M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28091

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28091 865 18.01 Mlig455_057437, Mlig455_057529

Neo: -

Age: -

 SLC25A1

Mlig455_057437 {REF} {Length: 2931} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=220.8]} {Human: ENSG00000100075, SLC25A1, solute carrier family 25 member 1, [RH, Score=392, Expect=4e-137]} {Mouse: ENSMUSG00000003528, Slc25a1, solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1, [RH, Score=395, Expect=1e-138]} {Dmel: FBgn0037912, sea, scheggia, [RH, Score=447, Expect=4e-159]} {Celegans: WBGene00010780, K11H3.3, Putative tricarboxylate transport protein, mitochondrial, [RH, Score=389, Expect=3e-136]} {Smed: dd_Smed_v6_8165_0_1, dd_Smed_v6_8165_0_1, [RH, Score=454, Expect=3e-162]} {RNA1509_58053} {RNA1310_9317} {RNA815_16804}

Mlig455_057529 {REF} {Length: 3062} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=220.8]} {Human: ENSG00000100075, SLC25A1, solute carrier family 25 member 1, [RH, Score=392, Expect=4e-137]} {Mouse: ENSMUSG00000003528, Slc25a1, solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1, [RH, Score=395, Expect=1e-138]} {Dmel: FBgn0037912, sea, scheggia, [RH, Score=447, Expect=4e-159]} {Celegans: WBGene00010780, K11H3.3, Putative tricarboxylate transport protein, mitochondrial, [RH, Score=389, Expect=3e-136]} {Smed: dd_Smed_v6_8165_0_1, dd_Smed_v6_8165_0_1, [RH, Score=454, Expect=3e-162]} {RNA1509_44858, RNA1509_58053} {RNA1310_9317, RNA1509_44858, RNA1509_58053} {RNA1509_44858, RNA1509_58053, RNA815_16804}

Cumulative graph for MligTC455_28091

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.2 4.511 0.84614 1.00000
RegionR2 -0.167 4.511 0.76645 1.00000
RegionR3 0.052 4.511 0.89783 1.00000
RegionR4 0.859 4.511 0.06654 0.23392
RegionR5 0.678 4.511 0.06949 0.23701
RegionR6 0.411 4.511 0.33589 0.92338
RegionR7 -2.111 4.511 0.00563 0.11873
RegionR8 0.078 4.511 0.91520 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.99 4.511 0.49595 1.00000
RegenerationR2 -0.061 4.511 0.89499 1.00000
RegenerationR3 0.254 4.511 0.60237 0.90909
RegenerationR4 -0.015 4.511 0.97273 1.00000
RegenerationR5 0.812 4.511 0.06231 0.39617
RegenerationR6 0.385 4.511 0.41664 0.74887
RegenerationBL 0.571 4.511 0.32708 0.69343
RegenerationTP 0.362 4.511 0.61826 0.97137


Genes with expression patterns similar to MligTC455_28091

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28091 865 18.01 Mlig455_057437, Mlig455_057529

Neo: -

Age: -

 SLC25A1 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_057437 {REF} {Length: 2931} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=220.8]} {Human: ENSG00000100075, SLC25A1, solute carrier family 25 member 1, [RH, Score=392, Expect=4e-137]} {Mouse: ENSMUSG00000003528, Slc25a1, solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1, [RH, Score=395, Expect=1e-138]} {Dmel: FBgn0037912, sea, scheggia, [RH, Score=447, Expect=4e-159]} {Celegans: WBGene00010780, K11H3.3, Putative tricarboxylate transport protein, mitochondrial, [RH, Score=389, Expect=3e-136]} {Smed: dd_Smed_v6_8165_0_1, dd_Smed_v6_8165_0_1, [RH, Score=454, Expect=3e-162]} {RNA1509_58053} {RNA1310_9317} {RNA815_16804}

Mlig455_057529 {REF} {Length: 3062} {TRANSSPLICED} {Pfam: Mitochondrial carrier protein [PF00153.29, score=220.8]} {Human: ENSG00000100075, SLC25A1, solute carrier family 25 member 1, [RH, Score=392, Expect=4e-137]} {Mouse: ENSMUSG00000003528, Slc25a1, solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1, [RH, Score=395, Expect=1e-138]} {Dmel: FBgn0037912, sea, scheggia, [RH, Score=447, Expect=4e-159]} {Celegans: WBGene00010780, K11H3.3, Putative tricarboxylate transport protein, mitochondrial, [RH, Score=389, Expect=3e-136]} {Smed: dd_Smed_v6_8165_0_1, dd_Smed_v6_8165_0_1, [RH, Score=454, Expect=3e-162]} {RNA1509_44858, RNA1509_58053} {RNA1310_9317, RNA1509_44858, RNA1509_58053} {RNA1509_44858, RNA1509_58053, RNA815_16804}
2. MligTC455_53153 381 7.95 Mlig455_040630

Neo: Neoblast

Age: Down-Up-Up, logFC(26M/2M)=0.652

Region-enriched R5: 1.222/0.01065

 TRIP13 2.516 0.837 - - - 0.709 0.970 Mlig455_040630 {REF} {Length: 2871} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=100.3]; AAA domain [PF13401.8, score=35.2]; AAA ATPase domain [PF13191.8, score=27.5]; AAA domain [PF13238.8, score=27.4]; Viral (Superfamily 1) RNA helicase [PF01443.20, score=23.3]} {Human: ENSG00000071539, TRIP13, thyroid hormone receptor interactor 13, [RH, Score=314, Expect=3e-102]} {Mouse: ENSMUSG00000021569, Trip13, thyroid hormone receptor interactor 13, [RH, Score=318, Expect=3e-104]} {Dmel: FBgn0051453, pch2, pachytene checkpoint 2, [RH, Score=259, Expect=3e-81]} {Celegans: WBGene00008641, pch-2, Putative pachytene checkpoint protein 2, [RH, Score=241, Expect=2e-74]} {Smed: dd_Smed_v6_46627_0_1, dd_Smed_v6_46627_0_1, [RH, Score=259, Expect=3e-84]} {RNA1509_17149} {RNA1310_22314} {RNA815_11155}
3. MligTC455_43966 972 20.25 Mlig455_070780

Neo: Int S/G2/M

Age: -

 EMC10 2.459 0.750 - - - 0.743 0.966 Mlig455_070780 {REF} {Length: 876} {TRANSSPLICED} {Human: ENSG00000161671, EMC10, ER membrane protein complex subunit 10, [RH, Score=75.5, Expect=1e-15]} {Mouse: ENSMUSG00000008140, Emc10, ER membrane protein complex subunit 10, [RH, Score=79.0, Expect=2e-17]} {Dmel: FBgn0052441, CG32441, [RH, Score=64.7, Expect=1e-12]} {Celegans: WBGene00012829, Y43F8C.7, [RH, Score=62.4, Expect=8e-12]} {Smed: dd_Smed_v6_2594_0_1, dd_Smed_v6_2594_0_1, [RH, Score=89.7, Expect=5e-22]} {RNA1509_27493, RNA1509_41782} {RNA1310_9560, RNA1509_41782} {RNA1509_41782, RNA815_13374}
4. MligTC455_27555 571 11.89 Mlig455_045152

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.234

Region-enriched R5: 1.064/0.00881

 MPHOSPH8 2.444 - - - 0.751 0.736 0.957 Mlig455_045152 {REF} {Length: 2584} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=43.2]; Chromo (CHRromatin Organisation MOdifier) domain [PF00385.26, score=38.9]; Ankyrin repeat [PF13606.8, score=29.3]; Ankyrin repeats (many copies) [PF13857.8, score=27.3]; Ankyrin repeats (many copies) [PF13637.8, score=26.3]; Ankyrin repeat [PF00023.32, score=23.7]} {Human: ENSG00000196199, MPHOSPH8, M-phase phosphoprotein 8, [Score=59.3, Expect=2e-08]} {Mouse: ENSMUSG00000079184, Mphosph8, M-phase phosphoprotein 8, [Score=62.0, Expect=2e-09]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=51.6, Expect=2e-06]} {Smed: dd_Smed_v6_10984_0_1, dd_Smed_v6_10984_0_1, [Score=55.5, Expect=9e-08]} {RNA1509_11349} {RNA1310_8020, RNA1509_11349} {RNA1509_11349, RNA815_18069}
5. MligTC455_18896 1136 23.67 Mlig455_057881

Neo: Irradiation

Age: Down-Up-Up

 DDX52 2.43 0.705 - - - 0.768 0.957 Mlig455_057881 {REF} {Length: 1741} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=115.0]; Helicase conserved C-terminal domain [PF00271.33, score=87.4]} {Human: ENSG00000278053, DDX52, DExD-box helicase 52, [RH, Score=289, Expect=6e-90]; ENSG00000277594, DDX52, DExD-box helicase 52, [RH, Score=288, Expect=2e-89]} {Mouse: ENSMUSG00000020677, Ddx52, DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, [RH, Score=289, Expect=3e-90]} {Dmel: FBgn0036754, CG5589, [RH, Score=278, Expect=5e-86]} {Celegans: WBGene00011032, R05D11.4, [RH, Score=253, Expect=6e-77]} {Smed: dd_Smed_v6_7870_0_1, dd_Smed_v6_7870_0_1, [RH, Score=246, Expect=2e-75]} {RNA1509_7314} {RNA1310_15587} {RNA815_6774}
6. MligTC455_18894 1132 23.59 Mlig455_021180

Neo: Irradiation

Age: -

 DDX52 2.425 0.703 - - - 0.765 0.957 Mlig455_021180 {REF} {Length: 1746} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=113.8]; Helicase conserved C-terminal domain [PF00271.33, score=87.4]} {Human: ENSG00000278053, DDX52, DExD-box helicase 52, [RH, Score=288, Expect=8e-90]; ENSG00000277594, DDX52, DExD-box helicase 52, [RH, Score=287, Expect=3e-89]} {Mouse: ENSMUSG00000020677, Ddx52, DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, [RH, Score=289, Expect=5e-90]} {Dmel: FBgn0036754, CG5589, [RH, Score=278, Expect=4e-86]} {Celegans: WBGene00011032, R05D11.4, [RH, Score=251, Expect=3e-76]} {Smed: dd_Smed_v6_7870_0_1, dd_Smed_v6_7870_0_1, [RH, Score=245, Expect=3e-75]} {RNA1509_7314} {RNA1310_15587, RNA1509_7314} {RNA1509_7314, RNA815_6774}
7. MligTC455_26502 510 10.62 Mlig455_049569

Neo: -

Age: -

Region-enriched R5: 1.399/0.00231

 NFX1 1.71 - - - 0.737 - 0.973 Mlig455_049569 {REF} {Length: 3854} {TRANSSPLICED} {Pfam: NF-X1 type zinc finger [PF01422.19, score=40.6]; R3H domain [PF01424.24, score=21.6]} {Human: ENSG00000086102, NFX1, nuclear transcription factor, X-box binding 1, [RH, Score=545, Expect=1e-176]} {Mouse: ENSMUSG00000028423, Nfx1, nuclear transcription factor, X-box binding 1, [RH, Score=534, Expect=1e-172]} {Dmel: FBgn0001978, stc, shuttle craft, [RH, Score=473, Expect=2e-149]} {Celegans: WBGene00007048, nfx-1, Transcriptional repressor NF-X1 homolog, [RH, Score=468, Expect=1e-147]} {Smed: dd_Smed_v6_4795_0_1, dd_Smed_v6_4795_0_1, [RH, Score=408, Expect=1e-126]} {RNA1509_5938} {RNA1310_3865.1} {RNA815_4979}
8. MligTC455_32229 358 7.46 Mlig455_056979

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.339/0.00367

 1.693 - - - 0.733 - 0.960 Mlig455_056979 {REF} {Length: 661} {TRANSSPLICED} {Pfam: Cupin domain [PF07883.13, score=42.6]; AraC-like ligand binding domain [PF02311.21, score=20.4]} {RNA1509_21844} {RNA1310_48404} {RNA815_27700}
9. MligTC455_50493 1857 38.69 Mlig455_031773, Mlig455_054712

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.446/0.00035

 AADAC, NCEH1 1.653 0.701 - - - - 0.952

Mlig455_031773 {REF} {Length: 2555} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF07859.15, score=167.2]; Nas2 N_terminal domain [PF18265.3, score=79.8]; PDZ domain [PF17820.3, score=26.6]; Steryl acetyl hydrolase [PF10340.11, score=21.6]; Carboxylesterase family [PF00135.30, score=20.6]; PDZ domain [PF13180.8, score=20.3]} {Human: ENSG00000144959, NCEH1, neutral cholesterol ester hydrolase 1, [RH, Score=132, Expect=9e-33]} {Mouse: ENSMUSG00000090527, Gm5538, predicted gene 5538, [Score=139, Expect=2e-35]; ENSMUSG00000091376, Aadacl2, arylacetamide deacetylase like 2, [Score=134, Expect=1e-33]; ENSMUSG00000095522, Gm8298, predicted gene 8298, [Score=133, Expect=2e-33]} {Dmel: FBgn0038166, CG9588, [Score=65.1, Expect=1e-11]} {Celegans: WBGene00017515, F16F9.4, [Score=151, Expect=5e-40]} {Smed: dd_Smed_v6_4674_0_1, dd_Smed_v6_4674_0_1, [Score=127, Expect=1e-31]} {RNA1509_19463} {RNA1310_22219} {RNA815_19539.1}

Mlig455_054712 {REF} {Length: 2552} {TRANSSPLICED} {Pfam: alpha/beta hydrolase fold [PF07859.15, score=167.2]; Nas2 N_terminal domain [PF18265.3, score=79.8]; PDZ domain [PF17820.3, score=28.4]; Steryl acetyl hydrolase [PF10340.11, score=23.4]; PDZ domain [PF13180.8, score=20.0]; Carboxylesterase family [PF00135.30, score=17.7]} {Human: ENSG00000114771, AADAC, arylacetamide deacetylase, [Score=138, Expect=5e-35]} {Mouse: ENSMUSG00000090527, Gm5538, predicted gene 5538, [Score=135, Expect=5e-34]; ENSMUSG00000095522, Gm8298, predicted gene 8298, [Score=130, Expect=2e-32]} {Dmel: FBgn0038166, CG9588, [RH, Score=82.8, Expect=1e-17]} {Celegans: WBGene00017515, F16F9.4, [Score=141, Expect=2e-36]} {Smed: dd_Smed_v6_4674_0_1, dd_Smed_v6_4674_0_1, [Score=114, Expect=4e-27]} {RNA1509_19463, RNA1509_38604} {RNA1310_22219, RNA1509_19463, RNA1509_38604} {RNA1509_19463, RNA1509_38604, RNA815_19539.1}
10. MligTC455_42540 212 4.41 Mlig455_001265

Neo: Irradiation

Age: -

Region-specific R4: 3.698

 0.966 - - - - - 0.966 Mlig455_001265 {REF} {Length: 3268} {TRANSSPLICED} {Pfam: Ankyrin repeats (many copies) [PF13857.8, score=23.0]; Ankyrin repeats (3 copies) [PF12796.9, score=21.8]} {Mouse: ENSMUSG00000041890, Git2, G protein-coupled receptor kinase-interactor 2, [Score=49.3, Expect=6e-06]} {RNA1509_36526} {RNA1310_6890} {RNA815_16000}
11. MligTC455_33167 416 8.66 Mlig455_063071

Neo: -

Age: -

Region-enriched R5: 1.683/0.00006

 SARM1 0.964 - - - - - 0.964 Mlig455_063071 {REF} {Length: 4307} {Pfam: TIR domain [PF13676.8, score=65.0]} {Human: ENSG00000004139, SARM1, sterile alpha and TIR motif containing 1, [Score=54.7, Expect=3e-07]} {Mouse: ENSMUSG00000050132, Sarm1, sterile alpha and HEAT/Armadillo motif containing 1, [Score=50.8, Expect=8e-06]} {RNA1509_29716, RNA1509_30913} {RNA1310_4887.1, RNA1509_29716, RNA1509_30913} {RNA1509_29716, RNA1509_30913, RNA815_10844}
12. MligTC455_46816 1372 28.59 Mlig455_005289

Neo: -

Age: logFC(26M/2M)=0.424

 GMPR2 0.963 - - - - - 0.963 Mlig455_005289 {REF} {Length: 1614} {TRANSSPLICED} {Pfam: IMP dehydrogenase / GMP reductase domain [PF00478.27, score=266.3]; FMN-dependent dehydrogenase [PF01070.20, score=21.1]} {Human: ENSG00000284752, GMPR2, guanosine monophosphate reductase 2, [RH, Score=550, Expect=0.0]; ENSG00000100938, GMPR2, guanosine monophosphate reductase 2, [RH, Score=550, Expect=0.0]; ENSG00000137198, GMPR, guanosine monophosphate reductase, [RH, Score=543, Expect=0.0]} {Mouse: ENSMUSG00000000253, Gmpr, guanosine monophosphate reductase, [RH, Score=547, Expect=0.0]; ENSMUSG00000002326, Gmpr2, guanosine monophosphate reductase 2, [RH, Score=540, Expect=0.0]} {Celegans: WBGene00017984, F32D1.5, GMP reductase, [RH, Score=527, Expect=0.0]} {RNA1509_9539} {RNA1310_11305.1, RNA1509_9539} {RNA1509_9539, RNA815_7734}
13. MligTC455_44674 1314 27.38 Mlig455_061139

Neo: -

Age: logFC(26M/2M)=-0.419

Region-enriched R5: 1.013/0.03021

 CIAO1 0.962 - - - - - 0.962 Mlig455_061139 {REF} {Length: 867} {Pfam: WD domain, G-beta repeat [PF00400.34, score=75.6]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=28.7]} {Human: ENSG00000144021, CIAO1, cytosolic iron-sulfur assembly component 1, [Score=115, Expect=4e-30]} {Mouse: ENSMUSG00000003662, Ciao1, cytosolic iron-sulfur protein assembly 1, [Score=115, Expect=1e-30]} {Dmel: FBgn0033972, Ciao1, [Score=105, Expect=6e-27]} {Celegans: WBGene00021899, Y54H5A.1, [Score=59.3, Expect=3e-10]} {Smed: dd_Smed_v6_6661_0_1, dd_Smed_v6_6661_0_1, [Score=117, Expect=2e-31]} {RNA1509_17029} {RNA1310_26308} {RNA815_12985}
14. MligTC455_12262 168 3.49 Mlig455_063424

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_063424 {REF} {Length: 433} {TRANSSPLICED} {Pfam: Complex 1 protein (LYR family) [PF05347.17, score=19.4]} {Dmel: FBgn0259718, CG42372, [RH, Score=43.1, Expect=3e-07]} {RNA1509_6986} {RNA1310_73413} {RNA815_43142}
15. MligTC455_20356 1023 21.3 Mlig455_046881

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.397

Region-enriched R5: 1.335/0.00006

 PEX13 0.954 - - - - - 0.954 Mlig455_046881 {REF} {Length: 1778} {TRANSSPLICED} {Pfam: Peroxin 13, N-terminal region [PF04088.15, score=58.5]; Variant SH3 domain [PF14604.8, score=31.4]; SH3 domain [PF00018.30, score=24.1]} {Human: ENSG00000162928, PEX13, peroxisomal biogenesis factor 13, [RH, Score=114, Expect=8e-28]} {Mouse: ENSMUSG00000020283, Pex13, peroxisomal biogenesis factor 13, [RH, Score=114, Expect=6e-28]} {Dmel: FBgn0033812, Pex13, Peroxin 13, [Score=62.0, Expect=3e-10]} {Celegans: WBGene00004198, prx-13, Probable peroxisomal membrane protein PEX13, [RH, Score=108, Expect=1e-26]} {Smed: dd_Smed_v6_2249_0_1, dd_Smed_v6_2249_0_1, [RH, Score=85.5, Expect=1e-18]} {RNA1509_25866} {RNA1310_13795} {RNA815_33367}
16. MligTC455_51810 292 6.09 Mlig455_055914

Neo: -

Age: logFC(26M/2M)=0.322

 RAB29 0.952 - - - 0.952 - - Mlig455_055914 {REF} {Length: 1941} {Pfam: Ras family [PF00071.24, score=68.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=19.6]} {Human: ENSG00000117280, RAB29, RAB29, member RAS oncogene family, [RH, Score=123, Expect=3e-36]} {Mouse: ENSMUSG00000019832, Rab32, RAB32, member RAS oncogene family, [Score=127, Expect=9e-37]} {Dmel: FBgn0002567, Rab32, [Score=112, Expect=3e-31]} {Celegans: WBGene00011083, glo-1, Gut granule LOss; Rab GTPase GLO-1, [Score=106, Expect=4e-29]} {Smed: dd_Smed_v6_2915_0_1, dd_Smed_v6_2915_0_1, [Score=134, Expect=3e-40]} {RNA1509_54279} {RNA1310_15012} {RNA815_20567}
17. MligTC455_42407 159 3.31 Mlig455_004618

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.951

 0.951 - - - - - 0.951 Mlig455_004618 {REF} {Length: 2128} {TRANSSPLICED} {Pfam: OST-HTH/LOTUS domain [PF12872.9, score=67.2]} {RNA1509_3101} {RNA1310_746.2} {RNA815_4502.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA