TomoSeq data search

Data search

Results for MligTC455_29254

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_29254	1578	32.88	Mlig455_004002, Mlig455_004085	Neo: - Age: Down-Up-Up Region-enriched R4: 1.170/0.04331 Region-enriched R5: 1.025/0.01700	MAP2K4	Mlig455_004002 {REF} {Length: 4215} {Pfam: Protein kinase domain [PF00069.27, score=182.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=134.3]; Kinase-like [PF14531.8, score=29.5]; ABC1 atypical kinase-like domain [PF03109.18, score=21.1]; Seadornavirus VP7 [PF07387.13, score=19.1]} {Human: ENSG00000065559, MAP2K4, mitogen-activated protein kinase kinase 4, [RH, Score=412, Expect=5e-143]} {Mouse: ENSMUSG00000033352, Map2k4, mitogen-activated protein kinase kinase 4, [RH, Score=413, Expect=1e-143]} {Dmel: FBgn0024326, Mkk4, MAP kinase kinase 4, [RH, Score=374, Expect=5e-128]} {Celegans: WBGene00004758, sek-1, Dual specificity mitogen-activated protein kinase kinase sek-1, [RH, Score=297, Expect=4e-99]} {Smed: dd_Smed_v6_3173_0_1, dd_Smed_v6_3173_0_1, [RH, Score=376, Expect=9e-130]} {RNA1509_10335} {RNA1310_8052} {RNA815_6872.2} Mlig455_004085 {REF} {Length: 2848} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=182.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=134.3]; Kinase-like [PF14531.8, score=29.5]; ABC1 atypical kinase-like domain [PF03109.18, score=21.1]; Seadornavirus VP7 [PF07387.13, score=19.1]} {Human: ENSG00000065559, MAP2K4, mitogen-activated protein kinase kinase 4, [RH, Score=412, Expect=5e-143]} {Mouse: ENSMUSG00000033352, Map2k4, mitogen-activated protein kinase kinase 4, [RH, Score=413, Expect=1e-143]} {Dmel: FBgn0024326, Mkk4, MAP kinase kinase 4, [RH, Score=374, Expect=5e-128]} {Celegans: WBGene00004758, sek-1, Dual specificity mitogen-activated protein kinase kinase sek-1, [RH, Score=297, Expect=4e-99]} {Smed: dd_Smed_v6_3173_0_1, dd_Smed_v6_3173_0_1, [RH, Score=376, Expect=9e-130]} {RNA1509_10335} {RNA1310_8052} {RNA815_6872.2}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_29254

1578

32.88

Mlig455_004002, Mlig455_004085

Neo: -

Age: Down-Up-Up

Region-enriched R4: 1.170/0.04331
Region-enriched R5: 1.025/0.01700

MAP2K4

Mlig455_004002 {REF} {Length: 4215} {Pfam: Protein kinase domain [PF00069.27, score=182.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=134.3]; Kinase-like [PF14531.8, score=29.5]; ABC1 atypical kinase-like domain [PF03109.18, score=21.1]; Seadornavirus VP7 [PF07387.13, score=19.1]} {Human: ENSG00000065559, MAP2K4, mitogen-activated protein kinase kinase 4, [RH, Score=412, Expect=5e-143]} {Mouse: ENSMUSG00000033352, Map2k4, mitogen-activated protein kinase kinase 4, [RH, Score=413, Expect=1e-143]} {Dmel: FBgn0024326, Mkk4, MAP kinase kinase 4, [RH, Score=374, Expect=5e-128]} {Celegans: WBGene00004758, sek-1, Dual specificity mitogen-activated protein kinase kinase sek-1, [RH, Score=297, Expect=4e-99]} {Smed: dd_Smed_v6_3173_0_1, dd_Smed_v6_3173_0_1, [RH, Score=376, Expect=9e-130]} {RNA1509_10335} {RNA1310_8052} {RNA815_6872.2}

Mlig455_004085 {REF} {Length: 2848} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=182.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=134.3]; Kinase-like [PF14531.8, score=29.5]; ABC1 atypical kinase-like domain [PF03109.18, score=21.1]; Seadornavirus VP7 [PF07387.13, score=19.1]} {Human: ENSG00000065559, MAP2K4, mitogen-activated protein kinase kinase 4, [RH, Score=412, Expect=5e-143]} {Mouse: ENSMUSG00000033352, Map2k4, mitogen-activated protein kinase kinase 4, [RH, Score=413, Expect=1e-143]} {Dmel: FBgn0024326, Mkk4, MAP kinase kinase 4, [RH, Score=374, Expect=5e-128]} {Celegans: WBGene00004758, sek-1, Dual specificity mitogen-activated protein kinase kinase sek-1, [RH, Score=297, Expect=4e-99]} {Smed: dd_Smed_v6_3173_0_1, dd_Smed_v6_3173_0_1, [RH, Score=376, Expect=9e-130]} {RNA1509_10335} {RNA1310_8052} {RNA815_6872.2}

Cumulative graph for MligTC455_29254

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-2.627	5.214	0.02247	0.40657
RegionR2	0.155	5.214	0.71059	1.00000
RegionR3	0.389	5.214	0.27907	0.82283
RegionR4	1.17	5.214	0.00626	0.04331
RegionR5	1.025	5.214	0.00194	0.01700
RegionR6	0.637	5.214	0.07455	0.50729
RegionR7	0.495	5.214	0.24988	0.87612
RegionR8	-1.245	5.214	0.06436	0.49163

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	1.921	5.214	0.19408	0.93244
RegenerationR2	0.004	5.214	0.99077	1.00000
RegenerationR3	0.458	5.214	0.22078	0.65686
RegenerationR4	0.218	5.214	0.57615	0.90425
RegenerationR5	0.396	5.214	0.25770	0.68946
RegenerationR6	0.033	5.214	0.92984	1.00000
RegenerationBL	0.152	5.214	0.72257	1.00000
RegenerationTP	1.016	5.214	0.03180	0.29940

Genes with expression patterns similar to MligTC455_29254

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_29254	1578	32.88	Mlig455_004002, Mlig455_004085	Neo: - Age: Down-Up-Up Region-enriched R4: 1.170/0.04331 Region-enriched R5: 1.025/0.01700	MAP2K4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_004002 {REF} {Length: 4215} {Pfam: Protein kinase domain [PF00069.27, score=182.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=134.3]; Kinase-like [PF14531.8, score=29.5]; ABC1 atypical kinase-like domain [PF03109.18, score=21.1]; Seadornavirus VP7 [PF07387.13, score=19.1]} {Human: ENSG00000065559, MAP2K4, mitogen-activated protein kinase kinase 4, [RH, Score=412, Expect=5e-143]} {Mouse: ENSMUSG00000033352, Map2k4, mitogen-activated protein kinase kinase 4, [RH, Score=413, Expect=1e-143]} {Dmel: FBgn0024326, Mkk4, MAP kinase kinase 4, [RH, Score=374, Expect=5e-128]} {Celegans: WBGene00004758, sek-1, Dual specificity mitogen-activated protein kinase kinase sek-1, [RH, Score=297, Expect=4e-99]} {Smed: dd_Smed_v6_3173_0_1, dd_Smed_v6_3173_0_1, [RH, Score=376, Expect=9e-130]} {RNA1509_10335} {RNA1310_8052} {RNA815_6872.2} Mlig455_004085 {REF} {Length: 2848} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=182.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=134.3]; Kinase-like [PF14531.8, score=29.5]; ABC1 atypical kinase-like domain [PF03109.18, score=21.1]; Seadornavirus VP7 [PF07387.13, score=19.1]} {Human: ENSG00000065559, MAP2K4, mitogen-activated protein kinase kinase 4, [RH, Score=412, Expect=5e-143]} {Mouse: ENSMUSG00000033352, Map2k4, mitogen-activated protein kinase kinase 4, [RH, Score=413, Expect=1e-143]} {Dmel: FBgn0024326, Mkk4, MAP kinase kinase 4, [RH, Score=374, Expect=5e-128]} {Celegans: WBGene00004758, sek-1, Dual specificity mitogen-activated protein kinase kinase sek-1, [RH, Score=297, Expect=4e-99]} {Smed: dd_Smed_v6_3173_0_1, dd_Smed_v6_3173_0_1, [RH, Score=376, Expect=9e-130]} {RNA1509_10335} {RNA1310_8052} {RNA815_6872.2}
2.	MligTC455_36756	2477	51.61	Mlig455_055041, Mlig455_055059	Neo: - Age: -	SARS	0.957	-	-	0.957	-	-	-	Mlig455_055041 {REF} {Length: 2390} {Human: ENSG00000031698, SARS, seryl-tRNA synthetase, [Score=84.3, Expect=3e-19]} {Mouse: ENSMUSG00000068739, Sars, seryl-aminoacyl-tRNA synthetase, [Score=85.5, Expect=8e-20]} {Dmel: FBgn0031497, SerRS, Seryl-tRNA synthetase, [Score=87.4, Expect=1e-20]} {Celegans: WBGene00005663, sars-1, Probable serine--tRNA ligase, cytoplasmic, [Score=90.5, Expect=6e-22]} {Smed: dd_Smed_v6_2956_0_1, dd_Smed_v6_2956_0_1, [Score=75.5, Expect=8e-17]} {RNA1509_2990} {RNA1310_45178.1} {RNA815_22173} Mlig455_055059 {REF} {Length: 3131} {Pfam: tRNA synthetase class II core domain (G, H, P, S and T) [PF00587.27, score=125.4]; Seryl-tRNA synthetase N-terminal domain [PF02403.24, score=65.3]} {Human: ENSG00000031698, SARS, seryl-tRNA synthetase, [RH, Score=577, Expect=0.0]} {Mouse: ENSMUSG00000068739, Sars, seryl-aminoacyl-tRNA synthetase, [RH, Score=587, Expect=0.0]} {Dmel: FBgn0031497, SerRS, Seryl-tRNA synthetase, [RH, Score=578, Expect=0.0]} {Celegans: WBGene00005663, sars-1, Probable serine--tRNA ligase, cytoplasmic, [RH, Score=615, Expect=0.0]} {Smed: dd_Smed_v6_2956_0_1, dd_Smed_v6_2956_0_1, [RH, Score=571, Expect=0.0]} {RNA1509_10512, RNA1509_11700, RNA1509_23621, RNA1509_2990, RNA1509_56294, RNA1509_60051} {RNA1310_8506.2, RNA1509_10512, RNA1509_11700, RNA1509_23621, RNA1509_2990, RNA1509_56294, RNA1509_60051} {RNA1509_10512, RNA1509_11700, RNA1509_23621, RNA1509_2990, RNA1509_56294, RNA1509_60051, RNA815_6019.1}
3.	MligTC455_40095	1262	26.3	Mlig455_033090	Neo: - Age: logFC(26M/2M)=-0.702 Region-enriched R4: 1.663/0.00275 Region-enriched R6: 1.261/0.01807	LITAF	0.952	-	-	-	0.952	-	-	Mlig455_033090 {REF} {Length: 1159} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=83.7]} {Human: ENSG00000189067, LITAF, lipopolysaccharide induced TNF factor, [Score=70.9, Expect=1e-15]} {Mouse: ENSMUSG00000022500, Litaf, LPS-induced TN factor, [Score=72.8, Expect=2e-16]} {Dmel: FBgn0052280, CG32280, [Score=67.4, Expect=7e-15]} {Celegans: WBGene00017513, F16F9.1, [RH, Score=67.8, Expect=8e-15]} {Smed: dd_Smed_v6_2503_0_1, dd_Smed_v6_2503_0_1, [Score=65.1, Expect=2e-14]} {RNA1509_24760} {RNA1310_13198, RNA1509_24760} {RNA1509_24760, RNA815_16167.2}
4.	MligTC455_39637	541	11.27	Mlig455_022879	Neo: - Age: - Region-enriched R4: 1.265/0.02474 Region-enriched R5: 1.155/0.00401	ZDHHC6	0.95	-	-	-	0.950	-	-	Mlig455_022879 {REF} {Length: 3261} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=115.3]} {Human: ENSG00000023041, ZDHHC6, zinc finger DHHC-type containing 6, [RH, Score=305, Expect=7e-100]} {Mouse: ENSMUSG00000024982, Zdhhc6, zinc finger, DHHC domain containing 6, [RH, Score=296, Expect=2e-96]} {Dmel: FBgn0038039, CG5196, [RH, Score=285, Expect=3e-92]} {Celegans: WBGene00010892, dhhc-6, Palmitoyltransferase, [RH, Score=237, Expect=1e-73]} {Smed: dd_Smed_v6_3462_0_1, dd_Smed_v6_3462_0_1, [RH, Score=343, Expect=7e-115]} {RNA1509_13127, RNA1509_43821, RNA1509_50085} {RNA1310_21163, RNA1509_43821, RNA1509_50085} {RNA1509_43821, RNA1509_50085, RNA815_8946}