TomoSeq data search

Data search

Results for MligTC455_28043

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_28043	84	1.76	Mlig455_066049	Neo: Irradiation Age: Down-Up-Down	LDB2	Mlig455_066049 {REF} {Length: 3928} {TRANSSPLICED} {Pfam: LIM-domain binding protein [PF01803.18, score=99.0]; LIM interaction domain (LID) [PF17916.3, score=40.0]} {Human: ENSG00000169744, LDB2, LIM domain binding 2, [Score=218, Expect=9e-65]} {Mouse: ENSMUSG00000039706, Ldb2, LIM domain binding 2, [Score=213, Expect=6e-63]; ENSMUSG00000025223, Ldb1, LIM domain binding 1, [Score=209, Expect=2e-61]} {Dmel: FBgn0013764, Chi, Chip, [Score=191, Expect=1e-52]} {Celegans: WBGene00002261, ldb-1, F58A3.1a; LIM Domain Binding protein, [Score=83.2, Expect=2e-16]} {Smed: dd_Smed_v6_3678_0_1, dd_Smed_v6_3678_0_1, [Score=201, Expect=1e-56]} {RNA1509_53153, RNA1509_58910} {RNA1310_20938, RNA1509_53153} {RNA1509_53153, RNA815_15319}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28043

1.76

Mlig455_066049

Neo: Irradiation

Age: Down-Up-Down

LDB2

Mlig455_066049 {REF} {Length: 3928} {TRANSSPLICED} {Pfam: LIM-domain binding protein [PF01803.18, score=99.0]; LIM interaction domain (LID) [PF17916.3, score=40.0]} {Human: ENSG00000169744, LDB2, LIM domain binding 2, [Score=218, Expect=9e-65]} {Mouse: ENSMUSG00000039706, Ldb2, LIM domain binding 2, [Score=213, Expect=6e-63]; ENSMUSG00000025223, Ldb1, LIM domain binding 1, [Score=209, Expect=2e-61]} {Dmel: FBgn0013764, Chi, Chip, [Score=191, Expect=1e-52]} {Celegans: WBGene00002261, ldb-1, F58A3.1a; LIM Domain Binding protein, [Score=83.2, Expect=2e-16]} {Smed: dd_Smed_v6_3678_0_1, dd_Smed_v6_3678_0_1, [Score=201, Expect=1e-56]} {RNA1509_53153, RNA1509_58910} {RNA1310_20938, RNA1509_53153} {RNA1509_53153, RNA815_15319}

Cumulative graph for MligTC455_28043

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.816	1.746	0.99978	1.00000
RegionR2	1.282	1.746	0.57593	0.93340
RegionR3	0.925	1.746	0.52704	1.00000
RegionR4	1.221	1.746	0.45103	0.78002
RegionR5	1.937	1.746	0.23216	0.53940
RegionR6	0.808	1.746	0.57259	1.00000
RegionR7	-2.86	1.746	0.99978	1.00000
RegionR8	-2.496	1.746	0.99979	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	3.88	1.746	0.64026	1.00000
RegenerationR2	-0.591	1.746	0.73918	0.96950
RegenerationR3	0.193	1.746	0.98771	1.00000
RegenerationR4	-0.192	1.746	0.84852	1.00000
RegenerationR5	-0.023	1.746	0.93617	1.00000
RegenerationR6	2.603	1.746	0.17408	0.50659
RegenerationBL	1.123	1.746	0.55704	0.91252
RegenerationTP	2.053	1.746	0.48146	0.88916

Genes with expression patterns similar to MligTC455_28043

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28043	84	1.76	Mlig455_066049	Neo: Irradiation Age: Down-Up-Down	LDB2	4	1.000	-	1.000	-	1.000	1.000	Mlig455_066049 {REF} {Length: 3928} {TRANSSPLICED} {Pfam: LIM-domain binding protein [PF01803.18, score=99.0]; LIM interaction domain (LID) [PF17916.3, score=40.0]} {Human: ENSG00000169744, LDB2, LIM domain binding 2, [Score=218, Expect=9e-65]} {Mouse: ENSMUSG00000039706, Ldb2, LIM domain binding 2, [Score=213, Expect=6e-63]; ENSMUSG00000025223, Ldb1, LIM domain binding 1, [Score=209, Expect=2e-61]} {Dmel: FBgn0013764, Chi, Chip, [Score=191, Expect=1e-52]} {Celegans: WBGene00002261, ldb-1, F58A3.1a; LIM Domain Binding protein, [Score=83.2, Expect=2e-16]} {Smed: dd_Smed_v6_3678_0_1, dd_Smed_v6_3678_0_1, [Score=201, Expect=1e-56]} {RNA1509_53153, RNA1509_58910} {RNA1310_20938, RNA1509_53153} {RNA1509_53153, RNA815_15319}
2.	MligTC455_35547	37	0.77	Mlig455_049646	Neo: - Age: - Regeneration-upregulated R5: 6.339 Regeneration-enriched R5: 6.339		0.971	-	-	-	-	-	0.971	Mlig455_049646 {REF} {Length: 267} {NoTransDecoderORF} {RNA1509_21169} {RNA1310_34927.1} {RNA815_19085.1}
3.	MligTC455_27404	126	2.62	Mlig455_055427	Neo: Germline Age: Up-Down-Down Region-enriched R5: 2.811/0.00047		0.963	-	-	-	-	-	0.963	Mlig455_055427 {REF} {Length: 5785} {TRANSSPLICED} {Pfam: NHL repeat [PF01436.23, score=20.1]} {Mouse: ENSMUSG00000027422, Rrbp1, ribosome binding protein 1, [Score=62.8, Expect=3e-09]} {RNA1509_31175} {RNA1310_11529} {RNA815_1590.1}
4.	MligTC455_28355	294	6.12	Mlig455_004369	Neo: - Age: Up-Down-Up		0.953	-	-	-	-	-	0.953	Mlig455_004369 {REF} {Length: 4652} {TRANSSPLICED} {Pfam: Wolframin cysteine-rich domain [PF20053.1, score=73.1]; Wolframin C-terminal OB-fold domain [PF19913.1, score=32.7]} {RNA1509_20192} {RNA1310_15643, RNA1509_20192} {RNA1509_20192, RNA815_12266}