TomoSeq data search

Data search

Results for MligTC455_29172

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_29172

136

2.84

Mlig455_018254, Mlig455_018295

Neo: Irradiation

Age: Down-Up-Up

Region-enriched R5: 2.277/0.00377

Mlig455_018254 {REF} {Length: 1104} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=23.4]} {RNA1509_57500} {RNA1310_28903} {RNA815_17993}

Mlig455_018295 {REF} {Length: 1827} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=23.7]} {RNA1509_57500} {RNA1310_32124} {RNA815_17993}

Cumulative graph for MligTC455_29172

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.188	2.445	0.89414	1.00000
RegionR2	0.989	2.445	0.31956	0.71102
RegionR3	0.411	2.445	0.59571	1.00000
RegionR4	0.959	2.445	0.25835	0.56017
RegionR5	2.277	2.445	0.00028	0.00377
RegionR6	0.698	2.445	0.39583	0.96906
RegionR7	-3.466	2.445	0.15346	0.72570
RegionR8	-2.055	2.445	0.46726	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-4.555	2.445	0.46984	1.00000
RegenerationR2	-0.082	2.445	0.90591	1.00000
RegenerationR3	-0.692	2.445	0.38913	0.79551
RegenerationR4	-0.418	2.445	0.54694	0.89118
RegenerationR5	0.091	2.445	0.86377	1.00000
RegenerationR6	1.079	2.445	0.11292	0.41404
RegenerationBL	1.468	2.445	0.35399	0.72196
RegenerationTP	3.007	2.445	0.11918	0.52766

Genes with expression patterns similar to MligTC455_29172

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_29172	136	2.84	Mlig455_018254, Mlig455_018295	Neo: Irradiation Age: Down-Up-Up Region-enriched R5: 2.277/0.00377		6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_018254 {REF} {Length: 1104} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=23.4]} {RNA1509_57500} {RNA1310_28903} {RNA815_17993} Mlig455_018295 {REF} {Length: 1827} {TRANSSPLICED} {Pfam: Leucine Rich repeat [PF13516.8, score=23.7]} {RNA1509_57500} {RNA1310_32124} {RNA815_17993}
2.	MligTC455_25326	128	2.67	Mlig455_059765	Neo: - Age: -	ZDHHC24	1.801	-	-	-	-	0.959	0.842	Mlig455_059765 {REF} {Length: 2484} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=92.4]} {Human: ENSG00000174165, ZDHHC24, zinc finger DHHC-type containing 24, [RH, Score=119, Expect=4e-31]} {Mouse: ENSMUSG00000006463, Zdhhc24, zinc finger, DHHC domain containing 24, [RH, Score=114, Expect=1e-29]} {Dmel: FBgn0034729, CG10344, [RH, Score=124, Expect=2e-33]} {Celegans: WBGene00008606, dhhc-1, Palmitoyltransferase, [RH, Score=104, Expect=7e-26]} {Smed: dd_Smed_v6_14924_0_1, dd_Smed_v6_14924_0_1, [RH, Score=160, Expect=1e-47]} {RNA1509_59014} {RNA1310_6105.1} {RNA815_12917}
3.	MligTC455_33374	91	1.91	Mlig455_030987, Mlig455_069438	Neo: - Age: - Region-enriched R5: 5.477/0.00100		1.695	-	-	-	-	0.737	0.958	Mlig455_030987 {REF} {Length: 1049} Mlig455_069438 {REF} {Length: 1047}
4.	MligTC455_20831	27	0.57	Mlig455_054079	Neo: - Age: -	ASIC5	0.977	-	-	-	-	0.977	-	Mlig455_054079 {REF} {Length: 2500} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=136.4]} {Human: ENSG00000256394, ASIC5, acid sensing ion channel subunit family member 5, [Score=58.2, Expect=2e-08]; ENSG00000262505, AC093830.1, acid sensing ion channel subunit family member 5, [Score=57.4, Expect=3e-08]} {Mouse: ENSMUSG00000028008, Asic5, acid-sensing (proton-gated) ion channel family member 5, [Score=57.0, Expect=3e-08]; ENSMUSG00000023017, Asic1, acid-sensing (proton-gated) ion channel 1, [Score=54.7, Expect=2e-07]} {Celegans: WBGene00012137, asic-2, Degenerin-like protein asic-2, [Score=60.1, Expect=2e-09]} {Smed: dd_Smed_v6_13943_0_1, dd_Smed_v6_13943_0_1, [Score=65.1, Expect=4e-11]} {RNA1509_35422} {RNA1310_9082.2} {RNA815_48221}
5.	MligTC455_25327	173	3.59	Mlig455_054998, Mlig455_070312	Neo: - Age: -	ZDHHC24	0.968	-	-	-	-	-	0.968	Mlig455_054998 {REF} {Length: 2567} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=92.4]} {Human: ENSG00000174165, ZDHHC24, zinc finger DHHC-type containing 24, [RH, Score=119, Expect=4e-31]} {Mouse: ENSMUSG00000006463, Zdhhc24, zinc finger, DHHC domain containing 24, [RH, Score=114, Expect=1e-29]} {Dmel: FBgn0034729, CG10344, [RH, Score=124, Expect=2e-33]} {Celegans: WBGene00008606, dhhc-1, Palmitoyltransferase, [RH, Score=104, Expect=7e-26]} {Smed: dd_Smed_v6_14924_0_1, dd_Smed_v6_14924_0_1, [RH, Score=160, Expect=1e-47]} {RNA1509_59014} {RNA1310_6105.1, RNA1509_59014} {RNA1509_59014, RNA815_12917} Mlig455_070312 {REF} {Length: 1965} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=92.6]} {Human: ENSG00000174165, ZDHHC24, zinc finger DHHC-type containing 24, [RH, Score=117, Expect=7e-31]} {Mouse: ENSMUSG00000006463, Zdhhc24, zinc finger, DHHC domain containing 24, [RH, Score=113, Expect=2e-29]} {Dmel: FBgn0034729, CG10344, [RH, Score=122, Expect=4e-33]} {Celegans: WBGene00008606, dhhc-1, Palmitoyltransferase, [RH, Score=103, Expect=6e-26]} {Smed: dd_Smed_v6_14924_0_1, dd_Smed_v6_14924_0_1, [RH, Score=159, Expect=2e-47]} {RNA1509_59014} {RNA1310_6105.2} {RNA815_12917}
6.	MligTC455_23619	292	6.09	Mlig455_015174	Neo: - Age: -	NUBP1	0.966	-	-	0.966	-	-	-	Mlig455_015174 {REF} {Length: 6201} {TRANSSPLICED} {Pfam: NUBPL iron-transfer P-loop NTPase [PF10609.11, score=294.3]; mbt repeat [PF02820.20, score=108.4]; SLED domain [PF12140.10, score=86.1]; CobQ/CobB/MinD/ParA nucleotide binding domain [PF01656.25, score=27.7]; AAA domain [PF13614.8, score=21.0]; AAA domain [PF13500.8, score=18.7]} {Human: ENSG00000103274, NUBP1, nucleotide binding protein 1, [RH, Score=378, Expect=2e-121]} {Mouse: ENSMUSG00000022503, Nubp1, nucleotide binding protein 1, [RH, Score=383, Expect=2e-123]} {Dmel: FBgn0032597, CG17904, [RH, Score=315, Expect=3e-98]} {Celegans: WBGene00008664, nubp-1, Cytosolic Fe-S cluster assembly factor NUBP1 homolog, [RH, Score=365, Expect=6e-117]} {Smed: dd_Smed_v6_3014_0_1, dd_Smed_v6_3014_0_1, [RH, Score=330, Expect=1e-103]} {RNA1509_11523} {RNA1310_4982.2} {RNA815_1974}
7.	MligTC455_21478	61	1.27	Mlig455_044576	Neo: Germline Age: Up-Up-Down Region-enriched R4: 4.287/0.01616		0.96	-	-	-	-	-	0.960	Mlig455_044576 {REF} {Length: 4273} {RNA1509_33922} {RNA1310_8878} {RNA815_5630}
8.	MligTC455_52037	158	3.3	Mlig455_004185	Neo: - Age: -	PIAS2	0.953	-	-	-	-	0.953	-	Mlig455_004185 {REF} {Length: 4387} {TRANSSPLICED} {Pfam: MIZ/SP-RING zinc finger [PF02891.22, score=65.3]; PINIT domain [PF14324.8, score=42.7]; Zinc-finger of the MIZ type in Nse subunit [PF11789.10, score=21.9]} {Human: ENSG00000078043, PIAS2, protein inhibitor of activated STAT 2, [Score=93.2, Expect=4e-19]} {Mouse: ENSMUSG00000025423, Pias2, protein inhibitor of activated STAT 2, [Score=93.6, Expect=2e-19]} {Dmel: FBgn0003612, Su(var)2-10, Suppressor of variegation 2-10, [Score=105, Expect=3e-23]} {Celegans: WBGene00001574, gei-17, E3 SUMO-protein ligase gei-17, [Score=87.4, Expect=1e-17]} {Smed: dd_Smed_v6_10185_0_1, dd_Smed_v6_10185_0_1, [Score=99.8, Expect=2e-21]} {RNA1509_24763, RNA1509_34035, RNA1509_42955} {RNA1310_5130, RNA1509_24763, RNA1509_34035} {RNA1509_24763, RNA1509_34035, RNA815_10497}
9.	MligTC455_46258	612	12.74	Mlig455_000592, Mlig455_069015	Neo: - Age: - Region-enriched R5: 2.081/0.00360		0.951	-	-	-	-	-	0.951	Mlig455_000592 {REF} {Length: 2003} {TRANSSPLICED} {Pfam: Jumping translocation breakpoint protein (JTB) [PF05439.14, score=29.8]} {Smed: dd_Smed_v6_8352_0_1, dd_Smed_v6_8352_0_1, [RH, Score=50.8, Expect=2e-08]} {RNA1509_33082, RNA1509_49082} {RNA1310_34573.1, RNA1509_49082} {RNA1509_49082, RNA815_15763.1} Mlig455_069015 {REF} {Length: 2002} {TRANSSPLICED} {Pfam: Jumping translocation breakpoint protein (JTB) [PF05439.14, score=29.9]} {Smed: dd_Smed_v6_8352_0_1, dd_Smed_v6_8352_0_1, [RH, Score=50.8, Expect=3e-08]} {RNA1509_33082} {RNA1310_34573.1} {RNA815_15763.1}

Berezikov Lab - 2020-2021 © ERIBA