M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28420

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28420 444 9.25 Mlig455_016948

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.779

 AASS Mlig455_016948 {REF} {Length: 3955} {Pfam: Saccharopine dehydrogenase C-terminal domain [PF16653.7, score=277.1]; Alanine dehydrogenase/PNT, N-terminal domain [PF05222.17, score=99.8]; Saccharopine dehydrogenase NADP binding domain [PF03435.20, score=60.6]; Alanine dehydrogenase/PNT, C-terminal domain [PF01262.23, score=34.2]} {Human: ENSG00000008311, AASS, aminoadipate-semialdehyde synthase, [RH, Score=959, Expect=0.0]} {Mouse: ENSMUSG00000029695, Aass, aminoadipate-semialdehyde synthase, [RH, Score=962, Expect=0.0]} {Dmel: FBgn0025687, LKRSDH, Lysine ketoglutarate reductase/saccharopine dehydrogenase, [RH, Score=1025, Expect=0.0]} {Celegans: WBGene00019819, R02D3.1, [RH, Score=959, Expect=0.0]} {Smed: dd_Smed_v6_2894_0_1, dd_Smed_v6_2894_0_1, [RH, Score=1155, Expect=0.0]} {RNA1509_15904, RNA1509_17027, RNA1509_3309, RNA1509_40679} {RNA1310_2643.1, RNA1509_15904, RNA1509_17027, RNA1509_3309, RNA1509_40679} {RNA1509_15904, RNA1509_17027, RNA1509_3309, RNA1509_40679, RNA815_869}

Cumulative graph for MligTC455_28420

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.663 3.622 0.30181 0.95169
RegionR2 1.908 3.622 0.00704 0.08040
RegionR3 0.841 3.622 0.11876 0.59678
RegionR4 -1.233 3.622 0.10333 0.31412
RegionR5 -0.693 3.622 0.21212 0.50928
RegionR6 -0.591 3.622 0.30247 0.89359
RegionR7 0.021 3.622 0.96862 1.00000
RegionR8 1.409 3.622 0.05302 0.44888

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 2.184 3.622 0.35592 1.00000
RegenerationR2 -0.856 3.622 0.14945 0.58269
RegenerationR3 -0.523 3.622 0.45223 0.83282
RegenerationR4 -0.619 3.622 0.41079 0.82097
RegenerationR5 -0.581 3.622 0.38953 0.79180
RegenerationR6 -1.557 3.622 0.06870 0.32853
RegenerationBL -1.365 3.622 0.17589 0.50297
RegenerationTP -0.5 3.622 0.54398 0.92917


Genes with expression patterns similar to MligTC455_28420

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28420 444 9.25 Mlig455_016948

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.779

 AASS 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_016948 {REF} {Length: 3955} {Pfam: Saccharopine dehydrogenase C-terminal domain [PF16653.7, score=277.1]; Alanine dehydrogenase/PNT, N-terminal domain [PF05222.17, score=99.8]; Saccharopine dehydrogenase NADP binding domain [PF03435.20, score=60.6]; Alanine dehydrogenase/PNT, C-terminal domain [PF01262.23, score=34.2]} {Human: ENSG00000008311, AASS, aminoadipate-semialdehyde synthase, [RH, Score=959, Expect=0.0]} {Mouse: ENSMUSG00000029695, Aass, aminoadipate-semialdehyde synthase, [RH, Score=962, Expect=0.0]} {Dmel: FBgn0025687, LKRSDH, Lysine ketoglutarate reductase/saccharopine dehydrogenase, [RH, Score=1025, Expect=0.0]} {Celegans: WBGene00019819, R02D3.1, [RH, Score=959, Expect=0.0]} {Smed: dd_Smed_v6_2894_0_1, dd_Smed_v6_2894_0_1, [RH, Score=1155, Expect=0.0]} {RNA1509_15904, RNA1509_17027, RNA1509_3309, RNA1509_40679} {RNA1310_2643.1, RNA1509_15904, RNA1509_17027, RNA1509_3309, RNA1509_40679} {RNA1509_15904, RNA1509_17027, RNA1509_3309, RNA1509_40679, RNA815_869}
2. MligTC455_28421 451 9.39 Mlig455_017036

Neo: -

Age: logFC(26M/2M)=-0.338

 AASS 5.929 1.000 0.999 0.993 0.941 0.997 0.999 Mlig455_017036 {REF} {Length: 3803} {Pfam: Saccharopine dehydrogenase C-terminal domain [PF16653.7, score=276.6]; Alanine dehydrogenase/PNT, N-terminal domain [PF05222.17, score=99.8]; Saccharopine dehydrogenase NADP binding domain [PF03435.20, score=61.2]; Alanine dehydrogenase/PNT, C-terminal domain [PF01262.23, score=37.5]} {Human: ENSG00000008311, AASS, aminoadipate-semialdehyde synthase, [RH, Score=959, Expect=0.0]} {Mouse: ENSMUSG00000029695, Aass, aminoadipate-semialdehyde synthase, [RH, Score=961, Expect=0.0]} {Dmel: FBgn0025687, LKRSDH, Lysine ketoglutarate reductase/saccharopine dehydrogenase, [RH, Score=1023, Expect=0.0]} {Celegans: WBGene00019819, R02D3.1, [RH, Score=958, Expect=0.0]} {Smed: dd_Smed_v6_2894_0_1, dd_Smed_v6_2894_0_1, [RH, Score=1156, Expect=0.0]} {RNA1509_3309} {RNA1310_2643.1} {RNA815_869}
3. MligTC455_52689 1538 32.04 Mlig455_021076

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.447

 CCNG1 2.611 - 0.739 - - 0.914 0.958 Mlig455_021076 {REF} {Length: 3931} {Pfam: Cyclin, N-terminal domain [PF00134.25, score=48.8]} {Human: ENSG00000113328, CCNG1, cyclin G1, [Score=89.4, Expect=2e-19]; ENSG00000138764, CCNG2, cyclin G2, [Score=89.0, Expect=3e-19]} {Mouse: ENSMUSG00000029385, Ccng2, cyclin G2, [Score=96.3, Expect=1e-21]} {Dmel: FBgn0039858, CycG, Cyclin G, [Score=92.0, Expect=8e-20]} {Smed: dd_Smed_v6_6866_0_1, dd_Smed_v6_6866_0_1, [Score=112, Expect=6e-28]} {RNA1509_14519, RNA1509_26087} {RNA1310_3032.1, RNA1509_14519, RNA1509_26087} {RNA1509_14519, RNA1509_26087, RNA815_5725}
4. MligTC455_29850 34 0.72 Mlig455_056420

Neo: -

Age: -

 1.842 - - - 0.980 - 0.862 Mlig455_056420 {REF} {Length: 636} {Pfam: Transcription factor TFIID (or TATA-binding protein, TBP) [PF00352.23, score=38.1]} {Smed: dd_Smed_v6_3242_0_1, dd_Smed_v6_3242_0_1, [Score=42.4, Expect=9e-06]} {RNA1509_13774} {RNA1310_41660} {RNA815_55778}
5. MligTC455_43002 147 3.07 Mlig455_004304

Neo: -

Age: Up-Down-Down

 GLUD1 1.732 0.778 - - 0.954 - - Mlig455_004304 {REF} {Length: 2088} {Pfam: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase [PF00208.23, score=134.8]} {Human: ENSG00000148672, GLUD1, glutamate dehydrogenase 1, [Score=288, Expect=8e-94]; ENSG00000182890, GLUD2, glutamate dehydrogenase 2, [Score=285, Expect=5e-93]} {Mouse: ENSMUSG00000021794, Glud1, glutamate dehydrogenase 1, [Score=288, Expect=5e-94]} {Dmel: FBgn0001098, Gdh, Glutamate dehydrogenase, [Score=288, Expect=2e-96]} {Celegans: WBGene00014095, gdh-1, Glutamate dehydrogenase, [Score=240, Expect=4e-76]} {Smed: dd_Smed_v6_932_0_1, dd_Smed_v6_932_0_1, [Score=277, Expect=1e-90]} {RNA1509_18938, RNA1509_30743} {RNA1310_2661.2, RNA1509_18938} {RNA1509_18938, RNA815_713.2}
6. MligTC455_52688 3728 77.66 Mlig455_007709, Mlig455_021042

Neo: -

Age: logFC(26M/2M)=-0.638

 CCNG1, CCNG2 1.701 - 0.748 - - - 0.953

Mlig455_007709 {REF} {Length: 4050} {Pfam: Cyclin, N-terminal domain [PF00134.25, score=48.8]} {Human: ENSG00000113328, CCNG1, cyclin G1, [Score=89.4, Expect=2e-19]; ENSG00000138764, CCNG2, cyclin G2, [Score=89.0, Expect=3e-19]} {Mouse: ENSMUSG00000029385, Ccng2, cyclin G2, [Score=96.3, Expect=1e-21]} {Dmel: FBgn0039858, CycG, Cyclin G, [Score=92.0, Expect=8e-20]} {Smed: dd_Smed_v6_6866_0_1, dd_Smed_v6_6866_0_1, [Score=112, Expect=6e-28]} {RNA1509_12052, RNA1509_15456, RNA1509_19486, RNA1509_23028, RNA1509_23511, RNA1509_24441, RNA1509_4826, RNA1509_9187} {RNA1310_3032.1, RNA1509_12052, RNA1509_15456, RNA1509_19486, RNA1509_23028, RNA1509_23511, RNA1509_24441, RNA1509_4826, RNA1509_9187} {RNA1509_12052, RNA1509_15456, RNA1509_19486, RNA1509_23028, RNA1509_23511, RNA1509_24441, RNA1509_4826, RNA1509_9187, RNA815_4720.1}

Mlig455_021042 {REF} {Length: 4076} {Pfam: Cyclin, N-terminal domain [PF00134.25, score=49.0]} {Human: ENSG00000138764, CCNG2, cyclin G2, [Score=90.1, Expect=1e-19]; ENSG00000113328, CCNG1, cyclin G1, [Score=89.0, Expect=3e-19]} {Mouse: ENSMUSG00000029385, Ccng2, cyclin G2, [Score=97.4, Expect=5e-22]} {Dmel: FBgn0039858, CycG, Cyclin G, [Score=90.9, Expect=2e-19]} {Smed: dd_Smed_v6_6866_0_1, dd_Smed_v6_6866_0_1, [Score=113, Expect=4e-28]} {RNA1509_20782, RNA1509_2957} {RNA1310_3032.1, RNA1509_20782, RNA1509_2957} {RNA1509_20782, RNA1509_2957, RNA815_5725}
7. MligTC455_16149 59 1.22 Mlig455_059983

Neo: -

Age: logFC(26M/2M)=1.934

 KLHDC8A 1.68 - - - 0.959 - 0.721 Mlig455_059983 {REF} {Length: 1797} {Pfam: Kelch motif [PF13964.8, score=56.9]; Kelch motif [PF01344.27, score=52.7]; Kelch motif [PF07646.17, score=37.5]; Galactose oxidase, central domain [PF13418.8, score=35.1]; Kelch motif [PF13854.8, score=27.6]} {Human: ENSG00000162873, KLHDC8A, kelch domain containing 8A, [Score=58.5, Expect=2e-09]} {Mouse: ENSMUSG00000042115, Klhdc8a, kelch domain containing 8A, [Score=63.9, Expect=1e-10]} {Smed: dd_Smed_v6_14507_0_1, dd_Smed_v6_14507_0_1, [RH, Score=209, Expect=4e-63]} {RNA1509_58319} {RNA1310_20213} {RNA815_8052}
8. MligTC455_35933 19 0.4 Mlig455_033271

Neo: -

Age: -

 0.971 - - - 0.971 - - Mlig455_033271 {REF} {Length: 1256} {RNA1310_22041} {RNA815_26444}
9. MligTC455_40551 1174 24.45 Mlig455_067429

Neo: -

Age: -

Region-enriched R8: 1.619/0.01920
Region-enriched R2: 1.477/0.02353

Regeneration-downregulated BL: -2.164

Regeneration-depleted BL: -2.164

 0.97 - - - - - 0.970 Mlig455_067429 {REF} {Length: 919} {RNA1509_20891} {RNA1310_40329} {RNA815_19163}
10. MligTC455_26939 72 1.49 Mlig455_033291

Neo: -

Age: -

 0.969 - - - 0.969 - - Mlig455_033291 {REF} {Length: 6212} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.0]} {Smed: dd_Smed_v6_16441_0_1, dd_Smed_v6_16441_0_1, [Score=71.6, Expect=4e-13]} {RNA1509_16377} {RNA1310_5710.1} {RNA815_6291.1}
11. MligTC455_37563 45 0.94 Mlig455_025592, Mlig455_057216, Mlig455_060662

Neo: -

Age: Up-Down-Up

 GALR2, OPN4, TRHR 0.968 - - - - - 0.968

Mlig455_025592 {REF} {Length: 4246} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=86.7]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=77.2]} {Human: ENSG00000182687, GALR2, galanin receptor 2, [Score=58.5, Expect=8e-09]; ENSG00000174417, TRHR, thyrotropin releasing hormone receptor, [Score=57.8, Expect=1e-08]} {Mouse: ENSMUSG00000026237, Nmur1, neuromedin U receptor 1, [Score=57.8, Expect=9e-09]; ENSMUSG00000020793, Galr2, galanin receptor 2, [Score=55.8, Expect=3e-08]} {Dmel: FBgn0038874, ETHR, [Score=86.7, Expect=3e-18]} {Celegans: WBGene00020586, frpr-18, FLP-2 receptor; FMRFamide Peptide Receptor family, [Score=93.6, Expect=1e-20]} {Smed: dd_Smed_v6_16149_0_1, dd_Smed_v6_16149_0_1, [RH, Score=164, Expect=2e-47]} {RNA1509_10419} {RNA1310_74041} {RNA815_44148}

Mlig455_057216 {REF} {Length: 2773} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=87.0]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=77.5]} {Human: ENSG00000174417, TRHR, thyrotropin releasing hormone receptor, [Score=57.0, Expect=2e-08]; ENSG00000182687, GALR2, galanin receptor 2, [Score=55.5, Expect=6e-08]} {Mouse: ENSMUSG00000026237, Nmur1, neuromedin U receptor 1, [Score=57.8, Expect=7e-09]} {Dmel: FBgn0038874, ETHR, [Score=86.3, Expect=3e-18]} {Celegans: WBGene00020586, frpr-18, FLP-2 receptor; FMRFamide Peptide Receptor family, [Score=92.0, Expect=2e-20]} {Smed: dd_Smed_v6_16149_0_1, dd_Smed_v6_16149_0_1, [RH, Score=162, Expect=7e-47]} {RNA1509_50426} {RNA1310_74041} {RNA815_44148}

Mlig455_060662 {REF} {Length: 1185} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=76.7]; Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=67.1]} {Human: ENSG00000122375, OPN4, opsin 4, [Score=50.4, Expect=3e-06]; ENSG00000174417, TRHR, thyrotropin releasing hormone receptor, [Score=48.9, Expect=7e-06]} {Dmel: FBgn0029723, Proc-R, Proctolin receptor, [Score=73.9, Expect=4e-14]} {Celegans: WBGene00020586, frpr-18, FLP-2 receptor; FMRFamide Peptide Receptor family, [Score=77.0, Expect=3e-15]} {Smed: dd_Smed_v6_16149_0_1, dd_Smed_v6_16149_0_1, [Score=144, Expect=6e-40]} {RNA1310_74041} {RNA815_42171}
12. MligTC455_47226 202 4.22 Mlig455_012306

Neo: -

Age: -

Region-enriched R4: 2.582/0.02845

 0.968 - - - - - 0.968 Mlig455_012306 {REF} {Length: 1104} {Celegans: WBGene00021577, Y46B2A.2, [Score=45.4, Expect=8e-07]} {Smed: dd_Smed_v6_49255_0_1, dd_Smed_v6_49255_0_1, [Score=44.3, Expect=3e-07]} {RNA1509_48023} {RNA1310_18058} {RNA815_356.1}
13. MligTC455_48010 177 3.69 Mlig455_051923

Neo: -

Age: logFC(26M/2M)=-0.400

 0.957 - - - - - 0.957 Mlig455_051923 {REF} {Length: 1181} {Smed: dd_Smed_v6_2217_0_1, dd_Smed_v6_2217_0_1, [RH, Score=54.7, Expect=4e-10]} {RNA1509_30673} {RNA1310_38150} {RNA815_20383}
14. MligTC455_32383 630 13.12 Mlig455_001890, Mlig455_045019, Mlig455_069717

Neo: -

Age: logFC(26M/2M)=0.809

 0.956 - - - 0.956 - -

Mlig455_001890 {REF} {Length: 5219} {Pfam: DBF zinc finger [PF07535.14, score=54.5]} {RNA1509_7608} {RNA1310_3625} {RNA815_395.1}

Mlig455_045019 {REF} {Length: 5389} {Pfam: DBF zinc finger [PF07535.14, score=49.7]} {RNA1509_7608} {RNA1310_3625} {RNA815_395.1}

Mlig455_069717 {REF} {Length: 4985} {Pfam: DBF zinc finger [PF07535.14, score=54.6]} {RNA1509_7608} {RNA1310_3625} {RNA815_395.1}
15. MligTC455_21033 1129 23.52 Mlig455_010672

Neo: -

Age: logFC(26M/2M)=0.356

Region-specific R2: 3.326

Region-enriched R2: 2.739/0.00000

Regeneration-downregulated R2: -1.967

Regeneration-depleted R2: -1.967

 0.954 - - - - - 0.954 Mlig455_010672 {REF} {Length: 829} {RNA1509_30331, RNA1509_45731} {RNA1310_60944, RNA1509_30331, RNA1509_45731} {RNA1509_30331, RNA1509_45731, RNA815_27381.1}
16. MligTC455_21665 1283 26.74 Mlig455_000443, Mlig455_000504

Neo: -

Age: logFC(26M/2M)=-0.231

Region-specific R2: 3.326

Region-enriched R2: 2.174/0.00141

 PPP3R1 0.953 - - - - - 0.953

Mlig455_000443 {REF} {Length: 1489} {Pfam: EF hand [PF00036.34, score=92.6]; EF-hand domain pair [PF13499.8, score=86.6]; EF-hand domain [PF13405.8, score=74.3]; EF hand [PF13202.8, score=72.6]; EF-hand domain pair [PF13833.8, score=65.7]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=30.2]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=27.0]; EF-hand domain [PF14658.8, score=21.7]} {Human: ENSG00000221823, PPP3R1, protein phosphatase 3 regulatory subunit B, alpha, [RH, Score=289, Expect=5e-101]} {Mouse: ENSMUSG00000033953, Ppp3r1, protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I), [RH, Score=289, Expect=3e-101]} {Dmel: FBgn0010014, CanB, Calcineurin B, [RH, Score=282, Expect=1e-98]} {Celegans: WBGene00000554, cnb-1, Protein phosphatase 2B regulatory subunit cnb-1, [RH, Score=272, Expect=7e-95]} {Smed: dd_Smed_v6_5589_0_1, dd_Smed_v6_5589_0_1, [RH, Score=281, Expect=1e-98]} {RNA1509_14613, RNA1509_39549} {RNA1310_16848.2, RNA1509_14613, RNA1509_39549} {RNA1509_14613, RNA1509_39549, RNA815_6272}

Mlig455_000504 {REF} {Length: 1689} {Pfam: EF hand [PF00036.34, score=90.0]; EF-hand domain pair [PF13499.8, score=84.5]; EF-hand domain [PF13405.8, score=71.9]; EF hand [PF13202.8, score=69.8]; EF-hand domain pair [PF13833.8, score=63.4]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=28.7]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=25.4]; EF-hand domain [PF14658.8, score=19.6]} {Human: ENSG00000221823, PPP3R1, protein phosphatase 3 regulatory subunit B, alpha, [RH, Score=290, Expect=2e-100]} {Mouse: ENSMUSG00000033953, Ppp3r1, protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I), [RH, Score=290, Expect=1e-100]} {Dmel: FBgn0010014, CanB, Calcineurin B, [RH, Score=283, Expect=4e-98]} {Celegans: WBGene00000554, cnb-1, Protein phosphatase 2B regulatory subunit cnb-1, [RH, Score=274, Expect=3e-94]} {Smed: dd_Smed_v6_5589_0_1, dd_Smed_v6_5589_0_1, [RH, Score=283, Expect=3e-98]} {RNA1509_39549} {RNA1310_16848.2} {RNA815_6272}
17. MligTC455_34258 536 11.17 Mlig455_039100

Neo: -

Age: Up-Down-Down

 UNC80 0.953 - - - - - 0.953 Mlig455_039100 {REF} {Length: 6695} {Pfam: Protein UNC80 [PF19424.1, score=644.7]} {Human: ENSG00000144406, UNC80, unc-80 homolog, NALCN channel complex subunit, [Score=622, Expect=0.0]} {Mouse: ENSMUSG00000055567, Unc80, unc-80, NALCN activator, [Score=619, Expect=0.0]} {Dmel: FBgn0039536, unc80, uncoordinated 80, [Score=642, Expect=0.0]} {Celegans: WBGene00006812, unc-80, [Score=620, Expect=0.0]} {Smed: dd_Smed_v6_5118_0_1, dd_Smed_v6_5118_0_1, [Score=854, Expect=0.0]} {RNA1509_23382} {RNA1310_463.1} {RNA815_194.1}
18. MligTC455_26986 157 3.28 Mlig455_058044

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.496

 0.952 - - - 0.952 - - Mlig455_058044 {REF} {Length: 3183} {TRANSSPLICED} {Pfam: Diacylglycerol kinase catalytic domain [PF00781.26, score=51.3]; Ceramide kinase C-terminal domain [PF19280.1, score=22.6]} {Mouse: ENSMUSG00000075256, Cerkl, ceramide kinase-like, [Score=55.1, Expect=2e-07]} {Dmel: FBgn0037315, Cerk, Ceramide kinase, [Score=52.4, Expect=1e-06]} {RNA1509_33630, RNA1509_39108} {RNA1310_4577, RNA1509_33630, RNA1509_39108} {RNA1509_33630, RNA1509_39108, RNA815_1173}
19. MligTC455_40441 36 0.75 Mlig455_043401

Neo: -

Age: -

 0.952 - - - 0.952 - - Mlig455_043401 {REF} {Length: 470} {NoTransDecoderORF} {RNA1509_33654} {RNA1310_22830.1} {RNA815_26998}
20. MligTC455_42053 93 1.93 Mlig455_027261

Neo: -

Age: Down-Up-Down

 0.952 - - - 0.952 - - Mlig455_027261 {REF} {Length: 1018} {NoTransDecoderORF} {RNA1509_32735} {RNA1310_29165.1} {RNA815_31830}
21. MligTC455_50685 443 9.22 Mlig455_008930

Neo: -

Age: Up-Down-Down

 LRRK2 0.952 - - - 0.952 - - Mlig455_008930 {REF} {Length: 12042} {TRANSSPLICED} {Pfam: C-terminal of Roc, COR, domain [PF16095.7, score=151.5]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=75.1]; TIR domain [PF13676.8, score=67.0]; Ras family [PF00071.24, score=44.4]; Leucine rich repeat [PF13855.8, score=39.4]; Leucine Rich repeats (2 copies) [PF12799.9, score=24.7]} {Human: ENSG00000188906, LRRK2, leucine rich repeat kinase 2, [Score=158, Expect=1e-37]} {Mouse: ENSMUSG00000036273, Lrrk2, leucine-rich repeat kinase 2, [Score=161, Expect=9e-39]} {Dmel: FBgn0038816, Lrrk, Leucine-rich repeat kinase, [Score=146, Expect=3e-34]} {Celegans: WBGene00003068, lrk-1, Leucine-rich repeat serine/threonine-protein kinase 1, [Score=122, Expect=5e-27]} {Smed: dd_Smed_v6_12105_0_1, dd_Smed_v6_12105_0_1, [Score=714, Expect=0.0]} {RNA1509_2407, RNA1509_24338, RNA1509_49350} {RNA1310_77.1, RNA1509_2407, RNA1509_24338, RNA1509_49350} {RNA1509_2407, RNA1509_24338, RNA1509_49350, RNA815_489}
22. MligTC455_12793 154 3.2 Mlig455_035462

Neo: -

Age: -

Region-enriched R2: 3.292/0.00953

 CSNK1D 0.951 - - - 0.951 - - Mlig455_035462 {REF} {Length: 2870} {Pfam: Protein kinase domain [PF00069.27, score=97.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=58.1]; Fungal protein kinase [PF17667.3, score=29.9]; Phosphotransferase enzyme family [PF01636.25, score=21.1]} {Human: ENSG00000141551, CSNK1D, casein kinase 1 delta, [RH, Score=578, Expect=0.0]; ENSG00000283900, TPTEP2-CSNK1E, TPTEP2-CSNK1E readthrough, [RH, Score=573, Expect=0.0]; ENSG00000213923, CSNK1E, casein kinase 1 epsilon, [RH, Score=573, Expect=0.0]} {Mouse: ENSMUSG00000025162, Csnk1d, casein kinase 1, delta, [RH, Score=578, Expect=0.0]; ENSMUSG00000022433, Csnk1e, casein kinase 1, epsilon, [RH, Score=574, Expect=0.0]} {Dmel: FBgn0002413, dco, discs overgrown, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00002203, kin-20, Casein kinase I isoform delta, [RH, Score=499, Expect=1e-176]} {Smed: dd_Smed_v6_4561_0_1, dd_Smed_v6_4561_0_1, [RH, Score=577, Expect=0.0]} {RNA1509_19984} {RNA1310_23975} {RNA815_12595}
23. MligTC455_22411 240 4.99 Mlig455_027900

Neo: -

Age: -

 0.951 - - - - - 0.951 Mlig455_027900 {REF} {Length: 3133} {RNA1509_30929, RNA1509_38512} {RNA1310_27672, RNA1509_30929, RNA1509_38512} {RNA1509_30929, RNA1509_38512, RNA815_26534}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA