TomoSeq data search

Data search

Results for MligTC455_28366

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_28366	307	6.40	Mlig455_065787, Mlig455_067531	Neo: Int S/G2/M Age: Up-Down-Down	RTL1	Mlig455_065787 {REF} {Length: 9629} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=33.1]; 'Cold-shock' DNA-binding domain [PF00313.24, score=30.5]; Aspartyl protease [PF13650.8, score=22.1]; Zinc knuckle [PF13696.8, score=22.1]; Zinc knuckle [PF00098.25, score=21.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=21.5]; Aspartyl protease [PF09668.12, score=20.6]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=51.2, Expect=3e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=125, Expect=6e-30]} {RNA1509_4878} {RNA1310_542.1, RNA1509_4878} {RNA1509_4878, RNA815_66.1} Mlig455_067531 {REF} {Length: 9936} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.2]; Integrase core domain [PF00665.28, score=47.0]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.9]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.3]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.8, Expect=3e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=9e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=317, Expect=2e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28366

307

6.40

Mlig455_065787, Mlig455_067531

Neo: Int S/G2/M

Age: Up-Down-Down

RTL1

Mlig455_065787 {REF} {Length: 9629} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=33.1]; 'Cold-shock' DNA-binding domain [PF00313.24, score=30.5]; Aspartyl protease [PF13650.8, score=22.1]; Zinc knuckle [PF13696.8, score=22.1]; Zinc knuckle [PF00098.25, score=21.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=21.5]; Aspartyl protease [PF09668.12, score=20.6]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=51.2, Expect=3e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=125, Expect=6e-30]} {RNA1509_4878} {RNA1310_542.1, RNA1509_4878} {RNA1509_4878, RNA815_66.1}

Mlig455_067531 {REF} {Length: 9936} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.2]; Integrase core domain [PF00665.28, score=47.0]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.9]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.3]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.8, Expect=3e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=9e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=317, Expect=2e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}

Cumulative graph for MligTC455_28366

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.867	3.178	0.70013	1.00000
RegionR2	-0.227	3.178	0.78145	1.00000
RegionR3	-0.434	3.178	0.50747	0.99745
RegionR4	-0.279	3.178	0.72420	1.00000
RegionR5	0.476	3.178	0.35199	0.70157
RegionR6	-0.542	3.178	0.42698	0.99212
RegionR7	0.841	3.178	0.30352	0.93870
RegionR8	1.033	3.178	0.32822	0.96136

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	1.144	3.178	0.67756	1.00000
RegenerationR2	1.177	3.178	0.03833	0.32308
RegenerationR3	0.577	3.178	0.40007	0.80260
RegenerationR4	0.121	3.178	0.85907	1.00000
RegenerationR5	0.226	3.178	0.69850	0.95097
RegenerationR6	1.965	3.178	0.00210	0.05228
RegenerationBL	0.444	3.178	0.57229	0.92560
RegenerationTP	-0.533	3.178	0.53955	0.92576

Genes with expression patterns similar to MligTC455_28366

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28366	307	6.4	Mlig455_065787, Mlig455_067531	Neo: Int S/G2/M Age: Up-Down-Down	RTL1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_065787 {REF} {Length: 9629} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=33.1]; 'Cold-shock' DNA-binding domain [PF00313.24, score=30.5]; Aspartyl protease [PF13650.8, score=22.1]; Zinc knuckle [PF13696.8, score=22.1]; Zinc knuckle [PF00098.25, score=21.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=21.5]; Aspartyl protease [PF09668.12, score=20.6]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=51.2, Expect=3e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=125, Expect=6e-30]} {RNA1509_4878} {RNA1310_542.1, RNA1509_4878} {RNA1509_4878, RNA815_66.1} Mlig455_067531 {REF} {Length: 9936} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=102.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=102.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=95.2]; Integrase core domain [PF00665.28, score=47.0]; Integrase zinc binding domain [PF17921.3, score=36.9]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.1]; Zinc knuckle [PF13696.8, score=21.3]; Zinc knuckle [PF00098.25, score=20.9]; Aspartyl protease [PF13650.8, score=20.8]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.3]; H2C2 zinc finger [PF09337.12, score=19.7]; Aspartyl protease [PF09668.12, score=19.1]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.8, Expect=3e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=9e-06]} {Smed: dd_Smed_v6_1574_6_44, dd_Smed_v6_1574_6_44, [Score=317, Expect=2e-94]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}
2.	MligTC455_28363	198	4.11	Mlig455_054836	Neo: - Age: Down-Down-Down	RTL1	5.598	0.969	0.942	0.869	0.905	0.956	0.957	Mlig455_054836 {REF} {Length: 8036} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=103.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.9]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=28.0]; Zinc knuckle [PF13696.8, score=21.6]; Aspartyl protease [PF13650.8, score=21.5]; Zinc knuckle [PF00098.25, score=21.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.9]; Aspartyl protease [PF09668.12, score=20.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.0, Expect=4e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=6e-06]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=270, Expect=9e-79]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_28366

307

6.4

Mlig455_065787, Mlig455_067531

Neo: Int S/G2/M

Age: Up-Down-Down

RTL1

1.000

MligTC455_28363

198

4.11

Mlig455_054836

Neo: -

Age: Down-Down-Down

RTL1

5.598

0.969

0.942

0.869

0.905

0.956

0.957

Mlig455_054836 {REF} {Length: 8036} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=103.0]; 'Cold-shock' DNA-binding domain [PF00313.24, score=29.9]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=28.0]; Zinc knuckle [PF13696.8, score=21.6]; Aspartyl protease [PF13650.8, score=21.5]; Zinc knuckle [PF00098.25, score=21.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=20.9]; Aspartyl protease [PF09668.12, score=20.0]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=99.0, Expect=4e-20]} {Mouse: ENSMUSG00000033508, Asprv1, aspartic peptidase, retroviral-like 1, [Score=50.8, Expect=6e-06]} {Smed: dd_Smed_v6_1574_6_43, dd_Smed_v6_1574_6_43, [Score=270, Expect=9e-79]} {RNA1509_4878} {RNA1310_542.1} {RNA815_66.1}