M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28127

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28127 79 1.65 Mlig455_055897

Neo: -

Age: -

 Mlig455_055897 {REF} {Length: 2601} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}

Cumulative graph for MligTC455_28127

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.022 1.622 0.91506 1.00000
RegionR2 1.944 1.622 0.19593 0.55394
RegionR3 0.713 1.622 0.63435 1.00000
RegionR4 0.738 1.622 0.48162 0.80925
RegionR5 -0.179 1.622 0.97574 1.00000
RegionR6 -1.502 1.622 1.00000 1.00000
RegionR7 -0.084 1.622 0.86072 1.00000
RegionR8 -1.608 1.622 0.72154 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -3.089 1.622 0.74299 1.00000
RegenerationR2 0.592 1.622 0.45930 0.85203
RegenerationR3 1.357 1.622 0.30720 0.73784
RegenerationR4 1.547 1.622 0.15128 0.57973
RegenerationR5 2.309 1.622 0.05592 0.37883
RegenerationR6 4.115 1.622 0.00779 0.10783
RegenerationBL 3.99 1.622 0.02095 0.15684
RegenerationTP 3.071 1.622 0.20982 0.65197


Genes with expression patterns similar to MligTC455_28127

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28127 79 1.65 Mlig455_055897

Neo: -

Age: -

 3 - - 1.000 1.000 1.000 - Mlig455_055897 {REF} {Length: 2601} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}
2. MligTC455_28131 113 2.34 Mlig455_033779

Neo: -

Age: -

 2.857 - - 0.959 0.960 0.938 - Mlig455_033779 {REF} {Length: 4189} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}
3. MligTC455_28136 87 1.82 Mlig455_001489

Neo: -

Age: -

 2.562 - - 0.899 0.950 0.713 - Mlig455_001489 {REF} {Length: 2208} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}
4. MligTC455_38084 643 13.39 Mlig455_044428, Mlig455_044462

Neo: -

Age: -

 ZNF347, ZNF850 1.731 - - - 0.960 0.771 -

Mlig455_044428 {REF} {Length: 5133} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=53.4]; C2H2-type zinc finger [PF13894.8, score=28.2]; Zinc-finger of C2H2 type [PF12874.9, score=19.4]} {Human: ENSG00000267041, ZNF850, zinc finger protein 850, [Score=54.7, Expect=6e-07]} {RNA1509_7797} {RNA1310_1145} {RNA815_319.1}

Mlig455_044462 {REF} {Length: 6499} {Pfam: Zinc finger, C2H2 type [PF00096.28, score=88.8]; C2H2-type zinc finger [PF13894.8, score=73.9]; C2H2-type zinc finger [PF13912.8, score=39.0]; C2HE / C2H2 / C2HC zinc-binding finger [PF16278.7, score=19.0]} {Human: ENSG00000197937, ZNF347, zinc finger protein 347, [Score=80.5, Expect=1e-14]; ENSG00000281709, ZNF197, zinc finger protein 197, [Score=78.2, Expect=9e-14]; ENSG00000186448, ZNF197, zinc finger protein 197, [Score=78.2, Expect=9e-14]} {Mouse: ENSMUSG00000034538, Zfp418, zinc finger protein 418, [Score=72.8, Expect=2e-12]; ENSMUSG00000058883, Zfp708, zinc finger protein 708, [Score=72.0, Expect=3e-12]; ENSMUSG00000037640, Zfp60, zinc finger protein 60, [Score=70.9, Expect=9e-12]} {Dmel: FBgn0261679, CG42726, [Score=57.0, Expect=7e-08]} {Celegans: WBGene00003847, blmp-1, B lymphocyte-induced maturation protein 1 homolog, [Score=52.0, Expect=3e-06]} {RNA1509_47351} {RNA1310_1145} {RNA815_319.1}
5. MligTC455_22837 484 10.08 Mlig455_005509, Mlig455_006648, Mlig455_006694, Mlig455_010631, Mlig455_023501, Mlig455_030951, Mlig455_032677

Neo: -

Age: Up-Down-Up

 0.976 - - - 0.976 - -

Mlig455_005509 {REF} {Length: 1003} {TRANSSPLICED} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_006648 {REF} {Length: 2757} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_006694 {REF} {Length: 1368} {RNA1310_105426} {RNA815_46313}

Mlig455_010631 {REF} {Length: 1245} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_023501 {REF} {Length: 1139} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_030951 {REF} {Length: 1003} {TRANSSPLICED} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}

Mlig455_032677 {REF} {Length: 1003} {TRANSSPLICED} {RNA1509_13897} {RNA1310_19938.1} {RNA815_11593}
6. MligTC455_18848 172 3.59 Mlig455_019290

Neo: Int S/G2/M

Age: -

Regeneration-enriched BL: 4.472
Regeneration-enriched R6: 3.266
Regeneration-enriched R4: 3.038

 0.962 - - - 0.962 - - Mlig455_019290 {REF} {Length: 1440} {TRANSSPLICED} {Pfam: SUZ domain [PF12752.9, score=43.1]} {RNA1509_29907, RNA1509_41034} {RNA1310_22799, RNA1509_29907, RNA1509_41034} {RNA1509_29907, RNA1509_41034, RNA815_9711.1}
7. MligTC455_41648 3350 69.79 Mlig455_050737

Neo: -

Age: -

 0.959 - - - - 0.959 - Mlig455_050737 {REF} {Length: 2857} {Pfam: Selenoprotein SelK_SelG [PF10961.10, score=59.6]} {RNA1509_13454, RNA1509_15435, RNA1509_16221, RNA1509_22670, RNA1509_3706, RNA1509_41990} {RNA1310_33681.1, RNA1509_13454, RNA1509_15435, RNA1509_16221, RNA1509_22670, RNA1509_3706, RNA1509_41990} {RNA1509_13454, RNA1509_15435, RNA1509_16221, RNA1509_22670, RNA1509_3706, RNA1509_41990, RNA815_16680}
8. MligTC455_43057 148 3.08 Mlig455_037020

Neo: -

Age: Down-Up-Up

 0.959 - - - - 0.959 - Mlig455_037020 {REF} {Length: 3493} {RNA1509_24680} {RNA1310_17561} {RNA815_8295.1}
9. MligTC455_21703 208 4.34 Mlig455_024187

Neo: -

Age: -

 0.958 - - - 0.958 - - Mlig455_024187 {REF} {Length: 1020} {NoTransDecoderORF} {RNA1509_42051} {RNA1310_26452} {RNA815_50612}
10. MligTC455_30283 243 5.06 Mlig455_050829

Neo: -

Age: -

 0.954 - - - - 0.954 - Mlig455_050829 {REF} {Length: 1893} {NoTransDecoderORF} {RNA1509_32404} {RNA1310_58903} {RNA815_47584}
11. MligTC455_28228 73 1.51 Mlig455_039334

Neo: -

Age: -

 0.953 - - 0.953 - - - Mlig455_039334 {REF} {Length: 1848} {NoTransDecoderORF} {RNA1509_13222} {RNA1310_34828.2} {RNA815_11419.1}
12. MligTC455_44214 826 17.2 Mlig455_051977

Neo: -

Age: logFC(26M/2M)=-0.586

 TRPM3 0.951 - - - 0.951 - - Mlig455_051977 {REF} {Length: 7693} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=181.9]; Ankyrin repeats (many copies) [PF13637.8, score=159.2]; Ankyrin repeat [PF13606.8, score=83.5]; Ankyrin repeats (many copies) [PF13857.8, score=69.7]; Ankyrin repeat [PF00023.32, score=40.0]; Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily [PF13669.8, score=19.8]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=88.6, Expect=1e-16]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=88.6, Expect=7e-17]; ENSMUSG00000030523, Trpm1, transient receptor potential cation channel, subfamily M, member 1, [Score=84.3, Expect=1e-15]} {Dmel: FBgn0016920, nompC, no mechanoreceptor potential C, [Score=77.8, Expect=1e-13]} {Celegans: WBGene00006616, trp-4, TRP (Transient receptor potential) channel family, [Score=89.7, Expect=2e-17]} {Smed: dd_Smed_v6_26251_0_1, dd_Smed_v6_26251_0_1, [Score=115, Expect=1e-25]} {RNA1509_3976, RNA1509_45452, RNA1509_49658} {RNA1310_537, RNA1509_3976, RNA1509_45452, RNA1509_49658} {RNA1509_3976, RNA1509_45452, RNA1509_49658, RNA815_57.1}
13. MligTC455_29537 394 8.21 Mlig455_037986, Mlig455_043226, Mlig455_043771, Mlig455_044190, Mlig455_068627

Neo: -

Age: -

 0.95 - - - - 0.950 -

Mlig455_037986 {REF} {Length: 729} {RNA1310_48817} {RNA815_318.1}

Mlig455_043226 {REF} {Length: 610} {NoTransDecoderORF} {RNA1509_57867} {RNA1310_1374.1} {RNA815_43995.1}

Mlig455_043771 {REF} {Length: 5753} {RNA1509_40552, RNA1509_57189} {RNA1310_1374.1, RNA1509_40552, RNA1509_57189} {RNA1509_40552, RNA1509_57189, RNA815_318.1}

Mlig455_044190 {REF} {Length: 804} {NoTransDecoderORF} {RNA1509_57867} {RNA1310_1374.1} {RNA815_43995.1}

Mlig455_068627 {REF} {Length: 1191} {NoTransDecoderORF} {RNA1509_40552} {RNA1310_48817} {RNA815_48299}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA