M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28519

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28519 2242 46.70 Mlig455_026337

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.226

Region-enriched R4: 1.066/0.01237

 SEM1 Mlig455_026337 {REF} {Length: 1030} {TRANSSPLICED} {Pfam: DSS1/SEM1 family [PF05160.15, score=78.7]} {Human: ENSG00000127922, SEM1, SEM1, 26S proteasome complex subunit, [RH, Score=58.5, Expect=3e-12]} {Mouse: ENSMUSG00000042541, Sem1, SEM1, 26S proteasome complex subunit, [RH, Score=58.5, Expect=2e-12]} {Dmel: FBgn0266666, Sem1, Suppressor of exocyst mutations 1, [Score=48.9, Expect=1e-08]} {Celegans: WBGene00022492, dss-1, Probable 26S proteasome complex subunit dss-1, [Score=49.3, Expect=8e-09]} {Smed: dd_Smed_v6_1550_0_1, dd_Smed_v6_1550_0_1, [Score=69.7, Expect=7e-17]} {RNA1509_29008, RNA1509_48638, RNA1509_5698} {RNA1310_33997.1, RNA1509_29008, RNA1509_48638, RNA1509_5698} {RNA1509_29008, RNA1509_48638, RNA1509_5698, RNA815_15780.1}

Cumulative graph for MligTC455_28519

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.734 5.81 0.01998 0.39084
RegionR2 0.231 5.81 0.53394 0.90453
RegionR3 0.541 5.81 0.07094 0.47120
RegionR4 1.066 5.81 0.00125 0.01237
RegionR5 0.801 5.81 0.00329 0.02526
RegionR6 0.525 5.81 0.07899 0.51971
RegionR7 -0.141 5.81 0.68145 1.00000
RegionR8 -1.289 5.81 0.00411 0.11222

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.825 5.81 0.53591 1.00000
RegenerationR2 -0.175 5.81 0.61392 0.92069
RegenerationR3 -0.012 5.81 0.97431 1.00000
RegenerationR4 -0.178 5.81 0.63142 0.92378
RegenerationR5 -0.068 5.81 0.84304 1.00000
RegenerationR6 0.633 5.81 0.07665 0.34606
RegenerationBL 1.036 5.81 0.00373 0.05398
RegenerationTP 0.439 5.81 0.31510 0.75993


Genes with expression patterns similar to MligTC455_28519

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28519 2242 46.7 Mlig455_026337

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.226

Region-enriched R4: 1.066/0.01237

 SEM1 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_026337 {REF} {Length: 1030} {TRANSSPLICED} {Pfam: DSS1/SEM1 family [PF05160.15, score=78.7]} {Human: ENSG00000127922, SEM1, SEM1, 26S proteasome complex subunit, [RH, Score=58.5, Expect=3e-12]} {Mouse: ENSMUSG00000042541, Sem1, SEM1, 26S proteasome complex subunit, [RH, Score=58.5, Expect=2e-12]} {Dmel: FBgn0266666, Sem1, Suppressor of exocyst mutations 1, [Score=48.9, Expect=1e-08]} {Celegans: WBGene00022492, dss-1, Probable 26S proteasome complex subunit dss-1, [Score=49.3, Expect=8e-09]} {Smed: dd_Smed_v6_1550_0_1, dd_Smed_v6_1550_0_1, [Score=69.7, Expect=7e-17]} {RNA1509_29008, RNA1509_48638, RNA1509_5698} {RNA1310_33997.1, RNA1509_29008, RNA1509_48638, RNA1509_5698} {RNA1509_29008, RNA1509_48638, RNA1509_5698, RNA815_15780.1}
2. MligTC455_28520 2013 41.93 Mlig455_052699

Neo: Neoblast

Age: Down-Down-Up

Region-enriched R4: 1.382/0.00004

 SEM1 5.69 0.946 0.950 0.968 0.992 0.896 0.938 Mlig455_052699 {REF} {Length: 1402} {Pfam: DSS1/SEM1 family [PF05160.15, score=78.0]} {Human: ENSG00000127922, SEM1, SEM1, 26S proteasome complex subunit, [RH, Score=60.1, Expect=2e-12]} {Mouse: ENSMUSG00000042541, Sem1, SEM1, 26S proteasome complex subunit, [RH, Score=60.1, Expect=1e-12]} {Dmel: FBgn0266666, Sem1, Suppressor of exocyst mutations 1, [RH, Score=50.1, Expect=9e-09]} {Celegans: WBGene00022492, dss-1, Probable 26S proteasome complex subunit dss-1, [Score=48.9, Expect=2e-08]} {Smed: dd_Smed_v6_1550_0_1, dd_Smed_v6_1550_0_1, [RH, Score=72.4, Expect=1e-17]} {RNA1509_14991, RNA1509_48638} {RNA1310_33997.1, RNA1509_14991} {RNA1509_14991, RNA815_15780.3}
3. MligTC455_27955 539 11.23 Mlig455_050133

Neo: -

Age: -

Regeneration-enriched BL: 2.316
Regeneration-enriched R6: 1.860

 KLHDC8B 2.584 - - - 0.955 0.797 0.832 Mlig455_050133 {REF} {Length: 2014} {TRANSSPLICED} {Pfam: Kelch motif [PF01344.27, score=121.0]; Kelch motif [PF13964.8, score=114.7]; Galactose oxidase, central domain [PF13418.8, score=80.3]; Galactose oxidase, central domain [PF13415.8, score=76.8]; Kelch motif [PF07646.17, score=50.6]; Kelch motif [PF13854.8, score=41.2]; Protein of unknown function (DUF1668) [PF07893.15, score=28.3]} {Human: ENSG00000185909, KLHDC8B, kelch domain containing 8B, [RH, Score=162, Expect=4e-46]} {Mouse: ENSMUSG00000032609, Klhdc8b, kelch domain containing 8B, [RH, Score=162, Expect=2e-46]} {Dmel: FBgn0040230, dbo, diablo, [Score=67.4, Expect=6e-12]} {Celegans: WBGene00008269, C53A5.11, [Score=57.8, Expect=4e-09]} {Smed: dd_Smed_v6_2508_0_1, dd_Smed_v6_2508_0_1, [RH, Score=160, Expect=3e-46]} {RNA1509_20477} {RNA1310_11616, RNA1509_20477} {RNA1509_20477, RNA815_11073}
4. MligTC455_36057 405 8.44 Mlig455_066283

Neo: -

Age: Down-Up-Down

 2.485 - - - 0.780 0.752 0.953 Mlig455_066283 {REF} {Length: 1120} {TRANSSPLICED} {RNA1509_15187} {RNA1310_27076.1} {RNA815_21426}
5. MligTC455_21662 908 18.92 Mlig455_000688

Neo: -

Age: Down-Up-Down

Region-enriched R5: 1.561/0.00000

 UBE2Q2 2.473 - - 0.732 0.956 - 0.785 Mlig455_000688 {REF} {Length: 3214} {TRANSSPLICED} {Pfam: Ubiquitin-conjugating enzyme [PF00179.28, score=36.5]} {Human: ENSG00000140367, UBE2Q2, ubiquitin conjugating enzyme E2 Q2, [Score=191, Expect=2e-57]} {Mouse: ENSMUSG00000032307, Ube2q2, ubiquitin-conjugating enzyme E2Q family member 2, [Score=188, Expect=3e-56]; ENSMUSG00000042572, Ube2q1, ubiquitin-conjugating enzyme E2Q family member 1, [Score=182, Expect=3e-55]} {Dmel: FBgn0023528, CG2924, [Score=191, Expect=4e-57]} {Celegans: WBGene00006720, ubc-25, Ubiquitin-conjugating enzyme E2 25, [Score=187, Expect=5e-56]} {RNA1509_59164} {RNA1310_38323} {RNA815_9330.1}
6. MligTC455_21663 909 18.94 Mlig455_000744

Neo: Irradiation

Age: -

Region-enriched R5: 1.560/0.00000

 2.471 - - 0.728 0.957 - 0.786 Mlig455_000744 {REF} {Length: 1619} {NoTransDecoderORF} {RNA1509_24253, RNA1509_25694, RNA1509_56674} {RNA1310_38323, RNA1509_24253, RNA1509_25694, RNA1509_56674} {RNA1509_24253, RNA1509_25694, RNA1509_56674, RNA815_9330.1}
7. MligTC455_43844 6305 131.36 Mlig455_054801, Mlig455_054895

Neo: Neoblast

Age: -

 PSMD14 2.463 - - - 0.955 0.784 0.724

Mlig455_054801 {REF} {Length: 2038} {TRANSSPLICED} {Pfam: JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=112.1]; Maintenance of mitochondrial structure and function [PF13012.8, score=54.5]; Prokaryotic homologs of the JAB domain [PF14464.8, score=25.7]} {Human: ENSG00000115233, PSMD14, proteasome 26S subunit, non-ATPase 14, [RH, Score=513, Expect=0.0]} {Mouse: ENSMUSG00000026914, Psmd14, proteasome (prosome, macropain) 26S subunit, non-ATPase, 14, [RH, Score=513, Expect=0.0]} {Dmel: FBgn0028694, Rpn11, Regulatory particle non-ATPase 11, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00004467, rpn-11, 26S proteasome non-ATPase regulatory subunit 14, [RH, Score=453, Expect=7e-162]} {Smed: dd_Smed_v6_2126_0_1, dd_Smed_v6_2126_0_1, [RH, Score=521, Expect=0.0]} {RNA1509_2523, RNA1509_6626} {RNA1310_22197.1, RNA1509_2523, RNA1509_6626} {RNA1509_2523, RNA1509_6626, RNA815_10026}

Mlig455_054895 {REF} {Length: 2461} {TRANSSPLICED} {Pfam: JAB1/Mov34/MPN/PAD-1 ubiquitin protease [PF01398.23, score=112.1]; Maintenance of mitochondrial structure and function [PF13012.8, score=54.5]; Prokaryotic homologs of the JAB domain [PF14464.8, score=25.7]} {Human: ENSG00000115233, PSMD14, proteasome 26S subunit, non-ATPase 14, [RH, Score=513, Expect=0.0]} {Mouse: ENSMUSG00000026914, Psmd14, proteasome (prosome, macropain) 26S subunit, non-ATPase, 14, [RH, Score=513, Expect=0.0]} {Dmel: FBgn0028694, Rpn11, Regulatory particle non-ATPase 11, [RH, Score=529, Expect=0.0]} {Celegans: WBGene00004467, rpn-11, 26S proteasome non-ATPase regulatory subunit 14, [RH, Score=454, Expect=6e-162]} {Smed: dd_Smed_v6_2126_0_1, dd_Smed_v6_2126_0_1, [RH, Score=520, Expect=0.0]} {RNA1509_2523} {RNA1310_22197.1} {RNA815_10026}
8. MligTC455_39285 503 10.48 Mlig455_026954

Neo: Int S/G2/M

Age: Down-Up-Up

Region-enriched R5: 2.273/0.00002

 1.733 - - - 0.957 - 0.776 Mlig455_026954 {REF} {Length: 2234} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_25432} {RNA1310_22232} {RNA815_10193}
9. MligTC455_40975 6522 135.87 Mlig455_066896

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.212

Regeneration-upregulated BL: 1.548

Regeneration-enriched BL: 1.548

 HNRNPA2B1 1.731 - - - 0.951 0.780 - Mlig455_066896 {REF} {Length: 2427} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=122.9]; RNA recognition motif [PF16367.7, score=43.7]} {Human: ENSG00000122566, HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, [Score=202, Expect=6e-62]; ENSG00000135486, HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, [Score=194, Expect=2e-59]} {Mouse: ENSMUSG00000004980, Hnrnpa2b1, heterogeneous nuclear ribonucleoprotein A2/B1, [Score=202, Expect=9e-63]} {Dmel: FBgn0004903, Rb97D, Ribonuclear protein at 97D, [Score=196, Expect=1e-58]} {Celegans: WBGene00001999, hrp-1, Heterogeneous nuclear ribonucleoprotein A1, [Score=199, Expect=5e-61]} {Smed: dd_Smed_v6_1194_0_1, dd_Smed_v6_1194_0_1, [Score=243, Expect=3e-79]} {RNA1509_1015, RNA1509_16014, RNA1509_21295, RNA1509_21450, RNA1509_31479, RNA1509_34473, RNA1509_34686} {RNA1310_6454, RNA1509_1015, RNA1509_16014, RNA1509_21295, RNA1509_21450, RNA1509_31479, RNA1509_34473, RNA1509_34686} {RNA1509_1015, RNA1509_16014, RNA1509_21295, RNA1509_21450, RNA1509_31479, RNA1509_34473, RNA1509_34686, RNA815_8384.1}
10. MligTC455_35133 712 14.83 Mlig455_046669

Neo: Neoblast, stringent

Age: logFC(26M/2M)=0.296

Region-enriched R4: 1.168/0.02441
Region-enriched R5: 1.159/0.00112

 TOP1 1.716 - - - 0.958 - 0.758 Mlig455_046669 {REF} {Length: 3931} {TRANSSPLICED} {Pfam: Eukaryotic DNA topoisomerase I, catalytic core [PF01028.22, score=326.0]; Eukaryotic DNA topoisomerase I, DNA binding fragment [PF02919.17, score=269.1]; C-terminal topoisomerase domain [PF14370.8, score=48.5]} {Human: ENSG00000198900, TOP1, DNA topoisomerase I, [Score=675, Expect=0.0]; ENSG00000184428, TOP1MT, DNA topoisomerase I mitochondrial, [Score=652, Expect=0.0]} {Mouse: ENSMUSG00000070544, Top1, topoisomerase (DNA) I, [Score=675, Expect=0.0]} {Dmel: FBgn0004924, Top1, Topoisomerase 1, [Score=636, Expect=0.0]} {Celegans: WBGene00006595, top-1, DNA topoisomerase 1, [Score=595, Expect=0.0]} {Smed: dd_Smed_v6_2421_0_2, dd_Smed_v6_2421_0_2, [Score=610, Expect=0.0]} {RNA1509_23037, RNA1509_3610, RNA1509_43713} {RNA1310_7908.1, RNA1509_23037, RNA1509_3610, RNA1509_43713} {RNA1509_23037, RNA1509_3610, RNA1509_43713, RNA815_2481.2}
11. MligTC455_52610 2169 45.19 Mlig455_008639

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.168

Region-enriched R5: 1.020/0.00000

 PA2G4 1.704 0.738 - - 0.966 - - Mlig455_008639 {REF} {Length: 3279} {Pfam: Metallopeptidase family M24 [PF00557.26, score=72.2]} {Human: ENSG00000170515, PA2G4, proliferation-associated 2G4, [RH, Score=416, Expect=3e-144]} {Mouse: ENSMUSG00000025364, Pa2g4, proliferation-associated 2G4, [RH, Score=420, Expect=7e-146]} {Dmel: FBgn0035630, CG10576, [RH, Score=385, Expect=3e-132]} {Celegans: WBGene00021088, W08E12.7, [RH, Score=345, Expect=4e-117]} {Smed: dd_Smed_v6_2102_0_1, dd_Smed_v6_2102_0_1, [RH, Score=355, Expect=4e-121]} {RNA1509_21937} {RNA1310_16489.1} {RNA815_7518}
12. MligTC455_52611 2214 46.12 Mlig455_069407

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.448

Region-enriched R5: 1.005/0.00000

 PA2G4 1.703 0.746 - - 0.957 - - Mlig455_069407 {REF} {Length: 3169} {Pfam: Metallopeptidase family M24 [PF00557.26, score=72.2]} {Human: ENSG00000170515, PA2G4, proliferation-associated 2G4, [RH, Score=416, Expect=3e-144]} {Mouse: ENSMUSG00000025364, Pa2g4, proliferation-associated 2G4, [RH, Score=420, Expect=7e-146]} {Dmel: FBgn0035630, CG10576, [RH, Score=385, Expect=3e-132]} {Celegans: WBGene00021088, W08E12.7, [RH, Score=345, Expect=4e-117]} {Smed: dd_Smed_v6_2102_0_1, dd_Smed_v6_2102_0_1, [RH, Score=355, Expect=4e-121]} {RNA1509_21937} {RNA1310_16489.1, RNA1509_21937} {RNA1509_21937, RNA815_7518}
13. MligTC455_35115 2916 60.74 Mlig455_030023

Neo: Neoblast, stringent

Age: -

Regeneration-enriched BL: 1.662
Regeneration-enriched R6: 1.336

 SRSF4 1.686 - - - 0.952 0.734 - Mlig455_030023 {REF} {Length: 1979} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=96.2]; RNA binding motif [PF08777.13, score=23.8]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=22.0]; Occluded RNA-recognition motif [PF16842.7, score=21.7]} {Human: ENSG00000116350, SRSF4, serine and arginine rich splicing factor 4, [Score=188, Expect=5e-55]} {Mouse: ENSMUSG00000028911, Srsf4, serine/arginine-rich splicing factor 4, [Score=192, Expect=7e-57]} {Dmel: FBgn0004587, B52, [Score=169, Expect=1e-49]} {Celegans: WBGene00004699, rsp-2, Probable splicing factor, arginine/serine-rich 2, [Score=147, Expect=5e-42]} {Smed: dd_Smed_v6_3431_0_1, dd_Smed_v6_3431_0_1, [Score=179, Expect=7e-54]} {RNA1509_14681, RNA1509_17333, RNA1509_20856, RNA1509_23276, RNA1509_38639, RNA1509_52070, RNA1509_55703} {RNA1310_10967, RNA1509_14681, RNA1509_17333, RNA1509_20856, RNA1509_23276, RNA1509_38639, RNA1509_52070, RNA1509_55703} {RNA1509_14681, RNA1509_17333, RNA1509_20856, RNA1509_23276, RNA1509_38639, RNA1509_52070, RNA1509_55703, RNA815_8646}
14. MligTC455_50476 452 9.42 Mlig455_022335

Neo: -

Age: -

Region-enriched R4: 1.510/0.04903

 RNF25 1.686 - - - 0.734 0.952 - Mlig455_022335 {REF} {Length: 3061} {TRANSSPLICED} {Pfam: RWD domain [PF05773.24, score=54.2]; RING-like zinc finger [PF17123.7, score=33.5]; Ring finger domain [PF13639.8, score=29.5]; RING-type zinc-finger [PF13445.8, score=25.6]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=21.5]; zinc-RING finger domain [PF14634.8, score=21.5]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=20.6]} {Human: ENSG00000163481, RNF25, ring finger protein 25, [RH, Score=118, Expect=2e-28]} {Mouse: ENSMUSG00000026171, Rnf25, ring finger protein 25, [RH, Score=124, Expect=8e-31]} {Dmel: FBgn0033884, CG13344, [RH, Score=90.9, Expect=1e-19]} {Celegans: WBGene00021812, Y53G8AR.5, [RH, Score=54.3, Expect=6e-08]} {RNA1509_47149, RNA1509_6393} {RNA1310_23335, RNA1509_47149} {RNA1509_47149, RNA815_3992.1}
15. MligTC455_36682 1577 32.86 Mlig455_059315

Neo: -

Age: -

Region-enriched R4: 1.145/0.00582

 1.685 0.731 - - - - 0.954 Mlig455_059315 {REF} {Length: 959} {TRANSSPLICED} {RNA1509_18781, RNA1509_41099, RNA1509_54262} {RNA1310_29632, RNA1509_18781, RNA1509_41099, RNA1509_54262} {RNA1509_18781, RNA1509_41099, RNA1509_54262, RNA815_17983}
16. MligTC455_36870 4127 85.99 Mlig455_035433

Neo: Irradiation

Age: Down-Up-Up

Region-enriched R4: 1.158/0.00049
Region-enriched R5: 1.070/0.00006

Regeneration-upregulated BL: 1.133

Regeneration-enriched BL: 1.133

 H2AFV 1.683 - - - 0.956 0.727 - Mlig455_035433 {REF} {Length: 929} {TRANSSPLICED} {Pfam: Core histone H2A/H2B/H3/H4 [PF00125.26, score=69.1]; C-terminus of histone H2A [PF16211.7, score=49.4]} {Human: ENSG00000105968, H2AFV, H2A histone family member V, [RH, Score=224, Expect=8e-77]; ENSG00000164032, H2AFZ, H2A histone family member Z, [RH, Score=223, Expect=2e-76]} {Mouse: ENSMUSG00000041126, H2afv, H2A histone family, member V, [RH, Score=224, Expect=5e-77]; ENSMUSG00000037894, H2afz, H2A histone family, member Z, [RH, Score=223, Expect=2e-76]} {Dmel: FBgn0001197, His2Av, Histone H2A variant, [RH, Score=223, Expect=3e-76]} {Celegans: WBGene00019947, htz-1, Histone H2A.V, [RH, Score=222, Expect=5e-76]} {Smed: dd_Smed_v6_2614_0_1, dd_Smed_v6_2614_0_1, [RH, Score=196, Expect=5e-66]} {RNA1509_18636, RNA1509_4518, RNA1509_6214} {RNA1310_60280, RNA1509_18636, RNA1509_4518, RNA1509_6214} {RNA1509_18636, RNA1509_4518, RNA1509_6214, RNA815_1839.1}
17. MligTC455_36871 4132 86.08 Mlig455_061085

Neo: Irradiation

Age: logFC(26M/2M)=0.831

Region-enriched R4: 1.146/0.00083
Region-enriched R5: 1.080/0.00009

Regeneration-upregulated BL: 1.165

Regeneration-enriched BL: 1.165

 H2AFV 1.67 - - - 0.955 0.715 - Mlig455_061085 {REF} {Length: 929} {TRANSSPLICED} {Pfam: Core histone H2A/H2B/H3/H4 [PF00125.26, score=69.1]; C-terminus of histone H2A [PF16211.7, score=49.4]} {Human: ENSG00000105968, H2AFV, H2A histone family member V, [RH, Score=224, Expect=8e-77]; ENSG00000164032, H2AFZ, H2A histone family member Z, [RH, Score=223, Expect=2e-76]} {Mouse: ENSMUSG00000041126, H2afv, H2A histone family, member V, [RH, Score=224, Expect=5e-77]; ENSMUSG00000037894, H2afz, H2A histone family, member Z, [RH, Score=223, Expect=2e-76]} {Dmel: FBgn0001197, His2Av, Histone H2A variant, [RH, Score=223, Expect=3e-76]} {Celegans: WBGene00019947, htz-1, Histone H2A.V, [RH, Score=222, Expect=5e-76]} {Smed: dd_Smed_v6_2614_0_1, dd_Smed_v6_2614_0_1, [RH, Score=196, Expect=5e-66]} {RNA1509_18636} {RNA1310_60280} {RNA815_1839.1}
18. MligTC455_41862 786 16.38 Mlig455_002905

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.120/0.00029

 ATRX 0.976 - - - 0.976 - - Mlig455_002905 {REF} {Length: 3742} {TRANSSPLICED} {Pfam: Cysteine Rich ADD domain [PF17981.3, score=49.4]} {Human: ENSG00000085224, ATRX, ATRX, chromatin remodeler, [Score=134, Expect=8e-32]} {Mouse: ENSMUSG00000031229, Atrx, ATRX, chromatin remodeler, [Score=137, Expect=1e-32]} {Dmel: FBgn0026573, ADD1, ADD domain-containing protein 1, [RH, Score=107, Expect=1e-23]} {Smed: dd_Smed_v6_6332_0_1, dd_Smed_v6_6332_0_1, [RH, Score=137, Expect=5e-34]} {RNA1509_23710, RNA1509_40627, RNA1509_41487, RNA1509_51493, RNA1509_56296, RNA1509_6503} {RNA1310_2401, RNA1509_23710, RNA1509_40627, RNA1509_41487, RNA1509_51493, RNA1509_56296, RNA1509_6503} {RNA1509_23710, RNA1509_40627, RNA1509_41487, RNA1509_51493, RNA1509_56296, RNA1509_6503, RNA815_2767.1}
19. MligTC455_11265 5352 111.51 Mlig455_020754, Mlig455_020820, Mlig455_036064

Neo: Int S/G2/M

Age: -

 EIF2A 0.955 - - - - - 0.955

Mlig455_020754 {REF} {Length: 235} {NoTransDecoderORF} {RNA1509_22711} {RNA1310_72032} {RNA815_2839.1}

Mlig455_020820 {REF} {Length: 2711} {Pfam: Eukaryotic translation initiation factor eIF2A [PF08662.13, score=202.5]} {Human: ENSG00000144895, EIF2A, eukaryotic translation initiation factor 2A, [RH, Score=407, Expect=3e-135]} {Mouse: ENSMUSG00000027810, Eif2a, eukaryotic translation initiation factor 2A, [RH, Score=423, Expect=2e-141]} {Dmel: FBgn0037135, CG7414, [RH, Score=355, Expect=1e-114]} {Celegans: WBGene00008480, eif-2A, Eukaryotic translation initiation factor 2A, [RH, Score=312, Expect=6e-99]} {Smed: dd_Smed_v6_3705_0_1, dd_Smed_v6_3705_0_1, [RH, Score=218, Expect=5e-64]} {RNA1509_1548} {RNA1310_9127.2} {RNA815_2839.1}

Mlig455_036064 {REF} {Length: 2582} {Pfam: Eukaryotic translation initiation factor eIF2A [PF08662.13, score=202.5]} {Human: ENSG00000144895, EIF2A, eukaryotic translation initiation factor 2A, [RH, Score=407, Expect=3e-135]} {Mouse: ENSMUSG00000027810, Eif2a, eukaryotic translation initiation factor 2A, [RH, Score=423, Expect=2e-141]} {Dmel: FBgn0037135, CG7414, [RH, Score=355, Expect=1e-114]} {Celegans: WBGene00008480, eif-2A, Eukaryotic translation initiation factor 2A, [RH, Score=312, Expect=6e-99]} {Smed: dd_Smed_v6_3705_0_1, dd_Smed_v6_3705_0_1, [RH, Score=218, Expect=5e-64]} {RNA1509_12274, RNA1509_1548, RNA1509_22711, RNA1509_28835} {RNA1310_9127.2, RNA1509_12274, RNA1509_1548, RNA1509_22711, RNA1509_28835} {RNA1509_12274, RNA1509_1548, RNA1509_22711, RNA1509_28835, RNA815_2839.1}
20. MligTC455_43909 1871 38.97 Mlig455_034535

Neo: -

Age: -

Region-enriched R5: 1.131/0.00000

 PRPS1 0.954 - - - 0.954 - - Mlig455_034535 {REF} {Length: 2278} {Pfam: N-terminal domain of ribose phosphate pyrophosphokinase [PF13793.8, score=161.2]; Phosphoribosyl synthetase-associated domain [PF14572.8, score=147.0]; Phosphoribosyl transferase domain [PF00156.29, score=55.6]; Uracil phosphoribosyltransferase [PF14681.8, score=25.7]} {Human: ENSG00000147224, PRPS1, phosphoribosyl pyrophosphate synthetase 1, [RH, Score=552, Expect=0.0]; ENSG00000101911, PRPS2, phosphoribosyl pyrophosphate synthetase 2, [RH, Score=545, Expect=0.0]; ENSG00000229937, PRPS1L1, phosphoribosyl pyrophosphate synthetase 1-like 1, [RH, Score=526, Expect=0.0]} {Mouse: ENSMUSG00000031432, Prps1, phosphoribosyl pyrophosphate synthetase 1, [RH, Score=552, Expect=0.0]; ENSMUSG00000079104, Prps1l3, phosphoribosyl pyrophosphate synthetase 1-like 3, [RH, Score=550, Expect=0.0]; ENSMUSG00000025742, Prps2, phosphoribosyl pyrophosphate synthetase 2, [RH, Score=544, Expect=0.0]; ENSMUSG00000092305, Prps1l1, phosphoribosyl pyrophosphate synthetase 1-like 1, [RH, Score=542, Expect=0.0]} {Dmel: FBgn0036030, CG6767, [RH, Score=543, Expect=0.0]} {Celegans: WBGene00020107, R151.2, [RH, Score=521, Expect=0.0]} {Smed: dd_Smed_v6_2327_0_1, dd_Smed_v6_2327_0_1, [RH, Score=518, Expect=0.0]} {RNA1509_31807, RNA1509_3684, RNA1509_49548} {RNA1310_1271.2, RNA1509_31807, RNA1509_3684, RNA1509_49548} {RNA1509_31807, RNA1509_3684, RNA1509_49548, RNA815_5074.1}
21. MligTC455_53214 114 2.37 Mlig455_066159

Neo: -

Age: Down-Down-Up, logFC(26M/2M)=-0.453

 ITGA3 0.95 - - - - 0.950 - Mlig455_066159 {REF} {Length: 4417} {Pfam: FG-GAP repeat [PF01839.25, score=27.8]; FG-GAP-like repeat [PF13517.8, score=21.0]} {Human: ENSG00000005884, ITGA3, integrin subunit alpha 3, [Score=59.7, Expect=3e-08]} {Mouse: ENSMUSG00000001507, Itga3, integrin alpha 3, [Score=61.2, Expect=7e-09]; ENSMUSG00000039115, Itga9, integrin alpha 9, [Score=59.7, Expect=2e-08]} {Dmel: FBgn0034880, ItgaPS5, Integrin alphaPS5 subunit, [Score=65.1, Expect=4e-10]} {Smed: dd_Smed_v6_8943_0_1, dd_Smed_v6_8943_0_1, [Score=79.3, Expect=8e-15]} {RNA1509_11364} {RNA1310_2443} {RNA815_3043}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA