21348 1648 34.33 Mlig455_040767, Mlig455_064600

Neo: -

Age: -

 GNPNAT1 1.684 - - - 0.733 0.951 -

Mlig455_040767 {REF} {Length: 2277} {Pfam: Acetyltransferase (GNAT) family [PF00583.27, score=44.9]; Acetyltransferase (GNAT) domain [PF13673.9, score=30.1]; Acetyltransferase (GNAT) domain [PF13508.9, score=25.5]} {Human: ENSG00000100522, GNPNAT1, glucosamine-phosphate N-acetyltransferase 1, [RH, Score=114, Expect=3e-31]} {Mouse: ENSMUSG00000037722, Gnpnat1, glucosamine-phosphate N-acetyltransferase 1, [RH, Score=108, Expect=3e-29]} {Dmel: FBgn0039690, CG1969, [RH, Score=144, Expect=2e-42]} {Celegans: WBGene00001647, gna-2, Glucosamine phosphate N-Acetyl transferase; Phosphoglucosamine acetyltransferase, [RH, Score=124, Expect=4e-34]} {Smed: dd_Smed_v6_7188_0_1, dd_Smed_v6_7188_0_1, [RH, Score=111, Expect=2e-29]} {RNA1509_11013} {RNA1310_26288} {RNA815_11358}

Mlig455_064600 {REF} {Length: 1288} {TRANSSPLICED} {Pfam: Acetyltransferase (GNAT) family [PF00583.27, score=44.9]; Acetyltransferase (GNAT) domain [PF13673.9, score=30.1]; Acetyltransferase (GNAT) domain [PF13508.9, score=25.5]} {Human: ENSG00000100522, GNPNAT1, glucosamine-phosphate N-acetyltransferase 1, [RH, Score=114, Expect=3e-31]} {Mouse: ENSMUSG00000037722, Gnpnat1, glucosamine-phosphate N-acetyltransferase 1, [RH, Score=108, Expect=3e-29]} {Dmel: FBgn0039690, CG1969, [RH, Score=144, Expect=2e-42]} {Celegans: WBGene00001647, gna-2, Glucosamine phosphate N-Acetyl transferase; Phosphoglucosamine acetyltransferase, [RH, Score=124, Expect=4e-34]} {Smed: dd_Smed_v6_7188_0_1, dd_Smed_v6_7188_0_1, [RH, Score=111, Expect=2e-29]} {RNA1509_11013, RNA1509_15264} {RNA1310_26288, RNA1509_11013, RNA1509_15264} {RNA1509_11013, RNA1509_15264, RNA815_11358}
3. MligTC455_39387 365 7.6 Mlig455_015798

Neo: -

Age: Up-Down-Up

 0.971 - - - 0.971 - - Mlig455_015798 {REF} {Length: 1414} {Pfam: YadA-like membrane anchor domain [PF03895.17, score=29.7]; HMW1 domain 2 [PF18254.3, score=25.8]; Domain of unknown function (DUF1943) [PF09172.13, score=20.6]; Protein of unknown function (DUF2490) [PF10677.11, score=19.0]} {RNA1509_57018} {RNA1310_63174.1} {RNA815_31174}
4. MligTC455_39374 552 11.49 Mlig455_045541

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.275

 0.969 - - - - 0.969 - Mlig455_045541 {REF} {Length: 4721} {RNA1509_9151} {RNA1310_2304} {RNA815_15356}
5. MligTC455_39388 350 7.3 Mlig455_045762

Neo: Int S/G2/M

Age: -

 DCUN1D3 0.969 - - - 0.969 - - Mlig455_045762 {REF} {Length: 5466} {TRANSSPLICED} {Pfam: Cullin binding [PF03556.17, score=101.6]} {Human: ENSG00000188215, DCUN1D3, defective in cullin neddylation 1 domain containing 3, [RH, Score=155, Expect=7e-45]} {Mouse: ENSMUSG00000048787, Dcun1d3, DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae), [RH, Score=155, Expect=9e-45]} {Dmel: FBgn0033784, SCCRO3, Squamous cell carcinoma-related oncogene 3, [Score=139, Expect=1e-38]} {Celegans: WBGene00010428, dcn-1, Defective in cullin neddylation protein 1, [Score=101, Expect=2e-25]} {Smed: dd_Smed_v6_3227_0_1, dd_Smed_v6_3227_0_1, [Score=85.5, Expect=3e-19]} {RNA1509_31859} {RNA1310_26103} {RNA815_28933}
6. MligTC455_04649 148 3.09 Mlig455_012005

Neo: -

Age: Down-Up-Down

 0.96 - - - 0.960 - - Mlig455_012005 {REF} {Length: 1172} {TRANSSPLICED} {Pfam: Protein of unknown function (DUF1294) [PF06961.15, score=49.9]; Protein of unknown function (DUF3813) [PF12758.9, score=19.2]} {RNA1509_24502} {RNA1310_39703} {RNA815_42023}
7. MligTC455_30976 103 2.15 Mlig455_018549

Neo: -

Age: -

 0.952 - - - - 0.952 - Mlig455_018549 {REF} {Length: 1926} {TRANSSPLICED} {RNA1509_46251} {RNA1310_15142, RNA1509_46251} {RNA1509_46251, RNA815_6031}
8. MligTC455_45283 303 6.32 Mlig455_001036

Neo: -

Age: -

 0.951 - - - - 0.951 - Mlig455_001036 {REF} {Length: 1698} {TRANSSPLICED} {Pfam: Tetratricopeptide repeat [PF13424.8, score=43.1]; Tetratricopeptide repeat [PF00515.30, score=26.8]; Tetratricopeptide repeat [PF13374.8, score=22.7]; Tetratricopeptide repeat [PF07719.19, score=21.2]} {RNA1509_50264, RNA1509_52648} {RNA1310_23457.1, RNA1509_50264, RNA1509_52648} {RNA1509_50264, RNA1509_52648, RNA815_20633}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA