TomoSeq data search

Data search

Results for MligTC455_28891

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28891

200

4.16

Mlig455_042150, Mlig455_046485

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.423

Mlig455_042150 {REF} {Length: 6569} {TRANSSPLICED} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=136.9]} {Celegans: WBGene00007723, C25F9.2, [Score=337, Expect=5e-100]} {RNA1509_52872} {RNA1310_2280.1} {RNA815_694.2}

Mlig455_046485 {REF} {Length: 7166} {TRANSSPLICED} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=136.4]} {Celegans: WBGene00007723, C25F9.2, [RH, Score=383, Expect=3e-111]} {RNA1509_4648} {RNA1310_2280.1} {RNA815_694.2}

Cumulative graph for MligTC455_28891

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-3.012	2.519	0.36662	1.00000
RegionR2	0.575	2.519	0.50114	0.88068
RegionR3	0.662	2.519	0.34251	0.87850
RegionR4	0.507	2.519	0.54048	0.86291
RegionR5	-0.171	2.519	0.89276	1.00000
RegionR6	0.065	2.519	0.91111	1.00000
RegionR7	0.566	2.519	0.54240	1.00000
RegionR8	0.809	2.519	0.45238	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	2.736	2.519	0.52532	1.00000
RegenerationR2	-1.176	2.519	0.04764	0.36012
RegenerationR3	-0.88	2.519	0.16795	0.60243
RegenerationR4	-0.165	2.519	0.79776	0.98561
RegenerationR5	0.691	2.519	0.24888	0.68264
RegenerationR6	0.692	2.519	0.29433	0.64495
RegenerationBL	1.273	2.519	0.06155	0.28826
RegenerationTP	-0.11	2.519	0.89804	1.00000

Genes with expression patterns similar to MligTC455_28891

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28891	200	4.16	Mlig455_042150, Mlig455_046485	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.423		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_042150 {REF} {Length: 6569} {TRANSSPLICED} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=136.9]} {Celegans: WBGene00007723, C25F9.2, [Score=337, Expect=5e-100]} {RNA1509_52872} {RNA1310_2280.1} {RNA815_694.2} Mlig455_046485 {REF} {Length: 7166} {TRANSSPLICED} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=136.4]} {Celegans: WBGene00007723, C25F9.2, [RH, Score=383, Expect=3e-111]} {RNA1509_4648} {RNA1310_2280.1} {RNA815_694.2}
2.	MligTC455_28892	179	3.72	Mlig455_007370, Mlig455_049729, Mlig455_052852	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-2.241	THAP1	3.629	0.842	0.977	-	0.877	-	0.933	Mlig455_007370 {REF} {Length: 5352} {Pfam: THAP domain [PF05485.14, score=56.2]; Transposase protein [PF12017.10, score=33.5]} {Human: ENSG00000131931, THAP1, THAP domain containing 1, [Score=62.4, Expect=2e-10]; ENSG00000176946, THAP4, THAP domain containing 4, [Score=61.2, Expect=3e-09]} {Mouse: ENSMUSG00000026279, Thap4, THAP domain containing 4, [Score=61.2, Expect=2e-09]; ENSMUSG00000037214, Thap1, THAP domain containing, apoptosis associated protein 1, [Score=59.7, Expect=8e-10]} {RNA1509_24900} {RNA1310_10644} {RNA815_459.1} Mlig455_049729 {REF} {Length: 3345} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=32.8]} {Celegans: WBGene00007723, C25F9.2, [Score=80.1, Expect=1e-17]} {RNA1509_17816} {RNA1310_26499} {RNA815_694.1} Mlig455_052852 {REF} {Length: 2259} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=31.0]} {Celegans: WBGene00007723, C25F9.2, [Score=82.0, Expect=3e-17]} {RNA1509_52872} {RNA1310_37355} {RNA815_694.2}
3.	MligTC455_26159	40212	837.74	Mlig455_020142, Mlig455_045024	Neo: - Age: Down-Up-Up, logFC(26M/2M)=0.997		0.97	-	-	-	-	0.970	-	Mlig455_020142 {REF} {Length: 927} {RNA1509_9299} {RNA1310_41517.1} {RNA815_16981} Mlig455_045024 {REF} {Length: 949} {RNA1509_18818, RNA1509_2004, RNA1509_51734, RNA1509_9299} {RNA1310_41517.1, RNA1509_18818, RNA1509_2004, RNA1509_51734, RNA1509_9299} {RNA1509_18818, RNA1509_2004, RNA1509_51734, RNA1509_9299, RNA815_16981}
4.	MligTC455_13543	2996	62.41	Mlig455_061274	Neo: - Age: Down-Down-Up, logFC(26M/2M)=2.822 Region-enriched R8: 4.657/0.00118 Region-enriched R7: 4.379/0.00015 Regeneration-enriched R5: 8.225 Regeneration-enriched R3: 6.769 Regeneration-enriched R6: 6.010 Regeneration-enriched R2: 5.476 Regeneration-enriched R4: 5.384 Regeneration-enriched BL: 4.304		0.968	-	-	-	-	0.968	-	Mlig455_061274 {REF} {Length: 605} {RNA1509_246} {RNA1310_82068} {RNA815_1838.3}
5.	MligTC455_48930	897	18.69	Mlig455_062351, Mlig455_062364, Mlig455_062383	Neo: - Age: logFC(26M/2M)=-0.487 Regeneration-enriched BL: 1.778 Regeneration-enriched R6: 1.642	SNRPB2	0.966	-	-	-	0.966	-	-	Mlig455_062351 {REF} {Length: 3624} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=74.4]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=37.4]} {Human: ENSG00000125870, SNRPB2, small nuclear ribonucleoprotein polypeptide B2, [Score=200, Expect=4e-64]; ENSG00000077312, SNRPA, small nuclear ribonucleoprotein polypeptide A, [Score=191, Expect=9e-60]} {Mouse: ENSMUSG00000008333, Snrpb2, U2 small nuclear ribonucleoprotein B, [Score=203, Expect=1e-65]} {Dmel: FBgn0003449, snf, sans fille, [Score=174, Expect=2e-54]} {Celegans: WBGene00004386, rnp-3, RNP (RRM RNA binding domain) containing, [Score=164, Expect=1e-50]} {Smed: dd_Smed_v6_2444_0_1, dd_Smed_v6_2444_0_1, [Score=196, Expect=6e-63]} {RNA1509_22935, RNA1509_25711} {RNA1310_2913, RNA1509_25711} {RNA1509_25711, RNA815_7310} Mlig455_062364 {REF} {Length: 2011} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=74.4]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=37.4]} {Human: ENSG00000125870, SNRPB2, small nuclear ribonucleoprotein polypeptide B2, [Score=200, Expect=4e-64]; ENSG00000077312, SNRPA, small nuclear ribonucleoprotein polypeptide A, [Score=191, Expect=9e-60]} {Mouse: ENSMUSG00000008333, Snrpb2, U2 small nuclear ribonucleoprotein B, [Score=203, Expect=1e-65]} {Dmel: FBgn0003449, snf, sans fille, [Score=174, Expect=2e-54]} {Celegans: WBGene00004386, rnp-3, RNP (RRM RNA binding domain) containing, [Score=164, Expect=1e-50]} {Smed: dd_Smed_v6_2444_0_1, dd_Smed_v6_2444_0_1, [Score=196, Expect=6e-63]} {RNA1509_22935} {RNA1310_2913} {RNA815_7310} Mlig455_062383 {REF} {Length: 2026} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=74.2]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF13893.8, score=37.5]} {Human: ENSG00000125870, SNRPB2, small nuclear ribonucleoprotein polypeptide B2, [Score=202, Expect=5e-65]; ENSG00000077312, SNRPA, small nuclear ribonucleoprotein polypeptide A, [Score=192, Expect=5e-60]} {Mouse: ENSMUSG00000008333, Snrpb2, U2 small nuclear ribonucleoprotein B, [Score=206, Expect=1e-66]} {Dmel: FBgn0003449, snf, sans fille, [Score=175, Expect=9e-55]} {Celegans: WBGene00004386, rnp-3, RNP (RRM RNA binding domain) containing, [Score=164, Expect=1e-50]} {Smed: dd_Smed_v6_2444_0_1, dd_Smed_v6_2444_0_1, [Score=199, Expect=6e-64]} {RNA1509_22935, RNA1509_35461} {RNA1310_2913, RNA1509_35461} {RNA1509_35461, RNA815_7310}
6.	MligTC455_18148	1499	31.23	Mlig455_048309, Mlig455_048353	Neo: Int S/G2/M Age: -	U2AF1L5	0.957	-	-	-	0.957	-	-	Mlig455_048309 {REF} {Length: 2547} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=51.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=28.7]; Torus domain [PF16131.7, score=25.9]; Zinc finger domain [PF18345.3, score=24.1]} {Human: ENSG00000275895, U2AF1L5, U2 small nuclear RNA auxiliary factor 1 like 5, [RH, Score=337, Expect=3e-118]; ENSG00000160201, U2AF1, U2 small nuclear RNA auxiliary factor 1, [RH, Score=337, Expect=3e-118]} {Mouse: ENSMUSG00000061613, U2af1, U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, [RH, Score=337, Expect=2e-118]; ENSMUSG00000078765, U2af1l4, U2 small nuclear RNA auxiliary factor 1-like 4, [RH, Score=332, Expect=1e-116]; ENSMUSG00000109378, Gm49396, predicted gene, 49396, [RH, Score=332, Expect=1e-116]} {Dmel: FBgn0017457, U2af38, U2 small nuclear riboprotein auxiliary factor 38, [RH, Score=329, Expect=6e-115]} {Celegans: WBGene00006698, uaf-2, U2AF splicing factor, [RH, Score=265, Expect=3e-89]} {Smed: dd_Smed_v6_4061_0_2, dd_Smed_v6_4061_0_2, [RH, Score=361, Expect=3e-128]} {RNA1509_16766, RNA1509_16935} {RNA1310_24807, RNA1509_16766, RNA1509_16935} {RNA1509_16766, RNA1509_16935, RNA815_15940.1} Mlig455_048353 {REF} {Length: 1999} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=51.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=28.7]; Torus domain [PF16131.7, score=25.9]; Zinc finger domain [PF18345.3, score=24.1]} {Human: ENSG00000275895, U2AF1L5, U2 small nuclear RNA auxiliary factor 1 like 5, [RH, Score=337, Expect=3e-118]; ENSG00000160201, U2AF1, U2 small nuclear RNA auxiliary factor 1, [RH, Score=337, Expect=3e-118]} {Mouse: ENSMUSG00000061613, U2af1, U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, [RH, Score=337, Expect=2e-118]; ENSMUSG00000078765, U2af1l4, U2 small nuclear RNA auxiliary factor 1-like 4, [RH, Score=332, Expect=1e-116]; ENSMUSG00000109378, Gm49396, predicted gene, 49396, [RH, Score=332, Expect=1e-116]} {Dmel: FBgn0017457, U2af38, U2 small nuclear riboprotein auxiliary factor 38, [RH, Score=329, Expect=6e-115]} {Celegans: WBGene00006698, uaf-2, U2AF splicing factor, [RH, Score=265, Expect=3e-89]} {Smed: dd_Smed_v6_4061_0_2, dd_Smed_v6_4061_0_2, [RH, Score=361, Expect=3e-128]} {RNA1509_16935} {RNA1310_24807} {RNA815_15940.1}
7.	MligTC455_23985	2312	48.16	Mlig455_026481, Mlig455_026491	Neo: - Age: logFC(26M/2M)=0.245	CAP1, CAP2	0.956	-	-	-	0.956	-	-	Mlig455_026481 {REF} {Length: 3784} {TRANSSPLICED} {Pfam: Adenylate cyclase associated (CAP) C terminal [PF08603.13, score=200.8]; Tubulin binding cofactor C [PF07986.14, score=21.2]} {Human: ENSG00000112186, CAP2, cyclase associated actin cytoskeleton regulatory protein 2, [RH, Score=334, Expect=5e-107]; ENSG00000131236, CAP1, cyclase associated actin cytoskeleton regulatory protein 1, [RH, Score=329, Expect=5e-105]} {Mouse: ENSMUSG00000028656, Cap1, CAP, adenylate cyclase-associated protein 1 (yeast), [RH, Score=328, Expect=4e-105]; ENSMUSG00000021373, Cap2, CAP, adenylate cyclase-associated protein, 2 (yeast), [RH, Score=317, Expect=2e-100]} {Dmel: FBgn0261458, capt, capulet, [Score=305, Expect=5e-97]} {Celegans: WBGene00000294, cas-1, Adenylyl cyclase-associated protein, [RH, Score=280, Expect=2e-86]} {Smed: dd_Smed_v6_727_0_1, dd_Smed_v6_727_0_1, [Score=327, Expect=4e-105]} {RNA1509_4225} {RNA1310_9728.1} {RNA815_1685.1} Mlig455_026491 {REF} {Length: 5884} {Human: ENSG00000131236, CAP1, cyclase associated actin cytoskeleton regulatory protein 1, [RH, Score=144, Expect=4e-39]} {Mouse: ENSMUSG00000021373, Cap2, CAP, adenylate cyclase-associated protein, 2 (yeast), [Score=143, Expect=6e-37]; ENSMUSG00000028656, Cap1, CAP, adenylate cyclase-associated protein 1 (yeast), [Score=137, Expect=4e-35]} {Dmel: FBgn0261458, capt, capulet, [Score=137, Expect=3e-35]} {Celegans: WBGene00000294, cas-1, Adenylyl cyclase-associated protein, [Score=127, Expect=1e-31]} {Smed: dd_Smed_v6_727_0_1, dd_Smed_v6_727_0_1, [Score=126, Expect=2e-31]} {RNA1509_15307, RNA1509_38774, RNA1509_4225, RNA1509_44190} {RNA1310_9728.1, RNA1509_15307, RNA1509_38774, RNA1509_44190} {RNA1509_15307, RNA1509_38774, RNA1509_44190, RNA815_1685.1}
8.	MligTC455_18147	739	15.4	Mlig455_048333	Neo: - Age: logFC(26M/2M)=-0.518	U2AF1L5	0.955	-	-	-	0.955	-	-	Mlig455_048333 {REF} {Length: 2682} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=51.0]; RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=28.7]; Torus domain [PF16131.7, score=25.9]; Zinc finger domain [PF18345.3, score=24.1]} {Human: ENSG00000275895, U2AF1L5, U2 small nuclear RNA auxiliary factor 1 like 5, [RH, Score=337, Expect=3e-118]; ENSG00000160201, U2AF1, U2 small nuclear RNA auxiliary factor 1, [RH, Score=337, Expect=3e-118]} {Mouse: ENSMUSG00000061613, U2af1, U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, [RH, Score=337, Expect=2e-118]; ENSMUSG00000078765, U2af1l4, U2 small nuclear RNA auxiliary factor 1-like 4, [RH, Score=332, Expect=1e-116]; ENSMUSG00000109378, Gm49396, predicted gene, 49396, [RH, Score=332, Expect=1e-116]} {Dmel: FBgn0017457, U2af38, U2 small nuclear riboprotein auxiliary factor 38, [RH, Score=329, Expect=6e-115]} {Celegans: WBGene00006698, uaf-2, U2AF splicing factor, [RH, Score=265, Expect=3e-89]} {Smed: dd_Smed_v6_4061_0_2, dd_Smed_v6_4061_0_2, [RH, Score=361, Expect=3e-128]} {RNA1509_16935, RNA1509_57826} {RNA1310_24807, RNA1509_57826} {RNA1509_57826, RNA815_15940.1}
9.	MligTC455_26835	1127	23.48	Mlig455_010954, Mlig455_033107, Mlig455_033135	Neo: - Age: Down-Down-Up		0.954	-	-	-	0.954	-	-	Mlig455_010954 {REF} {Length: 3832} {Pfam: Fibronectin type III domain [PF00041.23, score=20.8]} {RNA1509_13217} {RNA1310_2979.1} {RNA815_922.1} Mlig455_033107 {REF} {Length: 3799} {Pfam: Immunoglobulin domain [PF13927.8, score=34.9]; Immunoglobulin I-set domain [PF07679.18, score=34.6]; Immunoglobulin domain [PF13895.8, score=31.0]; Immunoglobulin domain [PF00047.27, score=21.2]; Fibronectin type III domain [PF00041.23, score=21.0]} {RNA1509_13217} {RNA1310_2979.1, RNA1509_13217} {RNA1509_13217, RNA815_922.1} Mlig455_033135 {REF} {Length: 3753} {Pfam: Immunoglobulin domain [PF13927.8, score=34.3]; Immunoglobulin I-set domain [PF07679.18, score=34.2]; Immunoglobulin domain [PF13895.8, score=30.9]; Fibronectin type III domain [PF00041.23, score=21.6]; Immunoglobulin domain [PF00047.27, score=20.3]} {RNA1509_13217} {RNA1310_2979.1} {RNA815_922.1}

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