M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29463

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29463 407 8.48 Mlig455_021882

Neo: -

Age: logFC(26M/2M)=-0.484

 RPL5 Mlig455_021882 {REF} {Length: 3528} {TRANSSPLICED} {Pfam: Ribosomal large subunit proteins 60S L5, and 50S L18 [PF17144.6, score=289.3]; Centrosomal colon cancer autoantigen protein family [PF15964.7, score=20.5]} {Human: ENSG00000122406, RPL5, ribosomal protein L5, [Score=348, Expect=2e-117]} {Mouse: ENSMUSG00000058558, Rpl5, ribosomal protein L5, [Score=334, Expect=3e-112]} {Dmel: FBgn0064225, RpL5, Ribosomal protein L5, [Score=360, Expect=1e-122]} {Celegans: WBGene00004416, rpl-5, 60S ribosomal protein L5, [Score=309, Expect=1e-102]} {Smed: dd_Smed_v6_151_0_1, dd_Smed_v6_151_0_1, [Score=316, Expect=1e-105]} {RNA1509_42574} {RNA1310_5942.1} {RNA815_10534.2}

Cumulative graph for MligTC455_29463

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -6.077 3.417 0.12527 0.72017
RegionR2 1.786 3.417 0.02130 0.15967
RegionR3 1.318 3.417 0.06815 0.46144
RegionR4 0.924 3.417 0.29793 0.61017
RegionR5 0.571 3.417 0.51245 0.87559
RegionR6 0.134 3.417 0.79986 1.00000
RegionR7 0.12 3.417 0.81412 1.00000
RegionR8 1.226 3.417 0.26320 0.88540

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 5.093 3.417 0.34228 1.00000
RegenerationR2 0.209 3.417 0.58645 0.90916
RegenerationR3 0.411 3.417 0.38422 0.79254
RegenerationR4 0.752 3.417 0.14119 0.56372
RegenerationR5 0.486 3.417 0.30288 0.73026
RegenerationR6 1.197 3.417 0.02892 0.21193
RegenerationBL 1.045 3.417 0.08401 0.33960
RegenerationTP -0.642 3.417 0.44121 0.86075


Genes with expression patterns similar to MligTC455_29463

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29463 407 8.48 Mlig455_021882

Neo: -

Age: logFC(26M/2M)=-0.484

 RPL5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_021882 {REF} {Length: 3528} {TRANSSPLICED} {Pfam: Ribosomal large subunit proteins 60S L5, and 50S L18 [PF17144.6, score=289.3]; Centrosomal colon cancer autoantigen protein family [PF15964.7, score=20.5]} {Human: ENSG00000122406, RPL5, ribosomal protein L5, [Score=348, Expect=2e-117]} {Mouse: ENSMUSG00000058558, Rpl5, ribosomal protein L5, [Score=334, Expect=3e-112]} {Dmel: FBgn0064225, RpL5, Ribosomal protein L5, [Score=360, Expect=1e-122]} {Celegans: WBGene00004416, rpl-5, 60S ribosomal protein L5, [Score=309, Expect=1e-102]} {Smed: dd_Smed_v6_151_0_1, dd_Smed_v6_151_0_1, [Score=316, Expect=1e-105]} {RNA1509_42574} {RNA1310_5942.1} {RNA815_10534.2}
2. MligTC455_32329 342 7.13 Mlig455_021890, Mlig455_021966

Neo: -

Age: -

 SDCCAG8 4.808 0.974 0.970 0.979 - 0.973 0.912

Mlig455_021890 {REF} {Length: 560} {NoTransDecoderORF}

Mlig455_021966 {REF} {Length: 4267} {Pfam: Centrosomal colon cancer autoantigen protein family [PF15964.7, score=151.0]} {Human: ENSG00000276111, SDCCAG8, serologically defined colon cancer antigen 8, [Score=114, Expect=2e-25]; ENSG00000054282, SDCCAG8, serologically defined colon cancer antigen 8, [Score=114, Expect=2e-25]} {Mouse: ENSMUSG00000026504, Sdccag8, serologically defined colon cancer antigen 8, [Score=97.1, Expect=2e-20]} {Smed: dd_Smed_v6_9295_0_2, dd_Smed_v6_9295_0_2, [Score=88.2, Expect=5e-18]} {RNA1509_42574} {RNA1310_5942.1} {RNA815_9353.1}
3. MligTC455_18663 961 20.02 Mlig455_026908, Mlig455_030748, Mlig455_030785

Neo: -

Age: -

Region-enriched R2: 1.212/0.02524

 CEP290 2.576 - - 0.865 - 0.745 0.966

Mlig455_026908 {REF} {Length: 8633} {Pfam: Coiled-coil region of centrosome protein CE290 [PF16574.7, score=98.4]; Autophagy protein 16 (ATG16) [PF08614.13, score=21.6]; Leucine zipper [PF15294.8, score=21.2]; SWI5-dependent HO expression protein 3 [PF17078.7, score=19.2]} {Human: ENSG00000198707, CEP290, centrosomal protein 290, [RH, Score=997, Expect=0.0]} {Mouse: ENSMUSG00000019971, Cep290, centrosomal protein 290, [RH, Score=985, Expect=0.0]} {Smed: dd_Smed_v6_7145_0_1, dd_Smed_v6_7145_0_1, [RH, Score=1252, Expect=0.0]} {RNA1509_1157, RNA1509_48500} {RNA1310_349, RNA1509_48500} {RNA1509_48500, RNA815_113}

Mlig455_030748 {REF} {Length: 8388} {TRANSSPLICED} {Pfam: Coiled-coil region of centrosome protein CE290 [PF16574.7, score=99.5]} {Human: ENSG00000198707, CEP290, centrosomal protein 290, [Score=620, Expect=0.0]} {Mouse: ENSMUSG00000019971, Cep290, centrosomal protein 290, [Score=525, Expect=9e-158]} {Smed: dd_Smed_v6_7145_0_1, dd_Smed_v6_7145_0_1, [Score=759, Expect=0.0]} {RNA1509_1157} {RNA1310_349} {RNA815_113}

Mlig455_030785 {REF} {Length: 8250} {TRANSSPLICED} {Pfam: Coiled-coil region of centrosome protein CE290 [PF16574.7, score=99.5]} {Human: ENSG00000198707, CEP290, centrosomal protein 290, [Score=620, Expect=0.0]} {Mouse: ENSMUSG00000019971, Cep290, centrosomal protein 290, [Score=525, Expect=9e-158]} {Smed: dd_Smed_v6_7145_0_1, dd_Smed_v6_7145_0_1, [Score=759, Expect=0.0]} {RNA1509_1157} {RNA1310_349} {RNA815_113}
4. MligTC455_37139 1583 32.98 Mlig455_017144, Mlig455_019681

Neo: -

Age: -

 TRPM3 1.706 0.754 0.952 - - - -

Mlig455_017144 {REF} {Length: 5140} {TRANSSPLICED} {Pfam: SLOG in TRPM [PF18139.3, score=159.9]; SLOG in TRPM, prokaryote [PF18171.3, score=53.1]; Ion transport protein [PF00520.33, score=37.8]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=358, Expect=3e-102]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=360, Expect=4e-103]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=335, Expect=1e-95]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=243, Expect=5e-65]} {Smed: dd_Smed_v6_9288_0_1, dd_Smed_v6_9288_0_1, [RH, Score=502, Expect=2e-155]} {RNA1509_6375} {RNA1310_1012, RNA1509_6375} {RNA1509_6375, RNA815_5496.1}

Mlig455_019681 {REF} {Length: 5114} {TRANSSPLICED} {Pfam: SLOG in TRPM [PF18139.3, score=161.2]; SLOG in TRPM, prokaryote [PF18171.3, score=53.2]; Ion transport protein [PF00520.33, score=37.2]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=364, Expect=5e-103]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=363, Expect=1e-102]} {Dmel: FBgn0265194, Trpm, Transient receptor potential cation channel, subfamily M, [Score=345, Expect=9e-97]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=239, Expect=1e-63]} {Smed: dd_Smed_v6_9288_0_1, dd_Smed_v6_9288_0_1, [RH, Score=508, Expect=1e-157]} {RNA1509_43040, RNA1509_6375} {RNA1310_1012, RNA1509_43040} {RNA1509_43040, RNA815_5496.1}
5. MligTC455_14038 196 4.08 Mlig455_069252

Neo: -

Age: logFC(26M/2M)=-0.497

 1.699 - 0.742 - - 0.957 - Mlig455_069252 {REF} {Length: 1750} {RNA1509_33444} {RNA1310_16640} {RNA815_5282}
6. MligTC455_30454 39 0.82 Mlig455_022994

Neo: -

Age: Down-Up-Down, logFC(26M/2M)=2.562

 0.957 - - - - 0.957 - Mlig455_022994 {REF} {Length: 1336} {Pfam: Phage integrase family [PF00589.24, score=23.1]} {RNA1509_25737} {RNA1310_2048} {RNA815_551.1}
7. MligTC455_31513 254 5.29 Mlig455_036847, Mlig455_052983

Neo: -

Age: -

 CAPN5 0.956 0.956 - - - - -

Mlig455_036847 {REF} {Length: 4572} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=189.2]; Calpain large subunit, domain III [PF01067.24, score=50.9]; C2 domain [PF00168.32, score=34.3]} {Human: ENSG00000149260, CAPN5, calpain 5, [Score=298, Expect=2e-91]} {Mouse: ENSMUSG00000035547, Capn5, calpain 5, [Score=297, Expect=6e-91]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=184, Expect=3e-50]} {Celegans: WBGene00006606, tra-3, Calpain-5, [Score=198, Expect=8e-55]} {Smed: dd_Smed_v6_3864_0_1, dd_Smed_v6_3864_0_1, [RH, Score=201, Expect=5e-56]} {RNA1509_18066} {RNA1310_11620, RNA1509_18066} {RNA1509_18066, RNA815_3340}

Mlig455_052983 {REF} {Length: 4195} {Pfam: Calpain family cysteine protease [PF00648.23, score=62.2]; Calpain large subunit, domain III [PF01067.24, score=51.2]; C2 domain [PF00168.32, score=34.7]} {Human: ENSG00000149260, CAPN5, calpain 5, [Score=185, Expect=1e-50]} {Mouse: ENSMUSG00000035547, Capn5, calpain 5, [Score=187, Expect=1e-51]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=91.7, Expect=3e-19]} {Celegans: WBGene00006606, tra-3, Calpain-5, [Score=114, Expect=1e-26]} {Smed: dd_Smed_v6_8673_0_1, dd_Smed_v6_8673_0_1, [Score=110, Expect=4e-25]} {RNA1509_18066} {RNA1310_11620} {RNA815_3340}
8. MligTC455_20525 835 17.4 Mlig455_011504

Neo: -

Age: Up-Down-Down

 KMT2C 0.955 - - - - 0.955 - Mlig455_011504 {REF} {Length: 14333} {TRANSSPLICED} {Pfam: PHD-finger [PF00628.31, score=101.1]; F/Y rich C-terminus [PF05965.16, score=82.0]; SET domain [PF00856.30, score=71.8]; F/Y-rich N-terminus [PF05964.16, score=63.3]; PHD-zinc-finger like domain [PF13832.8, score=56.8]; PHD-like zinc-binding domain [PF13771.8, score=49.6]; PHD-finger [PF13831.8, score=18.4]} {Human: ENSG00000055609, KMT2C, lysine methyltransferase 2C, [RH, Score=647, Expect=0.0]} {Mouse: ENSMUSG00000038056, Kmt2c, lysine (K)-specific methyltransferase 2C, [RH, Score=642, Expect=0.0]} {Dmel: FBgn0023518, trr, trithorax-related, [RH, Score=573, Expect=3e-165]} {Celegans: WBGene00011729, set-16, Histone-lysine N-methyltransferase, [RH, Score=227, Expect=8e-59]} {Smed: dd_Smed_v6_6838_0_1, dd_Smed_v6_6838_0_1, [Score=570, Expect=8e-172]} {RNA1509_12609} {RNA1310_2188} {RNA815_5011}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA