TomoSeq data search

Data search

Results for MligTC455_28717

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28717

469

9.77

Mlig455_064379

Neo: -

Age: -

NBEA

Mlig455_064379 {REF} {Length: 4709} {Pfam: WD domain, G-beta repeat [PF00400.34, score=33.5]} {Human: ENSG00000172915, NBEA, neurobeachin, [Score=222, Expect=6e-65]; ENSG00000198589, LRBA, LPS responsive beige-like anchor protein, [Score=222, Expect=8e-65]} {Mouse: ENSMUSG00000027799, Nbea, neurobeachin, [Score=222, Expect=4e-65]; ENSMUSG00000028080, Lrba, LPS-responsive beige-like anchor, [Score=221, Expect=5e-66]} {Dmel: FBgn0266098, rg, rugose, [Score=304, Expect=1e-93]} {Celegans: WBGene00004760, sel-2, Putative neurobeachin homolog, [Score=182, Expect=1e-51]} {Smed: dd_Smed_v6_3880_0_1, dd_Smed_v6_3880_0_1, [Score=217, Expect=1e-63]} {RNA1509_10508} {RNA1310_12428} {RNA815_4322}

Cumulative graph for MligTC455_28717

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-1.857	3.612	0.35725	0.99979
RegionR2	-0.227	3.612	0.72951	1.00000
RegionR3	-0.327	3.612	0.57084	1.00000
RegionR4	0.689	3.612	0.25191	0.55162
RegionR5	0.606	3.612	0.17043	0.43965
RegionR6	0.128	3.612	0.79860	1.00000
RegionR7	0.303	3.612	0.62277	1.00000
RegionR8	0.685	3.612	0.30688	0.93926

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.034	3.612	0.98971	1.00000
RegenerationR2	0.367	3.612	0.39652	0.81290
RegenerationR3	0.08	3.612	0.87911	1.00000
RegenerationR4	-0.373	3.612	0.47600	0.85650
RegenerationR5	-0.021	3.612	0.96200	1.00000
RegenerationR6	-0.231	3.612	0.65164	0.89932
RegenerationBL	0.54	3.612	0.31679	0.68338
RegenerationTP	-0.651	3.612	0.30334	0.74892

Genes with expression patterns similar to MligTC455_28717

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28717	469	9.77	Mlig455_064379	Neo: - Age: -	NBEA	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_064379 {REF} {Length: 4709} {Pfam: WD domain, G-beta repeat [PF00400.34, score=33.5]} {Human: ENSG00000172915, NBEA, neurobeachin, [Score=222, Expect=6e-65]; ENSG00000198589, LRBA, LPS responsive beige-like anchor protein, [Score=222, Expect=8e-65]} {Mouse: ENSMUSG00000027799, Nbea, neurobeachin, [Score=222, Expect=4e-65]; ENSMUSG00000028080, Lrba, LPS-responsive beige-like anchor, [Score=221, Expect=5e-66]} {Dmel: FBgn0266098, rg, rugose, [Score=304, Expect=1e-93]} {Celegans: WBGene00004760, sel-2, Putative neurobeachin homolog, [Score=182, Expect=1e-51]} {Smed: dd_Smed_v6_3880_0_1, dd_Smed_v6_3880_0_1, [Score=217, Expect=1e-63]} {RNA1509_10508} {RNA1310_12428} {RNA815_4322}
2.	MligTC455_28716	541	11.27	Mlig455_025780	Neo: - Age: Up-Down-Down	LRBA	5.634	0.980	0.958	0.817	0.965	0.955	0.959	Mlig455_025780 {REF} {Length: 11353} {TRANSSPLICED} {Pfam: Beige/BEACH domain [PF02138.20, score=401.6]; Domain of unknown function (DUF4704) [PF15787.7, score=278.4]; Domain of Unknown Function (DUF1088) [PF06469.13, score=220.0]; PH domain associated with Beige/BEACH [PF14844.8, score=85.4]; Concanavalin A-like lectin/glucanases superfamily [PF13385.8, score=43.5]; WD domain, G-beta repeat [PF00400.34, score=35.5]} {Human: ENSG00000198589, LRBA, LPS responsive beige-like anchor protein, [RH, Score=1306, Expect=0.0]; ENSG00000172915, NBEA, neurobeachin, [RH, Score=1291, Expect=0.0]} {Mouse: ENSMUSG00000028080, Lrba, LPS-responsive beige-like anchor, [RH, Score=1305, Expect=0.0]; ENSMUSG00000027799, Nbea, neurobeachin, [RH, Score=1290, Expect=0.0]} {Dmel: FBgn0266098, rg, rugose, [RH, Score=1776, Expect=0.0]} {Celegans: WBGene00004760, sel-2, Putative neurobeachin homolog, [RH, Score=1279, Expect=0.0]} {Smed: dd_Smed_v6_3880_0_1, dd_Smed_v6_3880_0_1, [RH, Score=2092, Expect=0.0]} {RNA1509_56158, RNA1509_57979} {RNA1310_1088.1, RNA1509_57979} {RNA1509_57979, RNA815_635}
3.	MligTC455_43550	1501	31.28	Mlig455_065262	Neo: - Age: -	SSBP3	0.96	-	-	-	0.960	-	-	Mlig455_065262 {REF} {Length: 4032} {Human: ENSG00000157216, SSBP3, single stranded DNA binding protein 3, [RH, Score=186, Expect=1e-54]; ENSG00000145687, SSBP2, single stranded DNA binding protein 2, [RH, Score=185, Expect=1e-54]} {Mouse: ENSMUSG00000061887, Ssbp3, single-stranded DNA binding protein 3, [RH, Score=186, Expect=1e-54]; ENSMUSG00000003992, Ssbp2, single-stranded DNA binding protein 2, [RH, Score=185, Expect=8e-55]} {Dmel: FBgn0011481, Ssdp, Sequence-specific single-stranded DNA-binding protein, [RH, Score=192, Expect=2e-56]} {Celegans: WBGene00012990, sam-10, Single-stranded DNA-binding protein homolog sam-10, [RH, Score=91.3, Expect=6e-20]} {Smed: dd_Smed_v6_3876_0_1, dd_Smed_v6_3876_0_1, [RH, Score=178, Expect=2e-51]} {RNA1509_12630, RNA1509_17189, RNA1509_19453, RNA1509_29837, RNA1509_36215, RNA1509_39481, RNA1509_51894, RNA1509_55152} {RNA1310_27347, RNA1509_12630, RNA1509_17189, RNA1509_19453, RNA1509_29837, RNA1509_36215, RNA1509_39481, RNA1509_51894, RNA1509_55152} {RNA1509_12630, RNA1509_17189, RNA1509_19453, RNA1509_29837, RNA1509_36215, RNA1509_39481, RNA1509_51894, RNA1509_55152, RNA815_18789}
4.	MligTC455_27694	1453	30.28	Mlig455_010036, Mlig455_054063, Mlig455_063282	Neo: - Age: -	DCC	0.958	-	-	-	0.958	-	-	Mlig455_010036 {REF} {Length: 4981} {Pfam: Fibronectin type III domain [PF00041.23, score=147.7]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=52.7]; Immunoglobulin domain [PF13895.8, score=24.6]; T-cell surface glycoprotein CD3 delta chain [PF16680.7, score=23.2]; Interferon-alpha/beta receptor, fibronectin type III [PF09294.12, score=22.7]; Immunoglobulin domain [PF13927.8, score=21.3]} {Human: ENSG00000187323, DCC, DCC netrin 1 receptor, [Score=97.4, Expect=9e-20]} {Mouse: ENSMUSG00000060534, Dcc, deleted in colorectal carcinoma, [Score=98.2, Expect=4e-20]} {Dmel: FBgn0265296, Dscam2, Down syndrome cell adhesion molecule 2, [Score=67.4, Expect=8e-11]} {Celegans: WBGene00009717, dep-1, Receptor-type tyrosine-protein phosphatase dep-1, [Score=55.8, Expect=2e-07]} {Smed: dd_Smed_v6_10176_0_1, dd_Smed_v6_10176_0_1, [Score=80.1, Expect=6e-15]} {RNA1509_17100} {RNA1310_1215.1} {RNA815_6811.1} Mlig455_054063 {REF} {Length: 4978} {Pfam: Fibronectin type III domain [PF00041.23, score=143.5]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=48.6]; Immunoglobulin domain [PF13895.8, score=24.5]; T-cell surface glycoprotein CD3 delta chain [PF16680.7, score=23.2]; Tissue factor [PF01108.19, score=22.2]; Immunoglobulin domain [PF13927.8, score=21.3]; Interferon-alpha/beta receptor, fibronectin type III [PF09294.12, score=20.1]} {Human: ENSG00000187323, DCC, DCC netrin 1 receptor, [Score=97.1, Expect=1e-19]} {Mouse: ENSMUSG00000060534, Dcc, deleted in colorectal carcinoma, [Score=98.2, Expect=4e-20]} {Dmel: FBgn0265296, Dscam2, Down syndrome cell adhesion molecule 2, [Score=61.2, Expect=7e-09]} {Celegans: WBGene00009717, dep-1, Receptor-type tyrosine-protein phosphatase dep-1, [Score=56.2, Expect=2e-07]} {Smed: dd_Smed_v6_10176_0_1, dd_Smed_v6_10176_0_1, [Score=83.6, Expect=6e-16]} {RNA1509_10424, RNA1509_17100} {RNA1310_1215.1, RNA1509_10424, RNA1509_17100} {RNA1509_10424, RNA1509_17100, RNA815_6811.1} Mlig455_063282 {REF} {Length: 5009} {Pfam: Fibronectin type III domain [PF00041.23, score=148.6]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=53.7]; Interferon-alpha/beta receptor, fibronectin type III [PF09294.12, score=23.4]; Tissue factor [PF01108.19, score=22.8]} {Human: ENSG00000187323, DCC, DCC netrin 1 receptor, [Score=98.2, Expect=3e-20]} {Mouse: ENSMUSG00000060534, Dcc, deleted in colorectal carcinoma, [Score=99.4, Expect=2e-20]} {Dmel: FBgn0265296, Dscam2, Down syndrome cell adhesion molecule 2, [Score=63.2, Expect=1e-09]} {Celegans: WBGene00009717, dep-1, Receptor-type tyrosine-protein phosphatase dep-1, [Score=55.5, Expect=2e-07]} {Smed: dd_Smed_v6_10176_0_1, dd_Smed_v6_10176_0_1, [Score=80.5, Expect=4e-15]} {RNA1509_41673} {RNA1310_1215.1, RNA1509_41673} {RNA1509_41673, RNA815_3801}

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