M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32964

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32964 66 1.37 Mlig455_037553, Mlig455_059594

Neo: Irradiation

Age: -

 NRF1

Mlig455_037553 {REF} {Length: 2063} {Pfam: NLS-binding and DNA-binding and dimerisation domains of Nrf1 [PF10491.11, score=110.4]} {Human: ENSG00000106459, NRF1, nuclear respiratory factor 1, [RH, Score=77.4, Expect=2e-14]} {Mouse: ENSMUSG00000058440, Nrf1, nuclear respiratory factor 1, [RH, Score=78.2, Expect=5e-15]} {Dmel: FBgn0005427, ewg, erect wing, [RH, Score=72.4, Expect=5e-13]} {RNA1509_54499} {RNA1310_14122} {RNA815_4613.1}

Mlig455_059594 {REF} {Length: 4583} {Pfam: NLS-binding and DNA-binding and dimerisation domains of Nrf1 [PF10491.11, score=112.8]} {Human: ENSG00000106459, NRF1, nuclear respiratory factor 1, [RH, Score=77.0, Expect=2e-14]} {Mouse: ENSMUSG00000058440, Nrf1, nuclear respiratory factor 1, [RH, Score=77.4, Expect=1e-14]} {Dmel: FBgn0005427, ewg, erect wing, [RH, Score=73.6, Expect=2e-13]} {RNA1509_54499} {RNA1310_14122} {RNA815_4613.1}

Cumulative graph for MligTC455_32964

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -2.004 1.714 0.72463 1.00000
RegionR2 -1.475 1.714 0.99702 1.00000
RegionR3 -1.07 1.714 0.99152 1.00000
RegionR4 1.645 1.714 0.18085 0.45124
RegionR5 1.502 1.714 0.07355 0.24673
RegionR6 -0.814 1.714 0.98302 1.00000
RegionR7 0.778 1.714 0.56751 1.00000
RegionR8 1.438 1.714 0.40762 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -2.707 1.714 0.99986 1.00000
RegenerationR2 0.308 1.714 0.67563 0.94745
RegenerationR3 -1.016 1.714 0.33328 0.75865
RegenerationR4 -1.636 1.714 0.05854 0.38860
RegenerationR5 -0.944 1.714 0.11902 0.51765
RegenerationR6 -0.236 1.714 0.79215 0.97354
RegenerationBL -5.715 1.714 0.01110 0.10713
RegenerationTP -4.791 1.714 0.01414 0.20341


Genes with expression patterns similar to MligTC455_32964

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32964 66 1.37 Mlig455_037553, Mlig455_059594

Neo: Irradiation

Age: -

 NRF1 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_037553 {REF} {Length: 2063} {Pfam: NLS-binding and DNA-binding and dimerisation domains of Nrf1 [PF10491.11, score=110.4]} {Human: ENSG00000106459, NRF1, nuclear respiratory factor 1, [RH, Score=77.4, Expect=2e-14]} {Mouse: ENSMUSG00000058440, Nrf1, nuclear respiratory factor 1, [RH, Score=78.2, Expect=5e-15]} {Dmel: FBgn0005427, ewg, erect wing, [RH, Score=72.4, Expect=5e-13]} {RNA1509_54499} {RNA1310_14122} {RNA815_4613.1}

Mlig455_059594 {REF} {Length: 4583} {Pfam: NLS-binding and DNA-binding and dimerisation domains of Nrf1 [PF10491.11, score=112.8]} {Human: ENSG00000106459, NRF1, nuclear respiratory factor 1, [RH, Score=77.0, Expect=2e-14]} {Mouse: ENSMUSG00000058440, Nrf1, nuclear respiratory factor 1, [RH, Score=77.4, Expect=1e-14]} {Dmel: FBgn0005427, ewg, erect wing, [RH, Score=73.6, Expect=2e-13]} {RNA1509_54499} {RNA1310_14122} {RNA815_4613.1}
2. MligTC455_16032 77 1.61 Mlig455_037337

Neo: Irradiation

Age: Down-Down-Down, logFC(26M/2M)=-0.885

 1.713 0.959 - - - 0.754 - Mlig455_037337 {REF} {Length: 3079} {Pfam: Neuralized [PF07177.14, score=30.4]} {RNA1310_49372}
3. MligTC455_13190 29 0.61 Mlig455_000845

Neo: -

Age: -

 1.707 - - - - 0.750 0.957 Mlig455_000845 {REF} {Length: 942} {NoTransDecoderORF} {RNA1509_5595} {RNA1310_85669} {RNA815_47511}
4. MligTC455_32279 37 0.77 Mlig455_010823, Mlig455_010830

Neo: -

Age: -

 0.959 - - - - - 0.959

Mlig455_010823 {REF} {Length: 1312} {RNA1509_38619} {RNA1310_18833} {RNA815_8161}

Mlig455_010830 {REF} {Length: 310} {NoTransDecoderORF} {RNA815_52640}
5. MligTC455_47724 33 0.69 Mlig455_019262

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=-0.666

 ANK2 0.955 - - - - - 0.955 Mlig455_019262 {REF} {Length: 2041} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=141.5]; Ankyrin repeats (many copies) [PF13637.8, score=111.3]; Ankyrin repeat [PF13606.8, score=94.1]; Ankyrin repeat [PF00023.32, score=92.6]; Ankyrin repeats (many copies) [PF13857.8, score=88.8]} {Human: ENSG00000145362, ANK2, ankyrin 2, [Score=97.4, Expect=1e-20]; ENSG00000151150, ANK3, ankyrin 3, [Score=95.5, Expect=9e-20]} {Mouse: ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=96.3, Expect=3e-20]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=95.9, Expect=4e-20]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=82.8, Expect=2e-16]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=83.6, Expect=1e-16]} {Smed: dd_Smed_v6_10835_0_1, dd_Smed_v6_10835_0_1, [Score=83.2, Expect=1e-16]} {RNA1509_10844} {RNA1310_6519} {RNA815_7473}
6. MligTC455_08175 30 0.62 Mlig455_002592

Neo: -

Age: -

 RABEP1 0.953 - - - 0.953 - - Mlig455_002592 {REF} {Length: 1551} {TRANSSPLICED} {Pfam: Rabaptin-like protein [PF09311.13, score=107.3]; FYVE zinc finger [PF01363.23, score=25.6]; TPR/MLP1/MLP2-like protein [PF07926.14, score=19.1]} {Human: ENSG00000029725, RABEP1, rabaptin, RAB GTPase binding effector protein 1, [RH, Score=78.2, Expect=1e-14]} {Mouse: ENSMUSG00000020817, Rabep1, rabaptin, RAB GTPase binding effector protein 1, [RH, Score=76.3, Expect=3e-14]} {Dmel: FBgn0034585, Rbpn-5, Rabaptin-5, [Score=144, Expect=6e-37]} {Celegans: WBGene00017161, rabn-5, RABaptiN (Rab effector), [RH, Score=178, Expect=5e-51]} {Smed: dd_Smed_v6_5961_0_1, dd_Smed_v6_5961_0_1, [RH, Score=164, Expect=7e-44]} {RNA1509_22986} {RNA1310_17533.1, RNA1509_22986} {RNA1509_22986, RNA815_6270}
7. MligTC455_35586 172 3.59 Mlig455_008537, Mlig455_026282, Mlig455_036632, Mlig455_036708

Neo: -

Age: -

 0.952 - - - - 0.952 -

Mlig455_008537 {REF} {Length: 2379} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=24.0]; Aspartyl protease [PF13650.8, score=20.6]} {RNA1509_52151} {RNA1310_16257} {RNA815_12222}

Mlig455_026282 {REF} {Length: 2920} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=23.9]; Aspartyl protease [PF13650.8, score=20.6]} {RNA1509_52151} {RNA1310_16257} {RNA815_12222}

Mlig455_036632 {REF} {Length: 2822} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=22.4]; Aspartyl protease [PF13650.8, score=19.8]} {RNA1509_52151} {RNA1310_16257} {RNA815_12222}

Mlig455_036708 {REF} {Length: 2900} {Pfam: gag-polyprotein putative aspartyl protease [PF13975.8, score=26.4]; Aspartyl protease [PF13650.8, score=23.2]} {RNA1509_52151} {RNA1310_16257} {RNA815_12222}
8. MligTC455_28856 18 0.37 Mlig455_044705

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-0.861

 ERAL1 0.951 - - - - 0.951 - Mlig455_044705 {REF} {Length: 3059} {Human: ENSG00000132591, ERAL1, Era like 12S mitochondrial rRNA chaperone 1, [Score=49.7, Expect=7e-06]} {Mouse: ENSMUSG00000020832, Eral1, Era (G-protein)-like 1 (E. coli), [Score=58.9, Expect=6e-09]} {Smed: dd_Smed_v6_6692_0_1, dd_Smed_v6_6692_0_1, [Score=128, Expect=4e-32]} {RNA1509_12179, RNA1509_9591} {RNA1310_34124, RNA1509_9591} {RNA1509_9591, RNA815_3293}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA