TomoSeq data search

Data search

Results for MligTC455_28469

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28469

22

0.45

Mlig455_014256

Neo: -

Age: -

Mlig455_014256 {REF} {Length: 5298} {Dmel: FBgn0030052, CG12065, [Score=124, Expect=8e-29]} {Celegans: WBGene00019199, H14E04.2, [Score=102, Expect=2e-22]} {Smed: dd_Smed_v6_2100_0_2, dd_Smed_v6_2100_0_2, [Score=150, Expect=1e-37]} {RNA1509_30308} {RNA1310_3001, RNA1509_30308} {RNA1509_30308, RNA815_45999}

Cumulative graph for MligTC455_28469

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.232	0.916	0.99961	1.00000
RegionR2	0.132	0.916	0.99973	1.00000
RegionR3	3.749	0.916	0.01021	0.15549
RegionR4	0.307	0.916	0.55614	0.87613
RegionR5	1.148	0.916	0.32436	0.66708
RegionR6	1.933	0.916	0.21747	0.79649
RegionR7	-1.263	0.916	0.99980	1.00000
RegionR8	-1.774	0.916	0.99979	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.215	0.916	0.99997	1.00000
RegenerationR2	2.584	0.916	0.08604	0.47188
RegenerationR3	0.996	0.916	0.35288	0.77268
RegenerationR4	2.73	0.916	0.08952	0.46902
RegenerationR5	2.125	0.916	0.08787	0.45699
RegenerationR6	1.544	0.916	0.31017	0.65831
RegenerationBL	-0.135	0.916	0.99986	1.00000
RegenerationTP	0.98	0.916	0.99997	1.00000

Genes with expression patterns similar to MligTC455_28469

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28469	22	0.45	Mlig455_014256	Neo: - Age: -		3	-	1.000	-	-	1.000	1.000	Mlig455_014256 {REF} {Length: 5298} {Dmel: FBgn0030052, CG12065, [Score=124, Expect=8e-29]} {Celegans: WBGene00019199, H14E04.2, [Score=102, Expect=2e-22]} {Smed: dd_Smed_v6_2100_0_2, dd_Smed_v6_2100_0_2, [Score=150, Expect=1e-37]} {RNA1509_30308} {RNA1310_3001, RNA1509_30308} {RNA1509_30308, RNA815_45999}
2.	MligTC455_37453	58	1.21	Mlig455_061545	Neo: - Age: -		0.973	-	-	-	-	0.973	-	Mlig455_061545 {REF} {Length: 4478} {RNA1509_50803} {RNA1310_4798.1} {RNA815_2540.1}
3.	MligTC455_06183	27	0.55	Mlig455_039162	Neo: - Age: -		0.97	-	-	-	-	0.970	-	Mlig455_039162 {REF} {Length: 389} {NoTransDecoderORF}
4.	MligTC455_34834	126	2.62	Mlig455_036550, Mlig455_057800, Mlig455_057817	Neo: Int S/G2/M Age: -		0.969	-	-	-	-	0.969	-	Mlig455_036550 {REF} {Length: 2962} {RNA1509_42812} {RNA1310_32131} {RNA815_46120} Mlig455_057800 {REF} {Length: 3033} {RNA1509_42812} {RNA1310_32131} {RNA815_46120} Mlig455_057817 {REF} {Length: 2955} {RNA1509_42812} {RNA1310_32131} {RNA815_46120}
5.	MligTC455_45902	16	0.33	Mlig455_065158	Neo: - Age: -		0.968	-	-	-	-	0.968	-	Mlig455_065158 {REF} {Length: 1544} {Pfam: Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=26.9]} {RNA1310_16870} {RNA815_15768}
6.	MligTC455_50550	79	1.65	Mlig455_012759	Neo: - Age: -	MAP3K7	0.967	-	-	-	-	0.967	-	Mlig455_012759 {REF} {Length: 2310} {Pfam: Protein kinase domain [PF00069.27, score=97.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=55.3]} {Human: ENSG00000135341, MAP3K7, mitogen-activated protein kinase kinase kinase 7, [Score=79.7, Expect=3e-15]} {Mouse: ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=79.7, Expect=2e-15]} {Dmel: FBgn0267698, Pak, p21-activated kinase, [Score=72.0, Expect=7e-13]} {Celegans: WBGene00003396, mom-4, Mitogen-activated protein kinase kinase kinase mom-4, [Score=77.4, Expect=6e-15]} {Smed: dd_Smed_v6_6769_0_1, dd_Smed_v6_6769_0_1, [Score=77.8, Expect=5e-15]} {RNA1509_52288} {RNA1310_14858.1} {RNA815_34629}
7.	MligTC455_17304	101	2.1	Mlig455_031437	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-2.250 Region-enriched R3: 3.738/0.00900		0.964	-	-	-	-	0.964	-	Mlig455_031437 {REF} {Length: 1340} {NoTransDecoderORF} {RNA1509_15660} {RNA1310_6657.1} {RNA815_2791.1}
8.	MligTC455_16631	31	0.65	Mlig455_023850	Neo: - Age: Down-Down-Up		0.956	-	-	-	-	-	0.956	Mlig455_023850 {REF} {Length: 1728} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=36.1]} {RNA1310_24638} {RNA815_9247}
9.	MligTC455_47400	16	0.32	Mlig455_010178	Neo: - Age: -		0.955	-	-	-	-	0.955	-	Mlig455_010178 {REF} {Length: 955} {NoTransDecoderORF} {RNA1310_92616}
10.	MligTC455_17652	18	0.37	Mlig455_050566	Neo: - Age: - Region-enriched R8: 5.704/0.00683 Region-enriched R7: 4.641/0.00647 Region-enriched R2: 3.617/0.01372		0.954	-	-	-	-	0.954	-	Mlig455_050566 {REF} {Length: 646} {NoTransDecoderORF} {RNA1310_71944}
11.	MligTC455_45761	2	0.04	Mlig455_069954	Neo: - Age: -		0.953	-	-	-	-	0.953	-	Mlig455_069954 {REF} {Length: 1707} {NoTransDecoderORF} {RNA1310_147977} {RNA815_46078}
12.	MligTC455_38616	55	1.15	Mlig455_043530	Neo: - Age: Up-Down-Down	SLC6A5	0.952	-	-	-	-	0.952	-	Mlig455_043530 {REF} {Length: 3918} {Pfam: Sodium:neurotransmitter symporter family [PF00209.20, score=690.2]} {Human: ENSG00000165970, SLC6A5, solute carrier family 6 member 5, [RH, Score=583, Expect=0.0]; ENSG00000196517, SLC6A9, solute carrier family 6 member 9, [RH, Score=563, Expect=0.0]; ENSG00000011083, SLC6A7, solute carrier family 6 member 7, [RH, Score=554, Expect=0.0]} {Mouse: ENSMUSG00000028542, Slc6a9, solute carrier family 6 (neurotransmitter transporter, glycine), member 9, [RH, Score=558, Expect=0.0]; ENSMUSG00000052026, Slc6a7, solute carrier family 6 (neurotransmitter transporter, L-proline), member 7, [RH, Score=555, Expect=0.0]} {Dmel: FBgn0034911, CG5549, [RH, Score=549, Expect=0.0]} {Celegans: WBGene00004910, snf-11, Transporter, [Score=465, Expect=1e-156]} {Smed: dd_Smed_v6_3642_0_2, dd_Smed_v6_3642_0_2, [Score=525, Expect=4e-180]} {RNA1509_17343} {RNA1310_77174, RNA1509_17343} {RNA1509_17343, RNA815_36520}

Berezikov Lab - 2020-2021 © ERIBA