M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_28856

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_28856 18 0.37 Mlig455_044705

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.861

 ERAL1 Mlig455_044705 {REF} {Length: 3059} {Human: ENSG00000132591, ERAL1, Era like 12S mitochondrial rRNA chaperone 1, [Score=49.7, Expect=7e-06]} {Mouse: ENSMUSG00000020832, Eral1, Era (G-protein)-like 1 (E. coli), [Score=58.9, Expect=6e-09]} {Smed: dd_Smed_v6_6692_0_1, dd_Smed_v6_6692_0_1, [Score=128, Expect=4e-32]} {RNA1509_12179, RNA1509_9591} {RNA1310_34124, RNA1509_9591} {RNA1509_9591, RNA815_3293}

Cumulative graph for MligTC455_28856

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_28856

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_28856 18 0.37 Mlig455_044705

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.861

 ERAL1 1 - - - - 1.000 - Mlig455_044705 {REF} {Length: 3059} {Human: ENSG00000132591, ERAL1, Era like 12S mitochondrial rRNA chaperone 1, [Score=49.7, Expect=7e-06]} {Mouse: ENSMUSG00000020832, Eral1, Era (G-protein)-like 1 (E. coli), [Score=58.9, Expect=6e-09]} {Smed: dd_Smed_v6_6692_0_1, dd_Smed_v6_6692_0_1, [Score=128, Expect=4e-32]} {RNA1509_12179, RNA1509_9591} {RNA1310_34124, RNA1509_9591} {RNA1509_9591, RNA815_3293}
2. MligTC455_32964 66 1.37 Mlig455_037553, Mlig455_059594

Neo: Irradiation

Age: -

 NRF1 0.951 - - - - 0.951 -

Mlig455_037553 {REF} {Length: 2063} {Pfam: NLS-binding and DNA-binding and dimerisation domains of Nrf1 [PF10491.11, score=110.4]} {Human: ENSG00000106459, NRF1, nuclear respiratory factor 1, [RH, Score=77.4, Expect=2e-14]} {Mouse: ENSMUSG00000058440, Nrf1, nuclear respiratory factor 1, [RH, Score=78.2, Expect=5e-15]} {Dmel: FBgn0005427, ewg, erect wing, [RH, Score=72.4, Expect=5e-13]} {RNA1509_54499} {RNA1310_14122} {RNA815_4613.1}

Mlig455_059594 {REF} {Length: 4583} {Pfam: NLS-binding and DNA-binding and dimerisation domains of Nrf1 [PF10491.11, score=112.8]} {Human: ENSG00000106459, NRF1, nuclear respiratory factor 1, [RH, Score=77.0, Expect=2e-14]} {Mouse: ENSMUSG00000058440, Nrf1, nuclear respiratory factor 1, [RH, Score=77.4, Expect=1e-14]} {Dmel: FBgn0005427, ewg, erect wing, [RH, Score=73.6, Expect=2e-13]} {RNA1509_54499} {RNA1310_14122} {RNA815_4613.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA