M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27760

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27760 33 0.69 Mlig455_013826, Mlig455_056115

Neo: -

Age: -

Mlig455_013826 {REF} {Length: 126} {NoTransDecoderORF}

Mlig455_056115 {REF} {Length: 6547} {RNA1509_23004, RNA1509_50524} {RNA1310_13243, RNA1509_50524} {RNA1509_50524, RNA815_20132}

Cumulative graph for MligTC455_27760

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.467 0.98 0.99988 1.00000
RegionR2 -1.018 0.98 0.66544 0.99586
RegionR3 -1.048 0.98 0.99987 1.00000
RegionR4 3.576 0.98 0.01205 0.07017
RegionR5 -0.564 0.98 0.99983 1.00000
RegionR6 -1.668 0.98 0.99984 1.00000
RegionR7 -0.929 0.98 0.99987 1.00000
RegionR8 0.185 0.98 0.99982 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.907 0.98 0.99995 1.00000
RegenerationR2 1.827 0.98 0.16238 0.59962
RegenerationR3 1.203 0.98 0.36055 0.77706
RegenerationR4 -0.794 0.98 0.46469 0.84997
RegenerationR5 2.298 0.98 0.09022 0.46197
RegenerationR6 2.279 0.98 0.22091 0.56522
RegenerationBL 2.519 0.98 0.21651 0.56257
RegenerationTP 2.497 0.98 0.37779 0.81326


Genes with expression patterns similar to MligTC455_27760

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27760 33 0.69 Mlig455_013826, Mlig455_056115

Neo: -

Age: -

 3 - - - 1.000 1.000 1.000

Mlig455_013826 {REF} {Length: 126} {NoTransDecoderORF}

Mlig455_056115 {REF} {Length: 6547} {RNA1509_23004, RNA1509_50524} {RNA1310_13243, RNA1509_50524} {RNA1509_50524, RNA815_20132}
2. MligTC455_35825 173 3.6 Mlig455_037159

Neo: -

Age: -

Region-enriched R8: 2.519/0.03499

 AJM1 1.725 - - - 0.957 0.768 - Mlig455_037159 {REF} {Length: 7148} {Pfam: MYND finger [PF01753.20, score=19.8]} {Human: ENSG00000232434, AJM1, apical junction component 1 homolog, [Score=74.7, Expect=1e-12]} {Mouse: ENSMUSG00000029419, Ajm1, apical junction component 1, [Score=79.3, Expect=4e-14]} {Dmel: FBgn0261802, CG42748, [Score=63.2, Expect=2e-09]} {RNA1509_7980} {RNA1310_3656, RNA1509_7980} {RNA1509_7980, RNA815_1390}
3. MligTC455_20838 235 4.89 Mlig455_022987

Neo: -

Age: -

 H6PD 1.7 - - - 0.959 0.741 - Mlig455_022987 {REF} {Length: 2684} {TRANSSPLICED} {Pfam: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase [PF01182.22, score=105.1]; Glucose-6-phosphate dehydrogenase, C-terminal domain [PF02781.18, score=96.2]; Glucose-6-phosphate dehydrogenase, NAD binding domain [PF00479.24, score=82.3]} {Human: ENSG00000049239, H6PD, hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase, [Score=210, Expect=1e-56]} {Mouse: ENSMUSG00000028980, H6pd, hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase), [Score=222, Expect=5e-61]} {Dmel: FBgn0004057, Zw, Zwischenferment, [Score=142, Expect=3e-35]} {Celegans: WBGene00007108, gspd-1, Glucose-6-phosphate 1-dehydrogenase, [Score=133, Expect=1e-32]} {Smed: dd_Smed_v6_2965_0_1, dd_Smed_v6_2965_0_1, [Score=132, Expect=2e-32]} {RNA1509_16416} {RNA1310_9105, RNA1509_16416} {RNA1509_16416, RNA815_2264.1}
4. MligTC455_51066 526 10.97 Mlig455_044665, Mlig455_044724

Neo: -

Age: Down-Up-Down

Region-enriched R8: 5.381/0.00000

 0.989 - - - 0.989 - -

Mlig455_044665 {REF} {Length: 1268} {Smed: dd_Smed_v6_7581_0_1, dd_Smed_v6_7581_0_1, [Score=148, Expect=3e-41]} {RNA1310_47069.2} {RNA815_30975}

Mlig455_044724 {REF} {Length: 1327} {Smed: dd_Smed_v6_7581_0_1, dd_Smed_v6_7581_0_1, [Score=148, Expect=3e-41]} {RNA1310_47069.2} {RNA815_30975}
5. MligTC455_11993 50 1.05 Mlig455_009030

Neo: -

Age: -

 VWDE 0.974 - - - 0.974 - - Mlig455_009030 {REF} {Length: 3150} {Pfam: EGF-like domain [PF07974.15, score=63.1]; Human growth factor-like EGF [PF12661.9, score=50.6]; Agrin NtA domain [PF03146.17, score=41.8]; Thrombospondin type 1 domain [PF00090.21, score=39.6]; EGF-like domain [PF00008.29, score=33.0]; Thrombospondin type 1 domain [PF19030.2, score=23.9]} {Human: ENSG00000146530, VWDE, von Willebrand factor D and EGF domains, [RH, Score=121, Expect=9e-28]; ENSG00000156076, WIF1, WNT inhibitory factor 1, [RH, Score=119, Expect=2e-28]} {Mouse: ENSMUSG00000079679, Vwde, von Willebrand factor D and EGF domains, [RH, Score=135, Expect=2e-32]} {Dmel: FBgn0003390, shf, shifted, [RH, Score=102, Expect=7e-23]} {Celegans: WBGene00011326, T01D3.1, [Score=92.8, Expect=4e-19]} {Smed: dd_Smed_v6_20318_0_1, dd_Smed_v6_20318_0_1, [RH, Score=228, Expect=2e-65]} {RNA1509_42369} {RNA1310_21266} {RNA815_29273}
6. MligTC455_13446 40 0.83 Mlig455_021008

Neo: -

Age: -

 0.972 - - - 0.972 - - Mlig455_021008 {REF} {Length: 2021} {RNA1310_30009} {RNA815_25427}
7. MligTC455_33432 59 1.23 Mlig455_047130, Mlig455_049075

Neo: -

Age: -

 0.971 - - - 0.971 - -

Mlig455_047130 {REF} {Length: 683} {Pfam: Protein of unknown function (FYDLN_acid) [PF09538.12, score=19.5]} {RNA1509_52826} {RNA1310_267.1} {RNA815_381.1}

Mlig455_049075 {REF} {Length: 2317} {Pfam: Transcriptional Coactivator p15 (PC4) [PF02229.18, score=34.7]} {RNA1509_13203} {RNA1310_267.2} {RNA815_381.1}
8. MligTC455_06849 8 0.18 Mlig455_042939

Neo: -

Age: -

 SNX9 0.961 - - - - - 0.961 Mlig455_042939 {REF} {Length: 1246} {Human: ENSG00000130340, SNX9, sorting nexin 9, [Score=44.3, Expect=1e-05]; ENSG00000178996, SNX18, sorting nexin 18, [Score=44.3, Expect=1e-05]} {Mouse: ENSMUSG00000002365, Snx9, sorting nexin 9, [Score=47.0, Expect=7e-07]; ENSMUSG00000042364, Snx18, sorting nexin 18, [Score=45.1, Expect=3e-06]} {Celegans: WBGene00003086, lst-4, Sorting nexin lst-4, [Score=46.2, Expect=7e-07]} {RNA1509_19079, RNA1509_43251} {RNA1310_26760, RNA1509_19079, RNA1509_43251} {RNA1509_19079, RNA1509_43251, RNA815_24893}
9. MligTC455_25517 301 6.28 Mlig455_036413

Neo: -

Age: Up-Down-Up

 0.96 - - - 0.960 - - Mlig455_036413 {REF} {Length: 1873} {RNA1509_52708} {RNA1310_4011} {RNA815_18281.1}
10. MligTC455_30705 104 2.16 Mlig455_039638, Mlig455_044760, Mlig455_071020

Neo: Irradiation

Age: -

 ASH2L 0.958 - - - 0.958 - -

Mlig455_039638 {REF} {Length: 3151} {TRANSSPLICED} {Pfam: SPRY domain [PF00622.30, score=57.1]; Caspase domain [PF00656.24, score=28.5]; PHD-finger [PF00628.31, score=21.6]} {Human: ENSG00000129691, ASH2L, ASH2 like, histone lysine methyltransferase complex subunit, [RH, Score=415, Expect=2e-137]} {Mouse: ENSMUSG00000031575, Ash2l, ASH2 like histone lysine methyltransferase complex subunit, [RH, Score=418, Expect=1e-137]} {Dmel: FBgn0000139, ash2, absent, small, or homeotic discs 2, [RH, Score=460, Expect=5e-155]} {Celegans: WBGene00012458, ash-2, Set1/Ash2 histone methyltransferase complex subunit ash-2, [RH, Score=303, Expect=3e-94]} {Smed: dd_Smed_v6_4609_0_1, dd_Smed_v6_4609_0_1, [RH, Score=509, Expect=5e-174]} {RNA1509_19525, RNA1509_59886} {RNA1310_10213, RNA1509_59886} {RNA1509_59886, RNA815_6956}

Mlig455_044760 {REF} {Length: 723} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=23.3]} {Human: ENSG00000129691, ASH2L, ASH2 like, histone lysine methyltransferase complex subunit, [Score=97.4, Expect=1e-23]} {Mouse: ENSMUSG00000031575, Ash2l, ASH2 like histone lysine methyltransferase complex subunit, [Score=97.4, Expect=7e-24]} {Dmel: FBgn0000139, ash2, absent, small, or homeotic discs 2, [Score=123, Expect=3e-33]} {Celegans: WBGene00012458, ash-2, Set1/Ash2 histone methyltransferase complex subunit ash-2, [Score=68.9, Expect=4e-14]} {Smed: dd_Smed_v6_4609_0_1, dd_Smed_v6_4609_0_1, [Score=164, Expect=3e-48]} {RNA1509_59886} {RNA1310_10213} {RNA815_6956}

Mlig455_071020 {REF} {Length: 886} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=23.3]} {Human: ENSG00000129691, ASH2L, ASH2 like, histone lysine methyltransferase complex subunit, [Score=97.4, Expect=1e-23]} {Mouse: ENSMUSG00000031575, Ash2l, ASH2 like histone lysine methyltransferase complex subunit, [Score=97.4, Expect=7e-24]} {Dmel: FBgn0000139, ash2, absent, small, or homeotic discs 2, [Score=123, Expect=3e-33]} {Celegans: WBGene00012458, ash-2, Set1/Ash2 histone methyltransferase complex subunit ash-2, [Score=68.9, Expect=4e-14]} {Smed: dd_Smed_v6_4609_0_1, dd_Smed_v6_4609_0_1, [Score=164, Expect=3e-48]} {RNA1509_59886} {RNA1310_10213} {RNA815_6956}
11. MligTC455_30995 24 0.5 Mlig455_028102

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_028102 {REF} {Length: 905} {TRANSSPLICED} {Smed: dd_Smed_v6_29621_0_1, dd_Smed_v6_29621_0_1, [Score=64.3, Expect=2e-13]} {RNA1509_9219} {RNA1310_468} {RNA815_355.1}
12. MligTC455_50909 122 2.54 Mlig455_046070, Mlig455_046077

Neo: -

Age: -

 0.958 - - - 0.958 - -

Mlig455_046070 {REF} {Length: 923} {TRANSSPLICED} {RNA1509_43265} {RNA1310_50592, RNA1509_43265} {RNA1509_43265, RNA815_29810.1}

Mlig455_046077 {REF} {Length: 916} {TRANSSPLICED} {RNA1509_43265} {RNA1310_50592} {RNA815_29810.1}
13. MligTC455_25516 623 12.97 Mlig455_036379, Mlig455_054584

Neo: -

Age: -

 0.951 - - - 0.951 - -

Mlig455_036379 {REF} {Length: 3088} {RNA1509_28479, RNA1509_52708} {RNA1310_4011, RNA1509_52708} {RNA1509_52708, RNA815_18281.1}

Mlig455_054584 {REF} {Length: 3410} {RNA1509_28479} {RNA1310_4011} {RNA815_18281.1}
14. MligTC455_29747 19 0.39 Mlig455_006327

Neo: -

Age: logFC(26M/2M)=-0.608

 ANKRD50 0.951 - - - 0.951 - - Mlig455_006327 {REF} {Length: 3274} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=48.4]; Ankyrin repeats (3 copies) [PF12796.9, score=43.5]; Ankyrin repeats (many copies) [PF13857.8, score=43.5]; Mab-21 protein [PF03281.16, score=39.2]; Ankyrin repeat [PF13606.8, score=37.0]; Ankyrin repeat [PF00023.32, score=34.3]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=67.4, Expect=1e-10]; ENSG00000170921, TANC2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=66.6, Expect=2e-10]} {Mouse: ENSMUSG00000078487, Ankrd65, ankyrin repeat domain 65, [Score=68.9, Expect=8e-12]; ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=68.2, Expect=4e-11]; ENSMUSG00000053580, Tanc2, tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, [Score=66.6, Expect=1e-10]} {Dmel: FBgn0039590, CG10011, [Score=62.4, Expect=2e-09]} {Celegans: WBGene00011240, R11A8.7, Ankyrin repeat and KH domain-containing protein R11A8.7, [Score=53.5, Expect=7e-07]} {Smed: dd_Smed_v6_12936_0_1, dd_Smed_v6_12936_0_1, [Score=63.5, Expect=4e-10]} {RNA1509_27730} {RNA1310_4721} {RNA815_2426.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA