M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27773

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27773 237 4.93 Mlig455_051946

Neo: -

Age: Down-Up-Down

 API5 Mlig455_051946 {REF} {Length: 2741} {Pfam: Apoptosis inhibitory protein 5 (API5) [PF05918.13, score=253.6]} {Human: ENSG00000166181, API5, apoptosis inhibitor 5, [Score=213, Expect=2e-61]} {Mouse: ENSMUSG00000027193, Api5, apoptosis inhibitor 5, [Score=215, Expect=1e-62]} {Dmel: FBgn0027885, Aac11, [Score=177, Expect=3e-48]} {Smed: dd_Smed_v6_2384_0_1, dd_Smed_v6_2384_0_1, [Score=78.6, Expect=2e-15]} {RNA1509_35278} {RNA1310_7287, RNA1509_35278} {RNA1509_35278, RNA815_3751.1}

Cumulative graph for MligTC455_27773

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.54 2.697 0.35587 0.99895
RegionR2 1.801 2.697 0.03400 0.21115
RegionR3 0.666 2.697 0.33897 0.87531
RegionR4 -1.307 2.697 0.08499 0.27590
RegionR5 0.046 2.697 0.94548 1.00000
RegionR6 0.909 2.697 0.16912 0.72614
RegionR7 -0.522 2.697 0.58485 1.00000
RegionR8 -0.053 2.697 0.97458 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.37 2.697 0.59389 1.00000
RegenerationR2 -0.759 2.697 0.35294 0.78348
RegenerationR3 0.209 2.697 0.79296 0.98001
RegenerationR4 0.359 2.697 0.64904 0.93289
RegenerationR5 0.357 2.697 0.61413 0.91614
RegenerationR6 0.224 2.697 0.76502 0.95875
RegenerationBL 1.169 2.697 0.22991 0.58064
RegenerationTP -0.162 2.697 0.89260 1.00000


Genes with expression patterns similar to MligTC455_27773

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27773 237 4.93 Mlig455_051946

Neo: -

Age: Down-Up-Down

 API5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_051946 {REF} {Length: 2741} {Pfam: Apoptosis inhibitory protein 5 (API5) [PF05918.13, score=253.6]} {Human: ENSG00000166181, API5, apoptosis inhibitor 5, [Score=213, Expect=2e-61]} {Mouse: ENSMUSG00000027193, Api5, apoptosis inhibitor 5, [Score=215, Expect=1e-62]} {Dmel: FBgn0027885, Aac11, [Score=177, Expect=3e-48]} {Smed: dd_Smed_v6_2384_0_1, dd_Smed_v6_2384_0_1, [Score=78.6, Expect=2e-15]} {RNA1509_35278} {RNA1310_7287, RNA1509_35278} {RNA1509_35278, RNA815_3751.1}
2. MligTC455_34753 496 10.34 Mlig455_046304, Mlig455_046973

Neo: -

Age: -

 1.817 - 0.859 0.958 - - -

Mlig455_046304 {REF} {Length: 2524} {NoTransDecoderORF} {RNA1310_14864} {RNA815_13607}

Mlig455_046973 {REF} {Length: 2092} {NoTransDecoderORF} {RNA1310_14864} {RNA815_13607}
3. MligTC455_25374 428 8.91 Mlig455_036389, Mlig455_036390, Mlig455_036391, Mlig455_054557

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.690

Regeneration-upregulated BL: 5.459

Regeneration-enriched BL: 5.459

 1.776 - - 0.954 - - 0.822

Mlig455_036389 {REF} {Length: 860} {NoTransDecoderORF} {RNA1509_40044} {RNA1310_33232} {RNA815_16463}

Mlig455_036390 {REF} {Length: 5024} {RNA1509_54862} {RNA1310_31416} {RNA815_5170.1}

Mlig455_036391 {REF} {Length: 3445} {RNA1509_54862} {RNA1310_31416} {RNA815_5170.1}

Mlig455_054557 {REF} {Length: 6330} {RNA1509_54862} {RNA1310_31416} {RNA815_5170.1}
4. MligTC455_36157 164 3.42 Mlig455_062160

Neo: -

Age: logFC(26M/2M)=0.397

Region-enriched R7: 2.742/0.03749

 MGAT1 0.977 0.977 - - - - - Mlig455_062160 {REF} {Length: 4260} {TRANSSPLICED} {Pfam: GNT-I family [PF03071.17, score=445.8]} {Human: ENSG00000131446, MGAT1, mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, [RH, Score=384, Expect=8e-130]} {Mouse: ENSMUSG00000020346, Mgat1, mannoside acetylglucosaminyltransferase 1, [RH, Score=395, Expect=3e-134]} {Dmel: FBgn0034521, Mgat1, Mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase 1, [RH, Score=362, Expect=1e-121]} {Celegans: WBGene00001639, gly-14, GLYcosylation related; UDP-N-acetylglucosamine:a-3-D-mannoside b-1,2-N-acetylglucosaminyltransferase I, [RH, Score=272, Expect=9e-87]} {Smed: dd_Smed_v6_13024_0_1, dd_Smed_v6_13024_0_1, [RH, Score=290, Expect=3e-94]} {RNA1509_22955, RNA1509_32456} {RNA1310_10208, RNA1509_22955, RNA1509_32456} {RNA1509_22955, RNA1509_32456, RNA815_15402}
5. MligTC455_03600 172 3.59 Mlig455_031645

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.335

 NIT2 0.974 - - 0.974 - - - Mlig455_031645 {REF} {Length: 967} {TRANSSPLICED} {Pfam: Carbon-nitrogen hydrolase [PF00795.24, score=210.9]} {Human: ENSG00000114021, NIT2, nitrilase family member 2, [RH, Score=306, Expect=2e-104]} {Mouse: ENSMUSG00000022751, Nit2, nitrilase family, member 2, [RH, Score=308, Expect=4e-105]} {Dmel: FBgn0037687, CG8132, [RH, Score=271, Expect=8e-91]} {Celegans: WBGene00003594, nft-1, Nitrilase and fragile histidine triad fusion protein NitFhit Bis(5'-adenosyl)-triphosphatase Nitrilase homolog, [Score=156, Expect=2e-44]} {Smed: dd_Smed_v6_1734_0_1, dd_Smed_v6_1734_0_1, [RH, Score=263, Expect=7e-88]} {RNA1509_7842} {RNA1310_13706.2, RNA1509_7842} {RNA1509_7842, RNA815_18016}
6. MligTC455_28637 506 10.55 Mlig455_063018

Neo: -

Age: -

 PHKA1 0.974 - 0.974 - - - - Mlig455_063018 {REF} {Length: 6578} {TRANSSPLICED} {Pfam: Glycosyl hydrolases family 15 [PF00723.23, score=255.7]} {Human: ENSG00000067177, PHKA1, phosphorylase kinase regulatory subunit alpha 1, [Score=583, Expect=0.0]; ENSG00000044446, PHKA2, phosphorylase kinase regulatory subunit alpha 2, [Score=573, Expect=0.0]} {Mouse: ENSMUSG00000031295, Phka2, phosphorylase kinase alpha 2, [Score=587, Expect=0.0]; ENSMUSG00000034055, Phka1, phosphorylase kinase alpha 1, [Score=582, Expect=0.0]} {Dmel: FBgn0030087, CG7766, [Score=623, Expect=0.0]} {Celegans: WBGene00015754, C14B9.8, Probable phosphorylase b kinase regulatory subunit alpha, [Score=506, Expect=2e-164]} {Smed: dd_Smed_v6_6919_0_1, dd_Smed_v6_6919_0_1, [Score=627, Expect=0.0]} {RNA1509_9598} {RNA1310_11507} {RNA815_11489}
7. MligTC455_35918 88 1.84 Mlig455_014115, Mlig455_017871

Neo: -

Age: -

 0.97 - - 0.970 - - -

Mlig455_014115 {REF} {Length: 495} {NoTransDecoderORF} {RNA1509_55603} {RNA1310_2284.3} {RNA815_7655.1}

Mlig455_017871 {REF} {Length: 2843} {RNA1509_6226} {RNA1310_15973} {RNA815_15474}
8. MligTC455_09957 222 4.63 Mlig455_013085

Neo: -

Age: -

Region-enriched R3: 2.181/0.04013

 SLC5A8 0.968 - - 0.968 - - - Mlig455_013085 {REF} {Length: 3769} {Pfam: Sodium:solute symporter family [PF00474.19, score=121.3]} {Human: ENSG00000256870, SLC5A8, solute carrier family 5 member 8, [Score=318, Expect=1e-99]; ENSG00000262217, SLC5A8, solute carrier family 5 member 8, [Score=318, Expect=1e-99]} {Mouse: ENSMUSG00000020062, Slc5a8, solute carrier family 5 (iodide transporter), member 8, [Score=319, Expect=5e-100]} {Dmel: FBgn0034494, CG10444, [Score=280, Expect=1e-85]} {Celegans: WBGene00014092, ZK822.5, [Score=217, Expect=2e-62]} {Smed: dd_Smed_v6_14173_0_1, dd_Smed_v6_14173_0_1, [Score=257, Expect=2e-77]} {RNA1509_54739} {RNA1310_11168, RNA1509_54739} {RNA1509_54739, RNA815_11120.1}
9. MligTC455_12246 99 2.06 Mlig455_019154

Neo: -

Age: Down-Up-Down

 0.968 - - 0.968 - - - Mlig455_019154 {REF} {Length: 1143} {TRANSSPLICED} {RNA1509_36850, RNA1509_7400} {RNA1310_49234, RNA1509_36850} {RNA1509_36850, RNA815_19043.1}
10. MligTC455_30735 56 1.16 Mlig455_020871, Mlig455_020917

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.331

 0.964 - - 0.964 - - -

Mlig455_020871 {REF} {Length: 2556} {RNA1509_14810} {RNA1310_13569.1} {RNA815_6042.1}

Mlig455_020917 {REF} {Length: 2926} {RNA1509_14810} {RNA1310_13569.1} {RNA815_6042.1}
11. MligTC455_15828 52 1.09 Mlig455_069315

Neo: -

Age: Down-Up-Down

 NOG 0.961 - - 0.961 - - - Mlig455_069315 {REF} {Length: 2237} {Pfam: Noggin [PF05806.14, score=105.4]} {Human: ENSG00000183691, NOG, noggin, [RH, Score=87.8, Expect=3e-20]} {Mouse: ENSMUSG00000048616, Nog, noggin, [RH, Score=87.8, Expect=2e-20]} {Smed: dd_Smed_v6_15423_0_1, dd_Smed_v6_15423_0_1, [RH, Score=119, Expect=1e-32]} {RNA1310_31637} {RNA815_28948}
12. MligTC455_12743 107 2.24 Mlig455_039861

Neo: -

Age: logFC(26M/2M)=0.596

Region-enriched R2: 5.013/0.00238

 PHRF1 0.96 - - - - 0.960 - Mlig455_039861 {REF} {Length: 2094} {TRANSSPLICED} {Human: ENSG00000070047, PHRF1, PHD and ring finger domains 1, [Score=68.6, Expect=7e-12]; ENSG00000274780, PHRF1, PHD and ring finger domains 1, [Score=68.6, Expect=7e-12]} {Mouse: ENSMUSG00000038611, Phrf1, PHD and ring finger domains 1, [Score=68.2, Expect=6e-12]} {Dmel: FBgn0037344, CG2926, [Score=61.2, Expect=6e-10]} {Smed: dd_Smed_v6_5142_0_1, dd_Smed_v6_5142_0_1, [RH, Score=89.0, Expect=3e-19]} {RNA1509_14891} {RNA1310_3964.1} {RNA815_13171}
13. MligTC455_22161 244 5.08 Mlig455_017677

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_017677 {REF} {Length: 2923} {TRANSSPLICED} {RNA1509_57595} {RNA1310_32922.1} {RNA815_17242.2}
14. MligTC455_45827 391 8.15 Mlig455_038859

Neo: -

Age: -

 AARS2 0.959 - - - - - 0.959 Mlig455_038859 {REF} {Length: 2888} {Pfam: tRNA synthetases class II (A) [PF01411.21, score=150.5]; Threonyl and Alanyl tRNA synthetase second additional domain [PF07973.16, score=23.5]} {Human: ENSG00000124608, AARS2, alanyl-tRNA synthetase 2, mitochondrial, [Score=234, Expect=1e-64]} {Mouse: ENSMUSG00000023938, Aars2, alanyl-tRNA synthetase 2, mitochondrial, [Score=245, Expect=1e-68]} {Dmel: FBgn0027094, AlaRS, Alanyl-tRNA synthetase, [Score=229, Expect=3e-63]} {Celegans: WBGene00000197, aars-2, Alanine--tRNA ligase, cytoplasmic, [Score=210, Expect=8e-57]} {Smed: dd_Smed_v6_4233_0_1, dd_Smed_v6_4233_0_1, [Score=221, Expect=1e-60]} {RNA1509_11036} {RNA1310_3138.1} {RNA815_933}
15. MligTC455_37439 18 0.38 Mlig455_013071

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_013071 {REF} {Length: 750} {RNA1509_43962} {RNA1310_113510} {RNA815_17562}
16. MligTC455_16825 83 1.73 Mlig455_004646, Mlig455_014982, Mlig455_033046, Mlig455_067354, Mlig455_070980

Neo: -

Age: Down-Up-Down

Region-enriched R3: 4.629/0.04385

 0.955 - - 0.955 - - -

Mlig455_004646 {REF} {Length: 513} {NoTransDecoderORF} {RNA1509_26883} {RNA1310_785} {RNA815_2080}

Mlig455_014982 {REF} {Length: 176} {NoTransDecoderORF} {RNA1509_26883} {RNA1310_785} {RNA815_2080}

Mlig455_033046 {REF} {Length: 514} {NoTransDecoderORF} {RNA1509_26883} {RNA1310_785} {RNA815_2080}

Mlig455_067354 {REF} {Length: 520} {NoTransDecoderORF} {RNA1509_26883} {RNA1310_785} {RNA815_2080}

Mlig455_070980 {REF} {Length: 3436} {RNA1509_26883} {RNA1310_785} {RNA815_2080}
17. MligTC455_14925 43 0.9 Mlig455_031910

Neo: -

Age: -

 0.954 - - 0.954 - - - Mlig455_031910 {REF} {Length: 672} {RNA1310_118829}
18. MligTC455_50493 1857 38.69 Mlig455_031773, Mlig455_054712

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.446/0.00035

 AADAC, NCEH1 0.952 - - - - 0.952 -

Mlig455_031773 {REF} {Length: 2555} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF07859.15, score=167.2]; Nas2 N_terminal domain [PF18265.3, score=79.8]; PDZ domain [PF17820.3, score=26.6]; Steryl acetyl hydrolase [PF10340.11, score=21.6]; Carboxylesterase family [PF00135.30, score=20.6]; PDZ domain [PF13180.8, score=20.3]} {Human: ENSG00000144959, NCEH1, neutral cholesterol ester hydrolase 1, [RH, Score=132, Expect=9e-33]} {Mouse: ENSMUSG00000090527, Gm5538, predicted gene 5538, [Score=139, Expect=2e-35]; ENSMUSG00000091376, Aadacl2, arylacetamide deacetylase like 2, [Score=134, Expect=1e-33]; ENSMUSG00000095522, Gm8298, predicted gene 8298, [Score=133, Expect=2e-33]} {Dmel: FBgn0038166, CG9588, [Score=65.1, Expect=1e-11]} {Celegans: WBGene00017515, F16F9.4, [Score=151, Expect=5e-40]} {Smed: dd_Smed_v6_4674_0_1, dd_Smed_v6_4674_0_1, [Score=127, Expect=1e-31]} {RNA1509_19463} {RNA1310_22219} {RNA815_19539.1}

Mlig455_054712 {REF} {Length: 2552} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF07859.15, score=167.2]; Nas2 N_terminal domain [PF18265.3, score=79.8]; PDZ domain [PF17820.3, score=28.4]; Steryl acetyl hydrolase [PF10340.11, score=23.4]; PDZ domain [PF13180.8, score=20.0]; Carboxylesterase family [PF00135.30, score=17.7]} {Human: ENSG00000114771, AADAC, arylacetamide deacetylase, [Score=138, Expect=5e-35]} {Mouse: ENSMUSG00000090527, Gm5538, predicted gene 5538, [Score=135, Expect=5e-34]; ENSMUSG00000095522, Gm8298, predicted gene 8298, [Score=130, Expect=2e-32]} {Dmel: FBgn0038166, CG9588, [RH, Score=82.8, Expect=1e-17]} {Celegans: WBGene00017515, F16F9.4, [Score=141, Expect=2e-36]} {Smed: dd_Smed_v6_4674_0_1, dd_Smed_v6_4674_0_1, [Score=114, Expect=4e-27]} {RNA1509_19463, RNA1509_38604} {RNA1310_22219, RNA1509_19463, RNA1509_38604} {RNA1509_19463, RNA1509_38604, RNA815_19539.1}
19. MligTC455_32128 27 0.57 Mlig455_046912

Neo: -

Age: -

 0.951 - - - 0.951 - - Mlig455_046912 {REF} {Length: 1745} {Pfam: Leucine zipper [PF15294.8, score=20.3]} {RNA1509_43362} {RNA1310_20993} {RNA815_38793}
20. MligTC455_10991 207 4.31 Mlig455_011837, Mlig455_013118

Neo: Irradiation

Age: Down-Up-Down

 EGR4 0.95 - - 0.950 - - -

Mlig455_011837 {REF} {Length: 1687} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=52.2]; Zinc-finger double domain [PF13465.8, score=47.8]; C2H2-type zinc finger [PF13894.8, score=41.0]; C2H2-type zinc-finger domain [PF13909.8, score=23.2]} {Human: ENSG00000135625, EGR4, early growth response 4, [Score=107, Expect=3e-24]; ENSG00000179388, EGR3, early growth response 3, [Score=103, Expect=6e-24]; ENSG00000120738, EGR1, early growth response 1, [Score=102, Expect=6e-23]} {Mouse: ENSMUSG00000071341, Egr4, early growth response 4, [Score=107, Expect=9e-25]; ENSMUSG00000033730, Egr3, early growth response 3, [Score=103, Expect=6e-24]; ENSMUSG00000038418, Egr1, early growth response 1, [Score=102, Expect=4e-23]} {Dmel: FBgn0013469, klu, klumpfuss, [RH, Score=130, Expect=2e-32]} {Celegans: WBGene00013970, klu-1, KLUmpfuss related, [RH, Score=133, Expect=8e-34]} {Smed: dd_Smed_v6_16277_0_1, dd_Smed_v6_16277_0_1, [Score=137, Expect=1e-36]} {RNA1509_38897} {RNA1310_16481} {RNA815_46371}

Mlig455_013118 {REF} {Length: 1946} {RNA1509_38897} {RNA1310_16481, RNA1509_38897} {RNA1509_38897, RNA815_46371}
21. MligTC455_24101 322 6.71 Mlig455_009521

Neo: -

Age: -

 LDB3 0.95 - - - 0.950 - - Mlig455_009521 {REF} {Length: 3255} {Pfam: PDZ domain [PF00595.26, score=43.4]; Domain of unknown function (DUF4749) [PF15936.7, score=38.6]; Family of unknown function (DUF6288) [PF19805.1, score=19.0]} {Human: ENSG00000122367, LDB3, LIM domain binding 3, [Score=63.2, Expect=4e-10]; ENSG00000120913, PDLIM2, PDZ and LIM domain 2, [Score=62.0, Expect=3e-10]} {Mouse: ENSMUSG00000022090, Pdlim2, PDZ and LIM domain 2, [Score=65.5, Expect=9e-12]; ENSMUSG00000021798, Ldb3, LIM domain binding 3, [Score=62.8, Expect=2e-10]} {Dmel: FBgn0035917, Zasp66, Z band alternatively spliced PDZ-motif protein 66, [RH, Score=86.7, Expect=4e-18]} {Smed: dd_Smed_v6_1210_0_1, dd_Smed_v6_1210_0_1, [Score=75.9, Expect=2e-14]} {RNA1509_11548} {RNA1310_3373.2, RNA1509_11548} {RNA1509_11548, RNA815_2553.1}
22. MligTC455_52636 35 0.73 Mlig455_058641, Mlig455_058652

Neo: -

Age: -

 0.95 - - 0.950 - - -

Mlig455_058641 {REF} {Length: 405} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_106741}

Mlig455_058652 {REF} {Length: 693} {NoTransDecoderORF} {RNA1310_106741}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA