TomoSeq data search

Data search

Results for MligTC455_28809

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_28809	4	0.08	Mlig455_018130	Neo: - Age: Up-Down-Down	USH2A	Mlig455_018130 {REF} {Length: 16052} {Pfam: Fibronectin type III domain [PF00041.23, score=348.8]; Laminin EGF domain [PF00053.26, score=232.9]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=95.8]; Laminin G domain [PF02210.26, score=81.0]; Laminin G domain [PF00054.25, score=49.2]; Fibronectin type III domain [PF16893.7, score=32.9]; Chitinase A, N-terminal domain [PF08329.12, score=28.9]} {Human: ENSG00000042781, USH2A, usherin, [Score=1942, Expect=0.0]} {Mouse: ENSMUSG00000026609, Ush2a, usherin, [Score=1900, Expect=0.0]} {Dmel: FBgn0261563, wb, wing blister, [Score=231, Expect=6e-60]} {Celegans: WBGene00001328, epi-1, Laminin-like protein epi-1, [Score=281, Expect=2e-75]} {Smed: dd_Smed_v6_7924_0_5, dd_Smed_v6_7924_0_5, [Score=221, Expect=3e-57]} {RNA1509_50725} {RNA1310_15137} {RNA815_23018}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28809

0.08

Mlig455_018130

Neo: -

Age: Up-Down-Down

USH2A

Mlig455_018130 {REF} {Length: 16052} {Pfam: Fibronectin type III domain [PF00041.23, score=348.8]; Laminin EGF domain [PF00053.26, score=232.9]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=95.8]; Laminin G domain [PF02210.26, score=81.0]; Laminin G domain [PF00054.25, score=49.2]; Fibronectin type III domain [PF16893.7, score=32.9]; Chitinase A, N-terminal domain [PF08329.12, score=28.9]} {Human: ENSG00000042781, USH2A, usherin, [Score=1942, Expect=0.0]} {Mouse: ENSMUSG00000026609, Ush2a, usherin, [Score=1900, Expect=0.0]} {Dmel: FBgn0261563, wb, wing blister, [Score=231, Expect=6e-60]} {Celegans: WBGene00001328, epi-1, Laminin-like protein epi-1, [Score=281, Expect=2e-75]} {Smed: dd_Smed_v6_7924_0_5, dd_Smed_v6_7924_0_5, [Score=221, Expect=3e-57]} {RNA1509_50725} {RNA1310_15137} {RNA815_23018}

Cumulative graph for MligTC455_28809

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-	-	-	-
RegionR2	-	-	-	-
RegionR3	-	-	-	-
RegionR4	-	-	-	-
RegionR5	-	-	-	-
RegionR6	-	-	-	-
RegionR7	-	-	-	-
RegionR8	-	-	-	-

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	-	-	-	-
RegenerationR2	-	-	-	-
RegenerationR3	-	-	-	-
RegenerationR4	-	-	-	-
RegenerationR5	-	-	-	-
RegenerationR6	-	-	-	-
RegenerationBL	-	-	-	-
RegenerationTP	-	-	-	-

Genes with expression patterns similar to MligTC455_28809

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28809	4	0.08	Mlig455_018130	Neo: - Age: Up-Down-Down	USH2A	1	-	-	-	-	-	1.000	Mlig455_018130 {REF} {Length: 16052} {Pfam: Fibronectin type III domain [PF00041.23, score=348.8]; Laminin EGF domain [PF00053.26, score=232.9]; Purple acid Phosphatase, N-terminal domain [PF16656.7, score=95.8]; Laminin G domain [PF02210.26, score=81.0]; Laminin G domain [PF00054.25, score=49.2]; Fibronectin type III domain [PF16893.7, score=32.9]; Chitinase A, N-terminal domain [PF08329.12, score=28.9]} {Human: ENSG00000042781, USH2A, usherin, [Score=1942, Expect=0.0]} {Mouse: ENSMUSG00000026609, Ush2a, usherin, [Score=1900, Expect=0.0]} {Dmel: FBgn0261563, wb, wing blister, [Score=231, Expect=6e-60]} {Celegans: WBGene00001328, epi-1, Laminin-like protein epi-1, [Score=281, Expect=2e-75]} {Smed: dd_Smed_v6_7924_0_5, dd_Smed_v6_7924_0_5, [Score=221, Expect=3e-57]} {RNA1509_50725} {RNA1310_15137} {RNA815_23018}
2.	MligTC455_14144	39	0.81	Mlig455_019306	Neo: - Age: -		0.966	-	-	-	-	-	0.966	Mlig455_019306 {REF} {Length: 511} {TRANSSPLICED}
3.	MligTC455_50213	48	1	Mlig455_054495	Neo: - Age: Down-Up-Down, logFC(26M/2M)=3.341	ASGR1	0.961	-	-	-	-	-	0.961	Mlig455_054495 {REF} {Length: 6279} {Pfam: Lectin C-type domain [PF00059.23, score=36.4]} {Human: ENSG00000141505, ASGR1, asialoglycoprotein receptor 1, [Score=58.5, Expect=2e-08]} {Mouse: ENSMUSG00000071158, Gm156, predicted gene 156, [RH, Score=57.0, Expect=2e-08]} {RNA1509_3056} {RNA1310_1380.1} {RNA815_414}
4.	MligTC455_16154	101	2.11	Mlig455_036031	Neo: - Age: - Region-enriched R5: 2.419/0.00639	TAF11	0.956	-	-	-	-	-	0.956	Mlig455_036031 {REF} {Length: 2010} {TRANSSPLICED} {Pfam: hTAFII28-like protein conserved region [PF04719.16, score=111.0]} {Human: ENSG00000064995, TAF11, TATA-box binding protein associated factor 11, [RH, Score=126, Expect=3e-36]} {Mouse: ENSMUSG00000024218, Taf11, TATA-box binding protein associated factor 11, [RH, Score=125, Expect=4e-36]} {Dmel: FBgn0011291, Taf11, TBP-associated factor 11, [RH, Score=115, Expect=1e-32]} {Celegans: WBGene00006393, taf-11.1, TAF (TBP-associated transcription factor) family, [RH, Score=107, Expect=3e-28]} {Smed: dd_Smed_v6_7233_0_1, dd_Smed_v6_7233_0_1, [RH, Score=120, Expect=2e-34]} {RNA1509_32295, RNA1509_41005} {RNA1310_42433.2, RNA1509_41005} {RNA1509_41005, RNA815_23456}
5.	MligTC455_04485	19	0.39	Mlig455_000247	Neo: - Age: -	KIF26A	0.952	-	-	-	-	-	0.952	Mlig455_000247 {REF} {Length: 4872} {Pfam: Kinesin motor domain [PF00225.25, score=100.1]} {Human: ENSG00000066735, KIF26A, kinesin family member 26A, [Score=253, Expect=3e-68]} {Mouse: ENSMUSG00000021294, Kif26a, kinesin family member 26A, [Score=281, Expect=3e-77]} {Dmel: FBgn0031955, CG14535, [Score=169, Expect=3e-42]} {Celegans: WBGene00006874, vab-8, Kinesin-like protein vab-8, [Score=118, Expect=9e-27]} {Smed: dd_Smed_v6_13562_0_2, dd_Smed_v6_13562_0_2, [Score=286, Expect=3e-79]} {RNA1509_37690} {RNA1310_5463} {RNA815_17479}
6.	MligTC455_57354	4	0.08	Mlig455_031422	Neo: - Age: -		0.951	-	-	-	-	-	0.951	Mlig455_031422 {REF} {Length: 298} {NoTransDecoderORF} {RNA1310_78920.2}