TomoSeq data search

Data search

Results for MligTC455_27910

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_27910

912

19.00

Mlig455_042235, Mlig455_047076

Neo: -

Age: -

TRAF4

Mlig455_042235 {REF} {Length: 4548} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=58.9]; zinc finger of C3HC4-type, RING [PF15227.8, score=28.5]; RING-type zinc-finger [PF13445.8, score=26.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=26.0]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.8]; Ring finger domain [PF13639.8, score=20.8]} {Human: ENSG00000076604, TRAF4, TNF receptor associated factor 4, [Score=72.4, Expect=3e-13]} {Mouse: ENSMUSG00000027164, Traf6, TNF receptor-associated factor 6, [Score=83.2, Expect=8e-17]; ENSMUSG00000017386, Traf4, TNF receptor associated factor 4, [Score=79.7, Expect=8e-16]} {Smed: dd_Smed_v6_13517_0_1, dd_Smed_v6_13517_0_1, [Score=70.9, Expect=3e-13]} {RNA1509_17572, RNA1509_26634} {RNA1310_20276, RNA1509_17572, RNA1509_26634} {RNA1509_17572, RNA1509_26634, RNA815_4920}

Mlig455_047076 {REF} {Length: 4661} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=58.9]; zinc finger of C3HC4-type, RING [PF15227.8, score=28.5]; RING-type zinc-finger [PF13445.8, score=26.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=26.0]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.8]; Ring finger domain [PF13639.8, score=20.8]} {Human: ENSG00000076604, TRAF4, TNF receptor associated factor 4, [Score=72.4, Expect=3e-13]} {Mouse: ENSMUSG00000027164, Traf6, TNF receptor-associated factor 6, [Score=83.2, Expect=8e-17]; ENSMUSG00000017386, Traf4, TNF receptor associated factor 4, [Score=79.7, Expect=8e-16]} {Smed: dd_Smed_v6_13517_0_1, dd_Smed_v6_13517_0_1, [Score=70.9, Expect=3e-13]} {RNA1509_17572, RNA1509_34532} {RNA1310_20116, RNA1509_34532} {RNA1509_34532, RNA815_4920}

Cumulative graph for MligTC455_27910

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.523	4.525	0.10861	0.68756
RegionR2	0.547	4.525	0.22551	0.59603
RegionR3	0.605	4.525	0.07277	0.47855
RegionR4	-0.568	4.525	0.17596	0.44287
RegionR5	-0.02	4.525	0.95482	1.00000
RegionR6	0.563	4.525	0.10352	0.59043
RegionR7	0.155	4.525	0.70992	1.00000
RegionR8	0.24	4.525	0.61668	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-5.78	4.525	0.22328	0.95604
RegenerationR2	0.307	4.525	0.42055	0.82777
RegenerationR3	0.375	4.525	0.37305	0.78528
RegenerationR4	0.767	4.525	0.08012	0.44872
RegenerationR5	0.38	4.525	0.33333	0.75363
RegenerationR6	-0.045	4.525	0.92003	1.00000
RegenerationBL	-0.332	4.525	0.52798	0.88844
RegenerationTP	0.239	4.525	0.63683	0.98164

Genes with expression patterns similar to MligTC455_27910

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_27910	912	19	Mlig455_042235, Mlig455_047076	Neo: - Age: -	TRAF4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_042235 {REF} {Length: 4548} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=58.9]; zinc finger of C3HC4-type, RING [PF15227.8, score=28.5]; RING-type zinc-finger [PF13445.8, score=26.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=26.0]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.8]; Ring finger domain [PF13639.8, score=20.8]} {Human: ENSG00000076604, TRAF4, TNF receptor associated factor 4, [Score=72.4, Expect=3e-13]} {Mouse: ENSMUSG00000027164, Traf6, TNF receptor-associated factor 6, [Score=83.2, Expect=8e-17]; ENSMUSG00000017386, Traf4, TNF receptor associated factor 4, [Score=79.7, Expect=8e-16]} {Smed: dd_Smed_v6_13517_0_1, dd_Smed_v6_13517_0_1, [Score=70.9, Expect=3e-13]} {RNA1509_17572, RNA1509_26634} {RNA1310_20276, RNA1509_17572, RNA1509_26634} {RNA1509_17572, RNA1509_26634, RNA815_4920} Mlig455_047076 {REF} {Length: 4661} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=58.9]; zinc finger of C3HC4-type, RING [PF15227.8, score=28.5]; RING-type zinc-finger [PF13445.8, score=26.0]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=26.0]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=21.8]; Ring finger domain [PF13639.8, score=20.8]} {Human: ENSG00000076604, TRAF4, TNF receptor associated factor 4, [Score=72.4, Expect=3e-13]} {Mouse: ENSMUSG00000027164, Traf6, TNF receptor-associated factor 6, [Score=83.2, Expect=8e-17]; ENSMUSG00000017386, Traf4, TNF receptor associated factor 4, [Score=79.7, Expect=8e-16]} {Smed: dd_Smed_v6_13517_0_1, dd_Smed_v6_13517_0_1, [Score=70.9, Expect=3e-13]} {RNA1509_17572, RNA1509_34532} {RNA1310_20116, RNA1509_34532} {RNA1509_34532, RNA815_4920}
2.	MligTC455_03908	891	18.55	Mlig455_025735, Mlig455_025764, Mlig455_064427	Neo: - Age: Up-Down-Up Region-enriched R4: 1.328/0.03692		1.736	-	-	-	-	0.786	0.950	Mlig455_025735 {REF} {Length: 458} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_48499} {RNA1310_46090} {RNA815_26716} Mlig455_025764 {REF} {Length: 457} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_48499} {RNA1310_46090} {RNA815_26716} Mlig455_064427 {REF} {Length: 431} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_48499} {RNA1310_46090} {RNA815_26716}
3.	MligTC455_38275	825	17.19	Mlig455_047221	Neo: - Age: - Region-enriched R5: 1.041/0.00680	USP32	0.966	-	-	-	-	-	0.966	Mlig455_047221 {REF} {Length: 6367} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=289.9]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=59.5]; DUSP domain [PF06337.14, score=57.9]; EF-hand domain pair [PF13499.8, score=32.2]; EF hand [PF00036.34, score=29.8]; EF-hand domain [PF13405.8, score=27.3]} {Human: ENSG00000170832, USP32, ubiquitin specific peptidase 32, [RH, Score=645, Expect=0.0]} {Mouse: ENSMUSG00000000804, Usp32, ubiquitin specific peptidase 32, [RH, Score=641, Expect=0.0]} {Dmel: FBgn0036913, Usp32, Ubiquitin specific protease 32, [RH, Score=664, Expect=0.0]} {Celegans: WBGene00000874, cyk-3, CYtoKinesis defect; Ubiquitin c-terminal hydrolase, [RH, Score=268, Expect=2e-73]} {Smed: dd_Smed_v6_6841_0_2, dd_Smed_v6_6841_0_2, [RH, Score=564, Expect=1e-175]} {RNA1509_20216, RNA1509_2380, RNA1509_45065, RNA1509_51584} {RNA1310_1614, RNA1509_20216, RNA1509_45065, RNA1509_51584} {RNA1509_20216, RNA1509_45065, RNA1509_51584, RNA815_143.1}
4.	MligTC455_34167	599	12.49	Mlig455_056273	Neo: Irradiation Age: Up-Down-Down Region-enriched R4: 1.787/0.00113	VAV2	0.957	-	-	-	-	-	0.957	Mlig455_056273 {REF} {Length: 4422} {TRANSSPLICED} {Pfam: RhoGEF domain [PF00621.22, score=115.8]; SH2 domain [PF00017.26, score=61.7]; Calponin homology (CH) domain [PF00307.33, score=39.5]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=29.2]; Variant SH3 domain [PF07653.19, score=28.8]; CAMSAP CH domain [PF11971.10, score=24.8]; Variant SH3 domain [PF14604.8, score=21.9]} {Human: ENSG00000160293, VAV2, vav guanine nucleotide exchange factor 2, [RH, Score=332, Expect=2e-99]; ENSG00000134215, VAV3, vav guanine nucleotide exchange factor 3, [RH, Score=321, Expect=2e-95]} {Mouse: ENSMUSG00000009621, Vav2, vav 2 oncogene, [RH, Score=325, Expect=4e-97]; ENSMUSG00000033721, Vav3, vav 3 oncogene, [RH, Score=314, Expect=6e-93]} {Dmel: FBgn0040068, Vav, Vav guanine nucleotide exchange factor, [RH, Score=214, Expect=6e-58]} {Celegans: WBGene00006887, vav-1, [Score=206, Expect=1e-54]} {Smed: dd_Smed_v6_6109_0_1, dd_Smed_v6_6109_0_1, [RH, Score=297, Expect=7e-88]} {RNA1509_6656} {RNA1310_4823.2, RNA1509_6656} {RNA1509_6656, RNA815_4374}
5.	MligTC455_31313	381	7.94	Mlig455_001901	Neo: - Age: -	ARGLU1	0.952	-	-	-	-	-	0.952	Mlig455_001901 {REF} {Length: 2328} {TRANSSPLICED} {Pfam: Arginine and glutamate-rich 1 [PF15346.8, score=111.3]} {Human: ENSG00000134884, ARGLU1, arginine and glutamate rich 1, [RH, Score=79.0, Expect=1e-16]} {Mouse: ENSMUSG00000040459, Arglu1, arginine and glutamate rich 1, [RH, Score=79.3, Expect=9e-17]} {Dmel: FBgn0051712, CG31712, [RH, Score=83.2, Expect=3e-18]} {Smed: dd_Smed_v6_6381_0_1, dd_Smed_v6_6381_0_1, [RH, Score=63.9, Expect=5e-12]} {RNA1509_30130} {RNA1310_34850} {RNA815_5433.1}
6.	MligTC455_44233	289	6.02	Mlig455_051463	Neo: - Age: -	ENDOU	0.952	-	-	-	-	-	0.952	Mlig455_051463 {REF} {Length: 2268} {TRANSSPLICED} {Pfam: Endoribonuclease XendoU [PF09412.12, score=257.0]} {Human: ENSG00000111405, ENDOU, endonuclease, poly(U) specific, [RH, Score=145, Expect=1e-40]} {Mouse: ENSMUSG00000022468, Endou, endonuclease, polyU-specific, [RH, Score=148, Expect=3e-41]} {Dmel: FBgn0038381, EndoU, Endoribonuclease U-specific, [RH, Score=112, Expect=1e-28]} {Celegans: WBGene00010488, endu-1, Poly(U)-specific endoribonuclease homolog, [RH, Score=120, Expect=4e-32]} {Smed: dd_Smed_v6_9580_0_1, dd_Smed_v6_9580_0_1, [RH, Score=219, Expect=4e-70]} {RNA1509_46201, RNA1509_51120} {RNA1310_16027, RNA1509_46201, RNA1509_51120} {RNA1509_46201, RNA1509_51120, RNA815_6308.1}
7.	MligTC455_53589	347	7.22	Mlig455_032424	Neo: - Age: Down-Up-Down	CHIC2	0.951	-	-	-	-	-	0.951	Mlig455_032424 {REF} {Length: 2260} {Pfam: Golgin subfamily A member 7/ERF4 family [PF10256.11, score=43.6]} {Human: ENSG00000109220, CHIC2, cysteine rich hydrophobic domain 2, [RH, Score=160, Expect=2e-50]; ENSG00000204116, CHIC1, cysteine rich hydrophobic domain 1, [RH, Score=155, Expect=1e-47]} {Mouse: ENSMUSG00000029229, Chic2, cysteine-rich hydrophobic domain 2, [RH, Score=162, Expect=5e-51]; ENSMUSG00000031327, Chic1, cysteine-rich hydrophobic domain 1, [RH, Score=157, Expect=2e-48]} {Dmel: FBgn0046247, CG5938, [RH, Score=164, Expect=5e-52]} {Celegans: WBGene00044319, tag-266, Cysteine-rich hydrophobic protein, [RH, Score=167, Expect=3e-53]} {Smed: dd_Smed_v6_4955_0_1, dd_Smed_v6_4955_0_1, [RH, Score=126, Expect=1e-37]} {RNA1509_47197, RNA1509_59802} {RNA1310_26581.1, RNA1509_47197, RNA1509_59802} {RNA1509_47197, RNA1509_59802, RNA815_15260}

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