TomoSeq data search

Data search

Results for MligTC455_28892

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_28892

179

3.72

Mlig455_007370, Mlig455_049729, Mlig455_052852

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.241

THAP1

Mlig455_007370 {REF} {Length: 5352} {Pfam: THAP domain [PF05485.14, score=56.2]; Transposase protein [PF12017.10, score=33.5]} {Human: ENSG00000131931, THAP1, THAP domain containing 1, [Score=62.4, Expect=2e-10]; ENSG00000176946, THAP4, THAP domain containing 4, [Score=61.2, Expect=3e-09]} {Mouse: ENSMUSG00000026279, Thap4, THAP domain containing 4, [Score=61.2, Expect=2e-09]; ENSMUSG00000037214, Thap1, THAP domain containing, apoptosis associated protein 1, [Score=59.7, Expect=8e-10]} {RNA1509_24900} {RNA1310_10644} {RNA815_459.1}

Mlig455_049729 {REF} {Length: 3345} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=32.8]} {Celegans: WBGene00007723, C25F9.2, [Score=80.1, Expect=1e-17]} {RNA1509_17816} {RNA1310_26499} {RNA815_694.1}

Mlig455_052852 {REF} {Length: 2259} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=31.0]} {Celegans: WBGene00007723, C25F9.2, [Score=82.0, Expect=3e-17]} {RNA1509_52872} {RNA1310_37355} {RNA815_694.2}

Cumulative graph for MligTC455_28892

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-2.642	2.445	0.35330	0.99669
RegionR2	0.662	2.445	0.39988	0.79414
RegionR3	0.077	2.445	0.89857	1.00000
RegionR4	0.169	2.445	0.81366	1.00000
RegionR5	-0.195	2.445	0.81971	1.00000
RegionR6	0.489	2.445	0.46599	1.00000
RegionR7	0.73	2.445	0.39501	1.00000
RegionR8	0.709	2.445	0.50995	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.133	2.445	0.80125	1.00000
RegenerationR2	-0.677	2.445	0.20131	0.64752
RegenerationR3	-0.045	2.445	0.94133	1.00000
RegenerationR4	-0.396	2.445	0.50888	0.87392
RegenerationR5	-0.166	2.445	0.76169	0.97604
RegenerationR6	-0.188	2.445	0.75665	0.95546
RegenerationBL	0.459	2.445	0.52493	0.88571
RegenerationTP	-0.462	2.445	0.60056	0.96119

Genes with expression patterns similar to MligTC455_28892

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_28892	179	3.72	Mlig455_007370, Mlig455_049729, Mlig455_052852	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-2.241	THAP1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_007370 {REF} {Length: 5352} {Pfam: THAP domain [PF05485.14, score=56.2]; Transposase protein [PF12017.10, score=33.5]} {Human: ENSG00000131931, THAP1, THAP domain containing 1, [Score=62.4, Expect=2e-10]; ENSG00000176946, THAP4, THAP domain containing 4, [Score=61.2, Expect=3e-09]} {Mouse: ENSMUSG00000026279, Thap4, THAP domain containing 4, [Score=61.2, Expect=2e-09]; ENSMUSG00000037214, Thap1, THAP domain containing, apoptosis associated protein 1, [Score=59.7, Expect=8e-10]} {RNA1509_24900} {RNA1310_10644} {RNA815_459.1} Mlig455_049729 {REF} {Length: 3345} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=32.8]} {Celegans: WBGene00007723, C25F9.2, [Score=80.1, Expect=1e-17]} {RNA1509_17816} {RNA1310_26499} {RNA815_694.1} Mlig455_052852 {REF} {Length: 2259} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=31.0]} {Celegans: WBGene00007723, C25F9.2, [Score=82.0, Expect=3e-17]} {RNA1509_52872} {RNA1310_37355} {RNA815_694.2}
2.	MligTC455_28891	200	4.16	Mlig455_042150, Mlig455_046485	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.423		3.629	0.842	0.977	-	0.877	-	0.933	Mlig455_042150 {REF} {Length: 6569} {TRANSSPLICED} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=136.9]} {Celegans: WBGene00007723, C25F9.2, [Score=337, Expect=5e-100]} {RNA1509_52872} {RNA1310_2280.1} {RNA815_694.2} Mlig455_046485 {REF} {Length: 7166} {TRANSSPLICED} {Pfam: DNA polymerase type B, organellar and viral [PF03175.15, score=136.4]} {Celegans: WBGene00007723, C25F9.2, [RH, Score=383, Expect=3e-111]} {RNA1509_4648} {RNA1310_2280.1} {RNA815_694.2}
3.	MligTC455_46006	1171	24.39	Mlig455_003506	Neo: - Age: logFC(26M/2M)=-0.356 Regeneration-upregulated BL: 1.838 Regeneration-enriched BL: 1.838	RBMS3	1.754	-	-	0.799	-	-	0.955	Mlig455_003506 {REF} {Length: 4692} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=48.0]} {Human: ENSG00000144642, RBMS3, RNA binding motif single stranded interacting protein 3, [RH, Score=114, Expect=3e-27]; ENSG00000153250, RBMS1, RNA binding motif single stranded interacting protein 1, [RH, Score=112, Expect=1e-26]} {Mouse: ENSMUSG00000026970, Rbms1, RNA binding motif, single stranded interacting protein 1, [RH, Score=115, Expect=8e-28]; ENSMUSG00000039607, Rbms3, RNA binding motif, single stranded interacting protein, [RH, Score=113, Expect=5e-27]} {Dmel: FBgn0052423, shep, alan shepard, [Score=100, Expect=4e-22]} {Celegans: WBGene00006331, sup-26, SUPpressor, [RH, Score=118, Expect=9e-29]} {Smed: dd_Smed_v6_2612_0_1, dd_Smed_v6_2612_0_1, [RH, Score=109, Expect=2e-25]} {RNA1509_11819, RNA1509_18229, RNA1509_24197, RNA1509_30966, RNA1509_34693} {RNA1310_2231, RNA1509_11819, RNA1509_18229, RNA1509_24197, RNA1509_30966, RNA1509_34693} {RNA1509_11819, RNA1509_18229, RNA1509_24197, RNA1509_30966, RNA1509_34693, RNA815_12809}
4.	MligTC455_48258	34	0.71	Mlig455_020899	Neo: - Age: Down-Down-Up	VAV3	0.981	-	-	-	-	-	0.981	Mlig455_020899 {REF} {Length: 3371} {Pfam: Calponin homology (CH) domain [PF00307.33, score=42.1]; RhoGEF domain [PF00621.22, score=39.9]; SH2 domain [PF00017.26, score=27.7]; CAMSAP CH domain [PF11971.10, score=19.0]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=18.8]} {Human: ENSG00000134215, VAV3, vav guanine nucleotide exchange factor 3, [Score=142, Expect=3e-34]; ENSG00000160293, VAV2, vav guanine nucleotide exchange factor 2, [Score=141, Expect=5e-34]} {Mouse: ENSMUSG00000009621, Vav2, vav 2 oncogene, [Score=140, Expect=6e-34]; ENSMUSG00000033721, Vav3, vav 3 oncogene, [Score=139, Expect=1e-33]} {Celegans: WBGene00006887, vav-1, [Score=109, Expect=4e-24]} {Smed: dd_Smed_v6_6109_0_1, dd_Smed_v6_6109_0_1, [Score=96.7, Expect=2e-20]} {RNA1310_24185} {RNA815_29420}
5.	MligTC455_50313	330	6.87	Mlig455_057017	Neo: - Age: Down-Down-Up Regeneration-upregulated BL: 4.082 Regeneration-enriched BL: 4.082		0.962	-	-	-	-	-	0.962	Mlig455_057017 {REF} {Length: 4142} {Pfam: PDZ domain [PF00595.26, score=37.7]; RhoGEF domain [PF00621.22, score=37.6]; PDZ domain [PF17820.3, score=31.9]} {Dmel: FBgn0020278, loco, locomotion defects, [Score=55.1, Expect=3e-07]} {Smed: dd_Smed_v6_17732_0_1, dd_Smed_v6_17732_0_1, [Score=58.2, Expect=1e-08]} {RNA1509_36767} {RNA1310_8233.1, RNA1509_36767} {RNA1509_36767, RNA815_33894}
6.	MligTC455_41281	2076	43.26	Mlig455_035038, Mlig455_035047	Neo: - Age: Down-Up-Up		0.96	-	-	-	0.960	-	-	Mlig455_035038 {REF} {Length: 1566} {TRANSSPLICED} {Pfam: Universal stress protein family [PF00582.28, score=69.6]} {Smed: dd_Smed_v6_9938_0_1, dd_Smed_v6_9938_0_1, [Score=85.9, Expect=4e-21]} {RNA1509_11926} {RNA1310_25258} {RNA815_10392} Mlig455_035047 {REF} {Length: 1565} {TRANSSPLICED} {Pfam: Universal stress protein family [PF00582.28, score=69.6]} {Smed: dd_Smed_v6_9938_0_1, dd_Smed_v6_9938_0_1, [Score=85.9, Expect=4e-21]} {RNA1509_11926, RNA1509_35326} {RNA1310_25258, RNA1509_11926, RNA1509_35326} {RNA1509_11926, RNA1509_35326, RNA815_10392}
7.	MligTC455_16220	109	2.26	Mlig455_033861	Neo: - Age: -		0.958	-	-	-	-	-	0.958	Mlig455_033861 {REF} {Length: 1348} {RNA1509_56316} {RNA1310_29964} {RNA815_15923}
8.	MligTC455_17525	246	5.13	Mlig455_059098	Neo: - Age: Down-Up-Down		0.956	-	-	-	-	0.956	-	Mlig455_059098 {REF} {Length: 2180} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=86.4]} {Celegans: WBGene00006832, unc-105, Degenerin-like protein unc-105, [Score=50.4, Expect=2e-06]} {Smed: dd_Smed_v6_12878_0_1, dd_Smed_v6_12878_0_1, [Score=56.6, Expect=2e-08]} {RNA1509_35331} {RNA1310_2795.1} {RNA815_4169}
9.	MligTC455_16586	410	8.55	Mlig455_059353, Mlig455_065581	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.614		0.955	-	-	-	-	-	0.955	Mlig455_059353 {REF} {Length: 2125} {TRANSSPLICED} {RNA1310_49327} Mlig455_065581 {REF} {Length: 2122} {TRANSSPLICED} {RNA1310_49327}
10.	MligTC455_29589	920	19.16	Mlig455_039499	Neo: Int S/G2/M Age: Down-Up-Up, logFC(26M/2M)=0.270	RSL24D1	0.951	-	-	-	0.951	-	-	Mlig455_039499 {REF} {Length: 1272} {TRANSSPLICED} {Pfam: Ribosomal protein L24e [PF01246.22, score=107.3]} {Human: ENSG00000137876, RSL24D1, ribosomal L24 domain containing 1, [RH, Score=176, Expect=4e-56]} {Mouse: ENSMUSG00000032215, Rsl24d1, ribosomal L24 domain containing 1, [RH, Score=177, Expect=2e-56]} {Dmel: FBgn0037899, RpL24-like, Ribosomal protein L24-like, [RH, Score=158, Expect=7e-49]} {Celegans: WBGene00004437, rpl-24.2, Probable ribosome biogenesis protein RLP24, [RH, Score=148, Expect=2e-45]} {Smed: dd_Smed_v6_1059_0_1, dd_Smed_v6_1059_0_1, [RH, Score=155, Expect=6e-48]} {RNA1509_14704, RNA1509_21561, RNA1509_36438, RNA1509_4223, RNA1509_54621} {RNA1310_39151, RNA1509_14704, RNA1509_21561, RNA1509_36438, RNA1509_4223, RNA1509_54621} {RNA1509_14704, RNA1509_21561, RNA1509_36438, RNA1509_4223, RNA1509_54621, RNA815_14299.1}
11.	MligTC455_19878	674	14.04	Mlig455_025244, Mlig455_025266, Mlig455_025621	Neo: - Age: Up-Down-Up Region-enriched R6: 4.115/0.00000 Region-enriched R7: 3.098/0.01198 Regeneration-upregulated BL: 3.728 Regeneration-enriched BL: 3.728	ASCL4	0.95	-	-	-	-	-	0.950	Mlig455_025244 {REF} {Length: 2889} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=59.3]} {Human: ENSG00000187855, ASCL4, achaete-scute family bHLH transcription factor 4, [RH, Score=68.2, Expect=3e-13]; ENSG00000232237, ASCL5, achaete-scute family bHLH transcription factor 5, [RH, Score=66.2, Expect=2e-12]} {Mouse: ENSMUSG00000035951, Ascl3, achaete-scute family bHLH transcription factor 3, [RH, Score=67.0, Expect=5e-13]; ENSMUSG00000097918, Ascl5, achaete-scute family bHLH transcription factor 5, [RH, Score=66.6, Expect=1e-12]} {Dmel: FBgn0000022, ac, achaete, [RH, Score=66.2, Expect=1e-12]} {Celegans: WBGene00001952, hlh-6, Helix-loop-helix protein 6, [Score=63.2, Expect=2e-11]} {Smed: dd_Smed_v6_1854_0_1, dd_Smed_v6_1854_0_1, [RH, Score=80.9, Expect=8e-19]} {RNA1509_60112} {RNA1310_16083} {RNA815_25636.1} Mlig455_025266 {REF} {Length: 1966} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=59.5]} {Human: ENSG00000187855, ASCL4, achaete-scute family bHLH transcription factor 4, [RH, Score=67.8, Expect=4e-13]; ENSG00000232237, ASCL5, achaete-scute family bHLH transcription factor 5, [RH, Score=66.2, Expect=3e-12]} {Mouse: ENSMUSG00000035951, Ascl3, achaete-scute family bHLH transcription factor 3, [RH, Score=67.0, Expect=6e-13]; ENSMUSG00000097918, Ascl5, achaete-scute family bHLH transcription factor 5, [RH, Score=66.2, Expect=1e-12]} {Dmel: FBgn0000022, ac, achaete, [RH, Score=66.2, Expect=1e-12]} {Celegans: WBGene00001952, hlh-6, Helix-loop-helix protein 6, [Score=61.6, Expect=8e-11]} {Smed: dd_Smed_v6_1854_0_1, dd_Smed_v6_1854_0_1, [RH, Score=79.3, Expect=3e-18]} {RNA1509_60112} {RNA1310_16083} {RNA815_25636.1} Mlig455_025621 {REF} {Length: 1718} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=59.1]} {Human: ENSG00000187855, ASCL4, achaete-scute family bHLH transcription factor 4, [RH, Score=67.8, Expect=4e-13]; ENSG00000232237, ASCL5, achaete-scute family bHLH transcription factor 5, [RH, Score=66.2, Expect=3e-12]} {Mouse: ENSMUSG00000035951, Ascl3, achaete-scute family bHLH transcription factor 3, [RH, Score=66.6, Expect=6e-13]; ENSMUSG00000097918, Ascl5, achaete-scute family bHLH transcription factor 5, [RH, Score=66.2, Expect=1e-12]} {Dmel: FBgn0000022, ac, achaete, [RH, Score=66.2, Expect=1e-12]} {Celegans: WBGene00001952, hlh-6, Helix-loop-helix protein 6, [Score=62.8, Expect=3e-11]} {Smed: dd_Smed_v6_1854_0_1, dd_Smed_v6_1854_0_1, [RH, Score=79.3, Expect=3e-18]} {RNA1509_60112} {RNA1310_20032, RNA1509_60112} {RNA1509_60112, RNA815_25636.1}

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