TomoSeq data search

Data search

Results for MligTC455_28660

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_28660	16005	333.43	Mlig455_017132	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.329	RPL37A	Mlig455_017132 {REF} {Length: 421} {TRANSSPLICED} {Pfam: Ribosomal L37ae protein family [PF01780.21, score=134.9]; C1 domain [PF03107.18, score=19.3]} {Human: ENSG00000197756, RPL37A, ribosomal protein L37a, [RH, Score=139, Expect=3e-44]} {Mouse: ENSMUSG00000046330, Rpl37a, ribosomal protein L37a, [RH, Score=139, Expect=2e-44]} {Dmel: FBgn0261608, RpL37A, Ribosomal protein L37A, [RH, Score=140, Expect=7e-45]} {Celegans: WBGene00004456, rpl-43, 60S ribosomal protein L37a, [RH, Score=132, Expect=7e-42]} {Smed: dd_Smed_v6_140_0_1, dd_Smed_v6_140_0_1, [RH, Score=116, Expect=7e-36]} {RNA1509_37674, RNA1509_8174} {RNA1310_53200.1, RNA1509_37674, RNA1509_8174} {RNA1509_37674, RNA1509_8174, RNA815_27192}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_28660

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.608	8.482	0.07032	0.59430
RegionR2	-0.162	8.482	0.51789	0.89328
RegionR3	0.395	8.482	0.06407	0.44715
RegionR4	0.16	8.482	0.50025	0.82696
RegionR5	0.125	8.482	0.55146	0.91261
RegionR6	0.169	8.482	0.42939	0.99330
RegionR7	0.349	8.482	0.09476	0.58890
RegionR8	-0.429	8.482	0.08340	0.54735

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-0.772	8.482	0.08571	0.78830
RegenerationR2	-0.601	8.482	0.02789	0.27590
RegenerationR3	-0.497	8.482	0.07378	0.45408
RegenerationR4	-0.246	8.482	0.38559	0.80464
RegenerationR5	-0.153	8.482	0.58087	0.90094
RegenerationR6	-0.417	8.482	0.13594	0.45230
RegenerationBL	-0.19	8.482	0.43859	0.80606
RegenerationTP	-0.363	8.482	0.17783	0.61253

Genes with expression patterns similar to MligTC455_28660

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28660	16005	333.43	Mlig455_017132	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.329	RPL37A	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_017132 {REF} {Length: 421} {TRANSSPLICED} {Pfam: Ribosomal L37ae protein family [PF01780.21, score=134.9]; C1 domain [PF03107.18, score=19.3]} {Human: ENSG00000197756, RPL37A, ribosomal protein L37a, [RH, Score=139, Expect=3e-44]} {Mouse: ENSMUSG00000046330, Rpl37a, ribosomal protein L37a, [RH, Score=139, Expect=2e-44]} {Dmel: FBgn0261608, RpL37A, Ribosomal protein L37A, [RH, Score=140, Expect=7e-45]} {Celegans: WBGene00004456, rpl-43, 60S ribosomal protein L37a, [RH, Score=132, Expect=7e-42]} {Smed: dd_Smed_v6_140_0_1, dd_Smed_v6_140_0_1, [RH, Score=116, Expect=7e-36]} {RNA1509_37674, RNA1509_8174} {RNA1310_53200.1, RNA1509_37674, RNA1509_8174} {RNA1509_37674, RNA1509_8174, RNA815_27192}
2.	MligTC455_39789	7445	155.1	Mlig455_028826, Mlig455_036262	Neo: - Age: logFC(26M/2M)=-0.843	GLRA2, RPL35	1.736	0.782	-	-	0.954	-	-	Mlig455_028826 {REF} {Length: 1888} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=140.2]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=101.0]} {Human: ENSG00000101958, GLRA2, glycine receptor alpha 2, [Score=263, Expect=1e-81]; ENSG00000188828, GLRA4, glycine receptor alpha 4, [Score=261, Expect=3e-81]; ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=259, Expect=4e-80]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=256, Expect=3e-79]} {Mouse: ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=266, Expect=5e-83]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=262, Expect=1e-81]; ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=258, Expect=1e-79]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=256, Expect=5e-79]} {Dmel: FBgn0030707, CG8916, [Score=236, Expect=3e-71]} {Celegans: WBGene00001591, glc-1, Glutamate-gated chloride channel alpha, [Score=238, Expect=1e-72]} {Smed: dd_Smed_v6_11342_0_1, dd_Smed_v6_11342_0_1, [Score=275, Expect=5e-87]} {RNA1310_64518} Mlig455_036262 {REF} {Length: 507} {TRANSSPLICED} {Pfam: Ribosomal L29 protein [PF00831.25, score=63.9]} {Human: ENSG00000136942, RPL35, ribosomal protein L35, [RH, Score=140, Expect=6e-44]} {Mouse: ENSMUSG00000078193, Gm2000, predicted gene 2000, [RH, Score=141, Expect=2e-44]; ENSMUSG00000062997, Rpl35, ribosomal protein L35, [RH, Score=141, Expect=2e-44]} {Dmel: FBgn0029785, RpL35, Ribosomal protein L35, [RH, Score=138, Expect=3e-43]} {Celegans: WBGene00004449, rpl-35, 60S ribosomal protein L35, [RH, Score=120, Expect=3e-36]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [RH, Score=104, Expect=5e-30]} {RNA1509_9000} {RNA1310_68306.2} {RNA815_35452}
3.	MligTC455_33042	366	7.62	Mlig455_041855	Neo: - Age: -	RAB3C	0.96	-	-	-	0.960	-	-	Mlig455_041855 {REF} {Length: 2441} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=208.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.1]; ADP-ribosylation factor family [PF00025.23, score=53.7]; Signal recognition particle receptor beta subunit [PF09439.12, score=23.1]; 50S ribosome-binding GTPase [PF01926.25, score=19.3]; Elongation factor Tu GTP binding domain [PF00009.29, score=18.4]} {Human: ENSG00000152932, RAB3C, RAB3C, member RAS oncogene family, [RH, Score=339, Expect=2e-119]; ENSG00000105649, RAB3A, RAB3A, member RAS oncogene family, [RH, Score=330, Expect=6e-116]; ENSG00000105514, RAB3D, RAB3D, member RAS oncogene family, [RH, Score=323, Expect=2e-113]} {Mouse: ENSMUSG00000021700, Rab3c, RAB3C, member RAS oncogene family, [RH, Score=337, Expect=1e-118]; ENSMUSG00000019066, Rab3d, RAB3D, member RAS oncogene family, [RH, Score=334, Expect=1e-117]; ENSMUSG00000031840, Rab3a, RAB3A, member RAS oncogene family, [RH, Score=331, Expect=1e-116]; ENSMUSG00000111277, Rab3a, RAB3A, member RAS onco family, [RH, Score=331, Expect=1e-116]; ENSMUSG00000003411, Rab3b, RAB3B, member RAS oncogene family, [RH, Score=327, Expect=7e-115]} {Dmel: FBgn0005586, Rab3, [RH, Score=346, Expect=1e-122]} {Celegans: WBGene00004267, rab-3, Ras-related protein Rab-3, [RH, Score=336, Expect=2e-118]} {Smed: dd_Smed_v6_5920_0_1, dd_Smed_v6_5920_0_1, [RH, Score=342, Expect=4e-121]} {RNA1509_33673} {RNA1310_14402} {RNA815_5665.1}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_28660

16005

333.43

Mlig455_017132

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.329

RPL37A

1.000

MligTC455_39789

7445

155.1

Mlig455_028826, Mlig455_036262

Neo: -

Age: logFC(26M/2M)=-0.843

GLRA2, RPL35

1.736

0.782

0.954

Mlig455_028826 {REF} {Length: 1888} {Pfam: Neurotransmitter-gated ion-channel ligand binding domain [PF02931.25, score=140.2]; Neurotransmitter-gated ion-channel transmembrane region [PF02932.18, score=101.0]} {Human: ENSG00000101958, GLRA2, glycine receptor alpha 2, [Score=263, Expect=1e-81]; ENSG00000188828, GLRA4, glycine receptor alpha 4, [Score=261, Expect=3e-81]; ENSG00000145451, GLRA3, glycine receptor alpha 3, [Score=259, Expect=4e-80]; ENSG00000145888, GLRA1, glycine receptor alpha 1, [Score=256, Expect=3e-79]} {Mouse: ENSMUSG00000018595, Glra4, glycine receptor, alpha 4 subunit, [Score=266, Expect=5e-83]; ENSMUSG00000018589, Glra2, glycine receptor, alpha 2 subunit, [Score=262, Expect=1e-81]; ENSMUSG00000038257, Glra3, glycine receptor, alpha 3 subunit, [Score=258, Expect=1e-79]; ENSMUSG00000000263, Glra1, glycine receptor, alpha 1 subunit, [Score=256, Expect=5e-79]} {Dmel: FBgn0030707, CG8916, [Score=236, Expect=3e-71]} {Celegans: WBGene00001591, glc-1, Glutamate-gated chloride channel alpha, [Score=238, Expect=1e-72]} {Smed: dd_Smed_v6_11342_0_1, dd_Smed_v6_11342_0_1, [Score=275, Expect=5e-87]} {RNA1310_64518}

Mlig455_036262 {REF} {Length: 507} {TRANSSPLICED} {Pfam: Ribosomal L29 protein [PF00831.25, score=63.9]} {Human: ENSG00000136942, RPL35, ribosomal protein L35, [RH, Score=140, Expect=6e-44]} {Mouse: ENSMUSG00000078193, Gm2000, predicted gene 2000, [RH, Score=141, Expect=2e-44]; ENSMUSG00000062997, Rpl35, ribosomal protein L35, [RH, Score=141, Expect=2e-44]} {Dmel: FBgn0029785, RpL35, Ribosomal protein L35, [RH, Score=138, Expect=3e-43]} {Celegans: WBGene00004449, rpl-35, 60S ribosomal protein L35, [RH, Score=120, Expect=3e-36]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [RH, Score=104, Expect=5e-30]} {RNA1509_9000} {RNA1310_68306.2} {RNA815_35452}

MligTC455_33042

366

7.62

Mlig455_041855

Neo: -

Age: -

RAB3C

0.96

0.960

Mlig455_041855 {REF} {Length: 2441} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=208.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.1]; ADP-ribosylation factor family [PF00025.23, score=53.7]; Signal recognition particle receptor beta subunit [PF09439.12, score=23.1]; 50S ribosome-binding GTPase [PF01926.25, score=19.3]; Elongation factor Tu GTP binding domain [PF00009.29, score=18.4]} {Human: ENSG00000152932, RAB3C, RAB3C, member RAS oncogene family, [RH, Score=339, Expect=2e-119]; ENSG00000105649, RAB3A, RAB3A, member RAS oncogene family, [RH, Score=330, Expect=6e-116]; ENSG00000105514, RAB3D, RAB3D, member RAS oncogene family, [RH, Score=323, Expect=2e-113]} {Mouse: ENSMUSG00000021700, Rab3c, RAB3C, member RAS oncogene family, [RH, Score=337, Expect=1e-118]; ENSMUSG00000019066, Rab3d, RAB3D, member RAS oncogene family, [RH, Score=334, Expect=1e-117]; ENSMUSG00000031840, Rab3a, RAB3A, member RAS oncogene family, [RH, Score=331, Expect=1e-116]; ENSMUSG00000111277, Rab3a, RAB3A, member RAS onco family, [RH, Score=331, Expect=1e-116]; ENSMUSG00000003411, Rab3b, RAB3B, member RAS oncogene family, [RH, Score=327, Expect=7e-115]} {Dmel: FBgn0005586, Rab3, [RH, Score=346, Expect=1e-122]} {Celegans: WBGene00004267, rab-3, Ras-related protein Rab-3, [RH, Score=336, Expect=2e-118]} {Smed: dd_Smed_v6_5920_0_1, dd_Smed_v6_5920_0_1, [RH, Score=342, Expect=4e-121]} {RNA1509_33673} {RNA1310_14402} {RNA815_5665.1}