TomoSeq data search

Data search

Results for MligTC455_27868

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_27868

22

0.47

Mlig455_045469

Neo: -

Age: -

Mlig455_045469 {REF} {Length: 4632} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=93.6]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=70.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=60.7]; Integrase zinc binding domain [PF17921.3, score=53.5]; Integrase core domain [PF00665.28, score=49.2]; Zinc knuckle [PF00098.25, score=25.6]; Integrase core domain [PF13683.8, score=23.5]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=278, Expect=7e-78]} {RNA1509_44038} {RNA1310_11212} {RNA815_23682}

Cumulative graph for MligTC455_27868

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	4.092	0.817	0.99377	1.00000
RegionR2	1.53	0.817	0.99953	1.00000
RegionR3	-1.941	0.817	0.99976	1.00000
RegionR4	-3.061	0.817	0.99958	1.00000
RegionR5	0.043	0.817	0.99935	1.00000
RegionR6	-1.755	0.817	0.99975	1.00000
RegionR7	0.607	0.817	0.99953	1.00000
RegionR8	0.486	0.817	0.99994	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-2.377	0.817	0.99954	1.00000
RegenerationR2	4.196	0.817	0.00008	0.01014
RegenerationR3	4.635	0.817	0.00444	0.12006
RegenerationR4	3.873	0.817	0.00842	0.13653
RegenerationR5	3.183	0.817	0.00519	0.13085
RegenerationR6	3.815	0.817	0.00515	0.08668
RegenerationBL	0.344	0.817	0.99990	1.00000
RegenerationTP	2.748	0.817	0.03121	0.29647

Genes with expression patterns similar to MligTC455_27868

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_27868	22	0.47	Mlig455_045469	Neo: - Age: -		1	-	-	-	-	1.000	-	Mlig455_045469 {REF} {Length: 4632} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=93.6]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=70.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=60.7]; Integrase zinc binding domain [PF17921.3, score=53.5]; Integrase core domain [PF00665.28, score=49.2]; Zinc knuckle [PF00098.25, score=25.6]; Integrase core domain [PF13683.8, score=23.5]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=278, Expect=7e-78]} {RNA1509_44038} {RNA1310_11212} {RNA815_23682}
2.	MligTC455_51317	9	0.18	Mlig455_030618	Neo: Irradiation Age: -		0.98	-	-	-	-	0.980	-	Mlig455_030618 {REF} {Length: 820} {RNA1509_9989} {RNA1310_94733.1} {RNA815_12566.4}
3.	MligTC455_35220	430	8.96	Mlig455_057315	Neo: - Age: -		0.969	-	-	-	-	0.969	-	Mlig455_057315 {REF} {Length: 2102} {TRANSSPLICED} {RNA1509_28464} {RNA1310_5172} {RNA815_3315}
4.	MligTC455_02590	19	0.4	Mlig455_027316	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.490	MX2	0.958	-	-	-	-	0.958	-	Mlig455_027316 {REF} {Length: 3400} {Pfam: Dynamin central region [PF01031.22, score=151.8]; Family with sequence similarity 184, A and B [PF15665.7, score=21.2]} {Human: ENSG00000183486, MX2, MX dynamin like GTPase 2, [Score=124, Expect=6e-31]} {Mouse: ENSMUSG00000023341, Mx2, MX dynamin-like GTPase 2, [Score=121, Expect=3e-30]} {RNA1509_19894} {RNA1310_7243} {RNA815_3194}
5.	MligTC455_07571	7	0.15	Mlig455_014556	Neo: - Age: -		0.954	-	-	-	-	0.954	-	Mlig455_014556 {REF} {Length: 357} {NoTransDecoderORF}
6.	MligTC455_40822	53	1.1	Mlig455_041922	Neo: - Age: Down-Up-Down Region-enriched R5: 3.132/0.04294	PARPBP	0.952	-	-	-	-	0.952	-	Mlig455_041922 {REF} {Length: 3695} {Human: ENSG00000185480, PARPBP, PARP1 binding protein, [RH, Score=77.8, Expect=2e-15]} {Mouse: ENSMUSG00000035365, Parpbp, PARP1 binding protein, [RH, Score=79.3, Expect=4e-15]} {Smed: dd_Smed_v6_34200_0_1, dd_Smed_v6_34200_0_1, [RH, Score=81.3, Expect=3e-16]} {RNA1509_46952} {RNA1310_6393.1} {RNA815_2577.1}

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