M. lignano Tomo-Seq
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Results for MligTC455_28374

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28374 1066 22.22 Mlig455_034264, Mlig455_067314

Neo: -

Age: -

Region-enriched R5: 1.568/0.00027

Mlig455_034264 {REF} {Length: 984} {TRANSSPLICED} {RNA1509_43185, RNA1509_47947} {RNA1310_27620, RNA1509_43185} {RNA1509_43185, RNA815_36336}

Mlig455_067314 {REF} {Length: 3929} {RNA1509_20759, RNA1509_52801} {RNA1310_20178, RNA1509_52801} {RNA1509_52801, RNA815_35358}

Cumulative graph for MligTC455_28374

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.158 4.718 0.04581 0.51236
RegionR2 0.497 4.718 0.32492 0.71713
RegionR3 0.791 4.718 0.05715 0.42097
RegionR4 0.913 4.718 0.05678 0.21027
RegionR5 1.568 4.718 0.00001 0.00027
RegionR6 0.504 4.718 0.25333 0.83885
RegionR7 -0.831 4.718 0.24152 0.86650
RegionR8 -0.285 4.718 0.70427 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 3.204 4.718 0.07907 0.77084
RegenerationR2 0.453 4.718 0.21351 0.66075
RegenerationR3 0.04 4.718 0.92169 1.00000
RegenerationR4 0.491 4.718 0.23968 0.68838
RegenerationR5 0.204 4.718 0.57588 0.89843
RegenerationR6 0.574 4.718 0.16559 0.49604
RegenerationBL 1.429 4.718 0.00156 0.03067
RegenerationTP 1.967 4.718 0.00013 0.01400


Genes with expression patterns similar to MligTC455_28374

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28374 1066 22.22 Mlig455_034264, Mlig455_067314

Neo: -

Age: -

Region-enriched R5: 1.568/0.00027

 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_034264 {REF} {Length: 984} {TRANSSPLICED} {RNA1509_43185, RNA1509_47947} {RNA1310_27620, RNA1509_43185} {RNA1509_43185, RNA815_36336}

Mlig455_067314 {REF} {Length: 3929} {RNA1509_20759, RNA1509_52801} {RNA1310_20178, RNA1509_52801} {RNA1509_52801, RNA815_35358}
2. MligTC455_28373 1456 30.33 Mlig455_034300, Mlig455_034302

Neo: -

Age: -

Region-enriched R5: 1.071/0.01206

 4.455 0.949 0.977 0.732 0.987 0.810 -

Mlig455_034300 {REF} {Length: 2908} {TRANSSPLICED} {RNA1509_15691} {RNA1310_5101.1} {RNA815_12944}

Mlig455_034302 {REF} {Length: 3206} {TRANSSPLICED} {RNA1509_6961} {RNA1310_21901} {RNA815_16853}
3. MligTC455_24265 275 5.73 Mlig455_046658

Neo: -

Age: Up-Down-Down

 1.713 0.761 - - 0.952 - - Mlig455_046658 {REF} {Length: 4365} {RNA1509_44930} {RNA1310_21062.1, RNA1509_44930} {RNA1509_44930, RNA815_17193.1}
4. MligTC455_11128 537 11.18 Mlig455_035510

Neo: -

Age: Down-Up-Down

Region-enriched R4: 1.464/0.01979
Region-enriched R3: 1.367/0.01663

 0.964 - - 0.964 - - - Mlig455_035510 {REF} {Length: 905} {Pfam: HEAT repeats [PF13646.8, score=35.1]; HEAT repeat [PF02985.24, score=26.3]} {RNA1509_36467} {RNA1310_32199.1} {RNA815_22764}
5. MligTC455_32338 2035 42.39 Mlig455_029302, Mlig455_029324, Mlig455_058867

Neo: -

Age: -

 ZMYND8 0.958 - - - 0.958 - -

Mlig455_029302 {REF} {Length: 3403} {Pfam: MYND finger [PF01753.20, score=19.3]} {Human: ENSG00000101040, ZMYND8, zinc finger MYND-type containing 8, [Score=127, Expect=2e-30]} {Mouse: ENSMUSG00000039671, Zmynd8, zinc finger, MYND-type containing 8, [Score=130, Expect=1e-31]} {Dmel: FBgn0039863, CG1815, [Score=101, Expect=2e-22]} {Celegans: WBGene00017757, bra-2, BMP Receptor Associated protein family, [Score=72.0, Expect=3e-14]} {Smed: dd_Smed_v6_8799_0_2, dd_Smed_v6_8799_0_2, [RH, Score=86.7, Expect=3e-19]} {RNA1509_23732} {RNA1310_8252.1} {RNA815_15296}

Mlig455_029324 {REF} {Length: 3062} {Pfam: MYND finger [PF01753.20, score=19.3]} {Human: ENSG00000101040, ZMYND8, zinc finger MYND-type containing 8, [Score=127, Expect=2e-30]} {Mouse: ENSMUSG00000039671, Zmynd8, zinc finger, MYND-type containing 8, [Score=130, Expect=2e-31]} {Dmel: FBgn0039863, CG1815, [Score=101, Expect=3e-22]} {Celegans: WBGene00017757, bra-2, BMP Receptor Associated protein family, [Score=71.6, Expect=3e-14]} {Smed: dd_Smed_v6_8799_0_2, dd_Smed_v6_8799_0_2, [RH, Score=86.7, Expect=3e-19]} {RNA1509_23732, RNA1509_54921} {RNA1310_8252.1, RNA1509_23732, RNA1509_54921} {RNA1509_23732, RNA1509_54921, RNA815_15296}

Mlig455_058867 {REF} {Length: 3248} {Pfam: MYND finger [PF01753.20, score=19.3]} {Human: ENSG00000101040, ZMYND8, zinc finger MYND-type containing 8, [Score=126, Expect=3e-30]} {Mouse: ENSMUSG00000039671, Zmynd8, zinc finger, MYND-type containing 8, [Score=129, Expect=3e-31]} {Dmel: FBgn0039863, CG1815, [Score=101, Expect=3e-22]} {Celegans: WBGene00017757, bra-2, BMP Receptor Associated protein family, [Score=70.9, Expect=7e-14]} {Smed: dd_Smed_v6_8799_0_2, dd_Smed_v6_8799_0_2, [RH, Score=85.1, Expect=1e-18]} {RNA1509_23732} {RNA1310_8252.1} {RNA815_15296}
6. MligTC455_50137 628 13.08 Mlig455_005635, Mlig455_005679

Neo: -

Age: Down-Up-Up

 CAPN3, CAPN9 0.957 - - - 0.957 - -

Mlig455_005635 {REF} {Length: 3216} {Pfam: Calpain family cysteine protease [PF00648.23, score=409.5]; Calpain large subunit, domain III [PF01067.24, score=135.4]; EF hand [PF00036.34, score=33.7]; EF-hand domain pair [PF13499.8, score=27.9]; EF-hand domain [PF13405.8, score=26.5]; EF-hand domain pair [PF13833.8, score=26.3]} {Human: ENSG00000092529, CAPN3, calpain 3, [Score=573, Expect=0.0]; ENSG00000135773, CAPN9, calpain 9, [Score=560, Expect=0.0]} {Mouse: ENSMUSG00000031981, Capn9, calpain 9, [Score=570, Expect=0.0]; ENSMUSG00000079110, Capn3, calpain 3, [Score=559, Expect=0.0]} {Dmel: FBgn0025866, CalpB, Calpain-B, [Score=573, Expect=0.0]} {Celegans: WBGene00000542, clp-1, Calpain clp-1, [Score=442, Expect=9e-145]} {Smed: dd_Smed_v6_1752_0_4, dd_Smed_v6_1752_0_4, [Score=719, Expect=0.0]} {RNA1509_37893, RNA1509_52146, RNA1509_58534} {RNA1310_4156, RNA1509_37893, RNA1509_52146, RNA1509_58534} {RNA1509_37893, RNA1509_52146, RNA1509_58534, RNA815_1243.1}

Mlig455_005679 {REF} {Length: 1830} {Pfam: Calpain family cysteine protease [PF00648.23, score=146.2]} {Human: ENSG00000135773, CAPN9, calpain 9, [Score=128, Expect=2e-33]; ENSG00000137225, CAPN11, calpain 11, [Score=126, Expect=9e-33]; ENSG00000092529, CAPN3, calpain 3, [Score=124, Expect=7e-32]; ENSG00000014216, CAPN1, calpain 1, [Score=123, Expect=1e-31]; ENSG00000203697, CAPN8, calpain 8, [Score=122, Expect=8e-32]} {Mouse: ENSMUSG00000031981, Capn9, calpain 9, [Score=132, Expect=4e-35]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=150, Expect=6e-42]} {Celegans: WBGene00000542, clp-1, Calpain clp-1, [Score=125, Expect=8e-33]} {Smed: dd_Smed_v6_1971_0_2, dd_Smed_v6_1971_0_2, [Score=208, Expect=5e-63]} {RNA1509_58534} {RNA1310_4156} {RNA815_1243.2}
7. MligTC455_23774 749 15.6 Mlig455_051848, Mlig455_051861

Neo: -

Age: -

Region-enriched R7: 1.943/0.04725

 0.954 - - - 0.954 - -

Mlig455_051848 {REF} {Length: 1676} {RNA1509_43013} {RNA1310_12180.2} {RNA815_6222}

Mlig455_051861 {REF} {Length: 1572} {RNA1509_43013} {RNA1310_12180.2} {RNA815_6222}

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