M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_39637

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_39637 541 11.27 Mlig455_022879

Neo: -

Age: -

Region-enriched R4: 1.265/0.02474
Region-enriched R5: 1.155/0.00401

 ZDHHC6 Mlig455_022879 {REF} {Length: 3261} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=115.3]} {Human: ENSG00000023041, ZDHHC6, zinc finger DHHC-type containing 6, [RH, Score=305, Expect=7e-100]} {Mouse: ENSMUSG00000024982, Zdhhc6, zinc finger, DHHC domain containing 6, [RH, Score=296, Expect=2e-96]} {Dmel: FBgn0038039, CG5196, [RH, Score=285, Expect=3e-92]} {Celegans: WBGene00010892, dhhc-6, Palmitoyltransferase, [RH, Score=237, Expect=1e-73]} {Smed: dd_Smed_v6_3462_0_1, dd_Smed_v6_3462_0_1, [RH, Score=343, Expect=7e-115]} {RNA1509_13127, RNA1509_43821, RNA1509_50085} {RNA1310_21163, RNA1509_43821, RNA1509_50085} {RNA1509_43821, RNA1509_50085, RNA815_8946}

Cumulative graph for MligTC455_39637

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.622 3.897 0.56778 1.00000
RegionR2 -0.113 3.897 0.82231 1.00000
RegionR3 0.234 3.897 0.53748 1.00000
RegionR4 1.265 3.897 0.00305 0.02474
RegionR5 1.155 3.897 0.00031 0.00401
RegionR6 0.075 3.897 0.84762 1.00000
RegionR7 -0.223 3.897 0.70016 1.00000
RegionR8 -3.014 3.897 0.00273 0.08986

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.977 3.897 0.55385 1.00000
RegenerationR2 0.346 3.897 0.31420 0.75344
RegenerationR3 0.315 3.897 0.41429 0.81149
RegenerationR4 -0.319 3.897 0.40960 0.82005
RegenerationR5 0.257 3.897 0.42514 0.81455
RegenerationR6 0.211 3.897 0.61652 0.87860
RegenerationBL 1.421 3.897 0.02259 0.16446
RegenerationTP 1.908 3.897 0.00797 0.15026


Genes with expression patterns similar to MligTC455_39637

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_39637 541 11.27 Mlig455_022879

Neo: -

Age: -

Region-enriched R4: 1.265/0.02474
Region-enriched R5: 1.155/0.00401

 ZDHHC6 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_022879 {REF} {Length: 3261} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=115.3]} {Human: ENSG00000023041, ZDHHC6, zinc finger DHHC-type containing 6, [RH, Score=305, Expect=7e-100]} {Mouse: ENSMUSG00000024982, Zdhhc6, zinc finger, DHHC domain containing 6, [RH, Score=296, Expect=2e-96]} {Dmel: FBgn0038039, CG5196, [RH, Score=285, Expect=3e-92]} {Celegans: WBGene00010892, dhhc-6, Palmitoyltransferase, [RH, Score=237, Expect=1e-73]} {Smed: dd_Smed_v6_3462_0_1, dd_Smed_v6_3462_0_1, [RH, Score=343, Expect=7e-115]} {RNA1509_13127, RNA1509_43821, RNA1509_50085} {RNA1310_21163, RNA1509_43821, RNA1509_50085} {RNA1509_43821, RNA1509_50085, RNA815_8946}
2. MligTC455_39638 520 10.84 Mlig455_022897

Neo: -

Age: -

Region-enriched R4: 1.480/0.01113
Region-enriched R5: 1.254/0.00290

 ZDHHC6 5.917 0.987 1.000 1.000 0.997 0.935 0.998 Mlig455_022897 {REF} {Length: 3329} {TRANSSPLICED} {Pfam: DHHC palmitoyltransferase [PF01529.22, score=115.4]} {Human: ENSG00000023041, ZDHHC6, zinc finger DHHC-type containing 6, [RH, Score=303, Expect=3e-99]} {Mouse: ENSMUSG00000024982, Zdhhc6, zinc finger, DHHC domain containing 6, [RH, Score=293, Expect=1e-95]} {Dmel: FBgn0038039, CG5196, [RH, Score=282, Expect=2e-91]} {Celegans: WBGene00010892, dhhc-6, Palmitoyltransferase, [RH, Score=232, Expect=8e-72]} {Smed: dd_Smed_v6_3462_0_1, dd_Smed_v6_3462_0_1, [RH, Score=340, Expect=6e-114]} {RNA1509_13127} {RNA1310_21163} {RNA815_8946}
3. MligTC455_40095 1262 26.3 Mlig455_033090

Neo: -

Age: logFC(26M/2M)=-0.702

Region-enriched R4: 1.663/0.00275
Region-enriched R6: 1.261/0.01807

 LITAF 0.957 - - - 0.957 - - Mlig455_033090 {REF} {Length: 1159} {Pfam: LITAF-like zinc ribbon domain [PF10601.11, score=83.7]} {Human: ENSG00000189067, LITAF, lipopolysaccharide induced TNF factor, [Score=70.9, Expect=1e-15]} {Mouse: ENSMUSG00000022500, Litaf, LPS-induced TN factor, [Score=72.8, Expect=2e-16]} {Dmel: FBgn0052280, CG32280, [Score=67.4, Expect=7e-15]} {Celegans: WBGene00017513, F16F9.1, [RH, Score=67.8, Expect=8e-15]} {Smed: dd_Smed_v6_2503_0_1, dd_Smed_v6_2503_0_1, [Score=65.1, Expect=2e-14]} {RNA1509_24760} {RNA1310_13198, RNA1509_24760} {RNA1509_24760, RNA815_16167.2}
4. MligTC455_29420 848 17.67 Mlig455_038189, Mlig455_038385

Neo: -

Age: -

Region-enriched R4: 1.538/0.01069

 SLC16A12 0.952 - - - - - 0.952

Mlig455_038189 {REF} {Length: 5060} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=69.6]} {Human: ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [Score=116, Expect=1e-26]} {Mouse: ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [Score=113, Expect=8e-26]; ENSMUSG00000032902, Slc16a1, solute carrier family 16 (monocarboxylic acid transporters), member 1, [Score=108, Expect=3e-24]} {Dmel: FBgn0035173, CG13907, [Score=153, Expect=6e-38]} {Celegans: WBGene00003986, mct-4, MonoCarboxylate Transporter family, [Score=147, Expect=4e-36]} {Smed: dd_Smed_v6_10147_0_4, dd_Smed_v6_10147_0_4, [Score=339, Expect=2e-101]} {RNA1509_13262} {RNA1310_18255} {RNA815_14383}

Mlig455_038385 {REF} {Length: 5092} {TRANSSPLICED} {Pfam: Major Facilitator Superfamily [PF07690.18, score=69.2]} {Human: ENSG00000152779, SLC16A12, solute carrier family 16 member 12, [Score=116, Expect=1e-26]} {Mouse: ENSMUSG00000009378, Slc16a12, solute carrier family 16 (monocarboxylic acid transporters), member 12, [Score=113, Expect=7e-26]; ENSMUSG00000032902, Slc16a1, solute carrier family 16 (monocarboxylic acid transporters), member 1, [Score=108, Expect=3e-24]} {Dmel: FBgn0035173, CG13907, [Score=153, Expect=6e-38]} {Celegans: WBGene00003986, mct-4, MonoCarboxylate Transporter family, [Score=147, Expect=4e-36]} {Smed: dd_Smed_v6_10147_0_4, dd_Smed_v6_10147_0_4, [Score=344, Expect=3e-103]} {RNA1509_13262} {RNA1310_18255, RNA1509_13262} {RNA1509_13262, RNA815_14383}
5. MligTC455_29254 1578 32.88 Mlig455_004002, Mlig455_004085

Neo: -

Age: Down-Up-Up

Region-enriched R4: 1.170/0.04331
Region-enriched R5: 1.025/0.01700

 MAP2K4 0.95 - - - 0.950 - -

Mlig455_004002 {REF} {Length: 4215} {Pfam: Protein kinase domain [PF00069.27, score=182.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=134.3]; Kinase-like [PF14531.8, score=29.5]; ABC1 atypical kinase-like domain [PF03109.18, score=21.1]; Seadornavirus VP7 [PF07387.13, score=19.1]} {Human: ENSG00000065559, MAP2K4, mitogen-activated protein kinase kinase 4, [RH, Score=412, Expect=5e-143]} {Mouse: ENSMUSG00000033352, Map2k4, mitogen-activated protein kinase kinase 4, [RH, Score=413, Expect=1e-143]} {Dmel: FBgn0024326, Mkk4, MAP kinase kinase 4, [RH, Score=374, Expect=5e-128]} {Celegans: WBGene00004758, sek-1, Dual specificity mitogen-activated protein kinase kinase sek-1, [RH, Score=297, Expect=4e-99]} {Smed: dd_Smed_v6_3173_0_1, dd_Smed_v6_3173_0_1, [RH, Score=376, Expect=9e-130]} {RNA1509_10335} {RNA1310_8052} {RNA815_6872.2}

Mlig455_004085 {REF} {Length: 2848} {TRANSSPLICED} {Pfam: Protein kinase domain [PF00069.27, score=182.9]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=134.3]; Kinase-like [PF14531.8, score=29.5]; ABC1 atypical kinase-like domain [PF03109.18, score=21.1]; Seadornavirus VP7 [PF07387.13, score=19.1]} {Human: ENSG00000065559, MAP2K4, mitogen-activated protein kinase kinase 4, [RH, Score=412, Expect=5e-143]} {Mouse: ENSMUSG00000033352, Map2k4, mitogen-activated protein kinase kinase 4, [RH, Score=413, Expect=1e-143]} {Dmel: FBgn0024326, Mkk4, MAP kinase kinase 4, [RH, Score=374, Expect=5e-128]} {Celegans: WBGene00004758, sek-1, Dual specificity mitogen-activated protein kinase kinase sek-1, [RH, Score=297, Expect=4e-99]} {Smed: dd_Smed_v6_3173_0_1, dd_Smed_v6_3173_0_1, [RH, Score=376, Expect=9e-130]} {RNA1509_10335} {RNA1310_8052} {RNA815_6872.2}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA