M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_27906

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_27906 155 3.24 Mlig455_051966

Neo: Int S/G2/M

Age: Up-Down-Down

 KAT2B Mlig455_051966 {REF} {Length: 3819} {TRANSSPLICED} {Pfam: PCAF (P300/CBP-associated factor) N-terminal domain [PF06466.13, score=161.2]; Bromodomain [PF00439.27, score=75.5]; Acetyltransferase (GNAT) family [PF00583.27, score=26.5]} {Human: ENSG00000114166, KAT2B, lysine acetyltransferase 2B, [RH, Score=422, Expect=5e-134]; ENSG00000108773, KAT2A, lysine acetyltransferase 2A, [RH, Score=410, Expect=1e-129]} {Mouse: ENSMUSG00000000708, Kat2b, K(lysine) acetyltransferase 2B, [Score=429, Expect=2e-137]} {Dmel: FBgn0020388, Gcn5, Gcn5 acetyltransferase, [RH, Score=263, Expect=1e-75]} {Celegans: WBGene00021636, pcaf-1, P300/CBP Associated Factor homolog, [RH, Score=229, Expect=1e-63]} {Smed: dd_Smed_v6_11453_0_1, dd_Smed_v6_11453_0_1, [RH, Score=429, Expect=2e-141]} {RNA1509_19153} {RNA1310_2061.1} {RNA815_10396.1}

Cumulative graph for MligTC455_27906

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -4.143 2.479 0.42804 1.00000
RegionR2 1.048 2.479 0.31330 0.70440
RegionR3 -0.112 2.479 0.88750 1.00000
RegionR4 2.197 2.479 0.01586 0.08601
RegionR5 0.364 2.479 0.67732 1.00000
RegionR6 0.201 2.479 0.77531 1.00000
RegionR7 1.106 2.479 0.32055 0.95563
RegionR8 -0.661 2.479 0.97203 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.05 2.479 0.99995 1.00000
RegenerationR2 -0.646 2.479 0.28426 0.72761
RegenerationR3 0.696 2.479 0.31968 0.74809
RegenerationR4 -1.208 2.479 0.08158 0.45183
RegenerationR5 0.106 2.479 0.86607 1.00000
RegenerationR6 0.786 2.479 0.26351 0.61330
RegenerationBL 0.388 2.479 0.71695 1.00000
RegenerationTP 1.167 2.479 0.23493 0.68065


Genes with expression patterns similar to MligTC455_27906

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_27906 155 3.24 Mlig455_051966

Neo: Int S/G2/M

Age: Up-Down-Down

 KAT2B 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_051966 {REF} {Length: 3819} {TRANSSPLICED} {Pfam: PCAF (P300/CBP-associated factor) N-terminal domain [PF06466.13, score=161.2]; Bromodomain [PF00439.27, score=75.5]; Acetyltransferase (GNAT) family [PF00583.27, score=26.5]} {Human: ENSG00000114166, KAT2B, lysine acetyltransferase 2B, [RH, Score=422, Expect=5e-134]; ENSG00000108773, KAT2A, lysine acetyltransferase 2A, [RH, Score=410, Expect=1e-129]} {Mouse: ENSMUSG00000000708, Kat2b, K(lysine) acetyltransferase 2B, [Score=429, Expect=2e-137]} {Dmel: FBgn0020388, Gcn5, Gcn5 acetyltransferase, [RH, Score=263, Expect=1e-75]} {Celegans: WBGene00021636, pcaf-1, P300/CBP Associated Factor homolog, [RH, Score=229, Expect=1e-63]} {Smed: dd_Smed_v6_11453_0_1, dd_Smed_v6_11453_0_1, [RH, Score=429, Expect=2e-141]} {RNA1509_19153} {RNA1310_2061.1} {RNA815_10396.1}
2. MligTC455_27903 151 3.15 Mlig455_019807

Neo: -

Age: -

 KAT2A 5.942 0.988 0.981 1.000 0.995 0.992 0.986 Mlig455_019807 {REF} {Length: 4487} {Pfam: PCAF (P300/CBP-associated factor) N-terminal domain [PF06466.13, score=214.8]; Bromodomain [PF00439.27, score=75.8]; Acetyltransferase (GNAT) family [PF00583.27, score=26.5]} {Human: ENSG00000108773, KAT2A, lysine acetyltransferase 2A, [RH, Score=427, Expect=4e-135]} {Mouse: ENSMUSG00000000708, Kat2b, K(lysine) acetyltransferase 2B, [RH, Score=452, Expect=3e-145]} {Dmel: FBgn0020388, Gcn5, Gcn5 acetyltransferase, [RH, Score=263, Expect=5e-75]} {Celegans: WBGene00021636, pcaf-1, P300/CBP Associated Factor homolog, [RH, Score=229, Expect=3e-63]} {Smed: dd_Smed_v6_11453_0_1, dd_Smed_v6_11453_0_1, [RH, Score=422, Expect=6e-138]} {RNA1509_19153} {RNA1310_2061.1} {RNA815_10396.1}
3. MligTC455_53734 59 1.23 Mlig455_055711

Neo: -

Age: -

 1.677 - - - 0.966 - 0.711 Mlig455_055711 {REF} {Length: 2272} {RNA1509_48475} {RNA1310_18466} {RNA815_22605}
4. MligTC455_22532 3930 81.87 Mlig455_048498

Neo: -

Age: Down-Down-Up

 SF3B6 0.987 - - - - 0.987 - Mlig455_048498 {REF} {Length: 657} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=53.4]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=23.4]} {Human: ENSG00000115128, SF3B6, splicing factor 3b subunit 6, [RH, Score=187, Expect=5e-62]} {Mouse: ENSMUSG00000037361, Sf3b6, splicing factor 3B, subunit 6, [RH, Score=187, Expect=3e-62]} {Dmel: FBgn0035692, Sf3b6, Splicing factor 3b subunit 6, [RH, Score=197, Expect=3e-66]} {Celegans: WBGene00016808, C50D2.5, Splicing factor 3B subunit 6-like protein, [RH, Score=177, Expect=3e-58]} {Smed: dd_Smed_v6_2216_0_1, dd_Smed_v6_2216_0_1, [RH, Score=175, Expect=8e-58]} {RNA1509_15469, RNA1509_18559, RNA1509_20062, RNA1509_31460, RNA1509_34896, RNA1509_35054, RNA1509_47284} {RNA1310_53909.1, RNA1509_15469, RNA1509_18559, RNA1509_20062, RNA1509_31460, RNA1509_34896, RNA1509_35054, RNA1509_47284} {RNA1509_15469, RNA1509_18559, RNA1509_20062, RNA1509_31460, RNA1509_34896, RNA1509_35054, RNA1509_47284, RNA815_27420}
5. MligTC455_14243 58 1.22 Mlig455_057238

Neo: -

Age: -

 ETV7 0.974 - - - 0.974 - - Mlig455_057238 {REF} {Length: 1031} {Pfam: Ets-domain [PF00178.24, score=57.2]} {Human: ENSG00000010030, ETV7, ETS variant 7, [Score=60.5, Expect=1e-10]} {Mouse: ENSMUSG00000024215, Spdef, SAM pointed domain containing ets transcription factor, [Score=57.0, Expect=2e-09]} {Dmel: FBgn0005659, Ets98B, Ets at 98B, [Score=57.8, Expect=9e-10]} {RNA1310_20084.1} {RNA815_23782.1}
6. MligTC455_24665 140 2.92 Mlig455_005982

Neo: Int S/G2/M

Age: Up-Down-Up

 MSTO1 0.965 - - - 0.965 - - Mlig455_005982 {REF} {Length: 3047} {TRANSSPLICED} {Pfam: Misato Segment II tubulin-like domain [PF10644.11, score=73.7]; Tubulin domain [PF14881.8, score=34.9]} {Human: ENSG00000125459, MSTO1, misato 1, mitochondrial distribution and morphology regulator, [Score=108, Expect=1e-24]} {Mouse: ENSMUSG00000068922, Msto1, misato 1, mitochondrial distribution and morphology regulator, [Score=104, Expect=3e-23]} {Dmel: FBgn0020272, mst, misato, [RH, Score=121, Expect=5e-29]} {Smed: dd_Smed_v6_11439_0_1, dd_Smed_v6_11439_0_1, [Score=105, Expect=3e-24]} {RNA1509_26413} {RNA1310_14007.1, RNA1509_26413} {RNA1509_26413, RNA815_5955.1}
7. MligTC455_35094 87 1.81 Mlig455_005764, Mlig455_005781, Mlig455_005808

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.906

 CNNM2 0.964 - - - 0.964 - -

Mlig455_005764 {REF} {Length: 3715} {Pfam: Cyclin M transmembrane N-terminal domain [PF01595.22, score=113.5]; CBS domain [PF00571.30, score=21.2]} {Human: ENSG00000148842, CNNM2, cyclin and CBS domain divalent metal cation transport mediator 2, [Score=189, Expect=1e-51]} {Mouse: ENSMUSG00000064105, Cnnm2, cyclin M2, [Score=188, Expect=1e-51]} {Dmel: FBgn0262124, uex, unextended, [Score=172, Expect=2e-46]} {Celegans: WBGene00016879, cnnm-1, Metal transporter cnnm-1, [Score=147, Expect=6e-38]} {Smed: dd_Smed_v6_6666_0_1, dd_Smed_v6_6666_0_1, [Score=221, Expect=1e-67]} {RNA1509_31868} {RNA1310_40700} {RNA815_5292}

Mlig455_005781 {REF} {Length: 3716} {Pfam: Cyclin M transmembrane N-terminal domain [PF01595.22, score=113.5]; CBS domain [PF00571.30, score=21.2]} {Human: ENSG00000148842, CNNM2, cyclin and CBS domain divalent metal cation transport mediator 2, [Score=189, Expect=1e-51]} {Mouse: ENSMUSG00000064105, Cnnm2, cyclin M2, [Score=188, Expect=1e-51]} {Dmel: FBgn0262124, uex, unextended, [Score=172, Expect=2e-46]} {Celegans: WBGene00016879, cnnm-1, Metal transporter cnnm-1, [Score=147, Expect=6e-38]} {Smed: dd_Smed_v6_6666_0_1, dd_Smed_v6_6666_0_1, [Score=221, Expect=1e-67]} {RNA1509_31868} {RNA1310_40700} {RNA815_5292}

Mlig455_005808 {REF} {Length: 2715} {Pfam: Cyclin M transmembrane N-terminal domain [PF01595.22, score=113.9]; CBS domain [PF00571.30, score=21.8]} {Human: ENSG00000148842, CNNM2, cyclin and CBS domain divalent metal cation transport mediator 2, [Score=189, Expect=1e-52]} {Mouse: ENSMUSG00000064105, Cnnm2, cyclin M2, [Score=189, Expect=1e-52]} {Dmel: FBgn0262124, uex, unextended, [Score=171, Expect=1e-46]} {Celegans: WBGene00016879, cnnm-1, Metal transporter cnnm-1, [Score=146, Expect=4e-38]} {Smed: dd_Smed_v6_6666_0_1, dd_Smed_v6_6666_0_1, [Score=222, Expect=1e-68]} {RNA1509_31868} {RNA1310_40700} {RNA815_5292}
8. MligTC455_25374 428 8.91 Mlig455_036389, Mlig455_036390, Mlig455_036391, Mlig455_054557

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.690

Regeneration-upregulated BL: 5.459

Regeneration-enriched BL: 5.459

 0.962 - - - 0.962 - -

Mlig455_036389 {REF} {Length: 860} {NoTransDecoderORF} {RNA1509_40044} {RNA1310_33232} {RNA815_16463}

Mlig455_036390 {REF} {Length: 5024} {RNA1509_54862} {RNA1310_31416} {RNA815_5170.1}

Mlig455_036391 {REF} {Length: 3445} {RNA1509_54862} {RNA1310_31416} {RNA815_5170.1}

Mlig455_054557 {REF} {Length: 6330} {RNA1509_54862} {RNA1310_31416} {RNA815_5170.1}
9. MligTC455_11485 67 1.39 Mlig455_071010

Neo: -

Age: -

 0.959 - - - 0.959 - - Mlig455_071010 {REF} {Length: 1261} {NoTransDecoderORF} {RNA1509_50390} {RNA1310_20894} {RNA815_18359}
10. MligTC455_51391 36 0.75 Mlig455_010711

Neo: -

Age: -

 0.957 - - - 0.957 - - Mlig455_010711 {REF} {Length: 2180} {NoTransDecoderORF} {RNA1509_40957} {RNA1310_20727.1} {RNA815_16253.1}
11. MligTC455_11137 65 1.36 Mlig455_007742

Neo: -

Age: -

 FAT1 0.956 - - - 0.956 - - Mlig455_007742 {REF} {Length: 4301} {Pfam: Cadherin domain [PF00028.19, score=102.1]; EGF-like domain [PF00008.29, score=51.2]; Calcium-binding EGF domain [PF07645.17, score=33.3]} {Human: ENSG00000083857, FAT1, FAT atypical cadherin 1, [Score=207, Expect=2e-53]; ENSG00000165323, FAT3, FAT atypical cadherin 3, [Score=205, Expect=1e-52]; ENSG00000282908, FAT3, FAT atypical cadherin 3, [Score=205, Expect=1e-52]} {Mouse: ENSMUSG00000070047, Fat1, FAT atypical cadherin 1, [Score=212, Expect=5e-55]; ENSMUSG00000074505, Fat3, FAT atypical cadherin 3, [Score=210, Expect=2e-54]} {Dmel: FBgn0261574, kug, kugelei, [Score=155, Expect=9e-38]} {Celegans: WBGene00000396, cdh-4, Cadherin-4, [Score=121, Expect=2e-27]} {Smed: dd_Smed_v6_7638_0_1, dd_Smed_v6_7638_0_1, [Score=161, Expect=1e-39]} {RNA1509_55673} {RNA1310_45646} {RNA815_38697}
12. MligTC455_17151 70 1.45 Mlig455_022264

Neo: -

Age: -

 0.956 - - 0.956 - - - Mlig455_022264 {REF} {Length: 2660} {NoTransDecoderORF} {RNA1509_47234} {RNA1310_2938.1} {RNA815_14343.1}
13. MligTC455_48314 289 6.03 Mlig455_007191, Mlig455_007262

Neo: -

Age: logFC(26M/2M)=-0.642

 SVOP 0.955 - - - - - 0.955

Mlig455_007191 {REF} {Length: 2304} {Pfam: Sugar (and other) transporter [PF00083.26, score=60.9]; Major Facilitator Superfamily [PF07690.18, score=32.0]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=173, Expect=4e-49]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=163, Expect=1e-45]} {Dmel: FBgn0034956, CG4324, [Score=149, Expect=7e-41]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=171, Expect=7e-49]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=186, Expect=5e-55]} {RNA1509_56107} {RNA1310_13096} {RNA815_26584}

Mlig455_007262 {REF} {Length: 2058} {Pfam: Sugar (and other) transporter [PF00083.26, score=115.4]; Major Facilitator Superfamily [PF07690.18, score=114.5]} {Human: ENSG00000166111, SVOP, SV2 related protein, [Score=317, Expect=2e-101]} {Mouse: ENSMUSG00000042078, Svop, SV2 related protein, [Score=311, Expect=3e-99]} {Dmel: FBgn0034956, CG4324, [Score=252, Expect=2e-77]} {Celegans: WBGene00014021, svop-1, Putative transporter svop-1, [Score=301, Expect=3e-96]} {Smed: dd_Smed_v6_3645_0_1, dd_Smed_v6_3645_0_1, [Score=335, Expect=1e-109]} {RNA1509_56107} {RNA1310_12870} {RNA815_26584}
14. MligTC455_47004 371 7.72 Mlig455_007268

Neo: -

Age: Down-Up-Up

 OGFOD1 0.95 - - - 0.950 - - Mlig455_007268 {REF} {Length: 1419} {Pfam: Oxoglutarate and iron-dependent oxygenase degradation C-term [PF10637.11, score=46.5]} {Human: ENSG00000087263, OGFOD1, 2-oxoglutarate and iron dependent oxygenase domain containing 1, [Score=86.3, Expect=5e-19]} {Mouse: ENSMUSG00000033009, Ogfod1, 2-oxoglutarate and iron-dependent oxygenase domain containing 1, [Score=85.5, Expect=6e-19]} {RNA1509_32662, RNA1509_50798} {RNA1310_19206, RNA1509_32662, RNA1509_50798} {RNA1509_32662, RNA1509_50798, RNA815_18604}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA