TomoSeq data search

Data search

Results for MligTC455_31513

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_31513

254

5.29

Mlig455_036847, Mlig455_052983

Neo: -

Age: -

CAPN5

Mlig455_036847 {REF} {Length: 4572} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=189.2]; Calpain large subunit, domain III [PF01067.24, score=50.9]; C2 domain [PF00168.32, score=34.3]} {Human: ENSG00000149260, CAPN5, calpain 5, [Score=298, Expect=2e-91]} {Mouse: ENSMUSG00000035547, Capn5, calpain 5, [Score=297, Expect=6e-91]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=184, Expect=3e-50]} {Celegans: WBGene00006606, tra-3, Calpain-5, [Score=198, Expect=8e-55]} {Smed: dd_Smed_v6_3864_0_1, dd_Smed_v6_3864_0_1, [RH, Score=201, Expect=5e-56]} {RNA1509_18066} {RNA1310_11620, RNA1509_18066} {RNA1509_18066, RNA815_3340}

Mlig455_052983 {REF} {Length: 4195} {Pfam: Calpain family cysteine protease [PF00648.23, score=62.2]; Calpain large subunit, domain III [PF01067.24, score=51.2]; C2 domain [PF00168.32, score=34.7]} {Human: ENSG00000149260, CAPN5, calpain 5, [Score=185, Expect=1e-50]} {Mouse: ENSMUSG00000035547, Capn5, calpain 5, [Score=187, Expect=1e-51]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=91.7, Expect=3e-19]} {Celegans: WBGene00006606, tra-3, Calpain-5, [Score=114, Expect=1e-26]} {Smed: dd_Smed_v6_8673_0_1, dd_Smed_v6_8673_0_1, [Score=110, Expect=4e-25]} {RNA1509_18066} {RNA1310_11620} {RNA815_3340}

Cumulative graph for MligTC455_31513

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-7.539	2.994	0.03572	0.46903
RegionR2	2.742	2.994	0.00382	0.05391
RegionR3	2.007	2.994	0.00647	0.11321
RegionR4	-0.546	2.994	0.95819	1.00000
RegionR5	-0.362	2.994	0.93611	1.00000
RegionR6	1.21	2.994	0.17213	0.73034
RegionR7	2.021	2.994	0.01887	0.25330
RegionR8	0.466	2.994	0.67793	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	3.424	2.994	0.99977	1.00000
RegenerationR2	-1.364	2.994	0.06466	0.41664
RegenerationR3	-0.579	2.994	0.45050	0.83209
RegenerationR4	0.144	2.994	0.87164	1.00000
RegenerationR5	-0.642	2.994	0.40148	0.80030
RegenerationR6	-2.951	2.994	0.00923	0.11793
RegenerationBL	-4.733	2.994	0.04179	0.23245
RegenerationTP	-0.617	2.994	0.57271	0.94589

Genes with expression patterns similar to MligTC455_31513

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_31513	254	5.29	Mlig455_036847, Mlig455_052983	Neo: - Age: -	CAPN5	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_036847 {REF} {Length: 4572} {TRANSSPLICED} {Pfam: Calpain family cysteine protease [PF00648.23, score=189.2]; Calpain large subunit, domain III [PF01067.24, score=50.9]; C2 domain [PF00168.32, score=34.3]} {Human: ENSG00000149260, CAPN5, calpain 5, [Score=298, Expect=2e-91]} {Mouse: ENSMUSG00000035547, Capn5, calpain 5, [Score=297, Expect=6e-91]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=184, Expect=3e-50]} {Celegans: WBGene00006606, tra-3, Calpain-5, [Score=198, Expect=8e-55]} {Smed: dd_Smed_v6_3864_0_1, dd_Smed_v6_3864_0_1, [RH, Score=201, Expect=5e-56]} {RNA1509_18066} {RNA1310_11620, RNA1509_18066} {RNA1509_18066, RNA815_3340} Mlig455_052983 {REF} {Length: 4195} {Pfam: Calpain family cysteine protease [PF00648.23, score=62.2]; Calpain large subunit, domain III [PF01067.24, score=51.2]; C2 domain [PF00168.32, score=34.7]} {Human: ENSG00000149260, CAPN5, calpain 5, [Score=185, Expect=1e-50]} {Mouse: ENSMUSG00000035547, Capn5, calpain 5, [Score=187, Expect=1e-51]} {Dmel: FBgn0012051, CalpA, Calpain-A, [Score=91.7, Expect=3e-19]} {Celegans: WBGene00006606, tra-3, Calpain-5, [Score=114, Expect=1e-26]} {Smed: dd_Smed_v6_8673_0_1, dd_Smed_v6_8673_0_1, [Score=110, Expect=4e-25]} {RNA1509_18066} {RNA1310_11620} {RNA815_3340}
2.	MligTC455_35333	90	1.87	Mlig455_067763	Neo: - Age: -	RPS6KB1	2.402	-	-	0.701	-	0.959	0.742	Mlig455_067763 {REF} {Length: 2200} {Pfam: Protein kinase domain [PF00069.27, score=227.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=114.1]; Protein kinase C terminal domain [PF00433.26, score=39.1]; Kinase-like [PF14531.8, score=30.7]} {Human: ENSG00000108443, RPS6KB1, ribosomal protein S6 kinase B1, [Score=453, Expect=2e-155]; ENSG00000175634, RPS6KB2, ribosomal protein S6 kinase B2, [Score=441, Expect=2e-150]} {Mouse: ENSMUSG00000020516, Rps6kb1, ribosomal protein S6 kinase, polypeptide 1, [Score=452, Expect=2e-154]; ENSMUSG00000097721, Rps6kb2, ribosomal protein S6 kinase, polypeptide 2, [Score=431, Expect=1e-146]; ENSMUSG00000024830, Rps6kb2, ribosomal protein S6 kinase, polypeptide 2, [Score=431, Expect=1e-146]} {Dmel: FBgn0283472, S6k, Ribosomal protein S6 kinase, [Score=437, Expect=5e-149]} {Celegans: WBGene00012929, rsks-1, Ribosomal protein S6 kinase beta, [Score=427, Expect=2e-144]} {Smed: dd_Smed_v6_5658_0_1, dd_Smed_v6_5658_0_1, [RH, Score=466, Expect=2e-160]} {RNA1509_36368} {RNA1310_14771.1} {RNA815_3550}
3.	MligTC455_25129	104	2.17	Mlig455_009262	Neo: Irradiation Age: -	GPR75-ASB3	0.979	-	-	-	-	-	0.979	Mlig455_009262 {REF} {Length: 3797} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=114.7]; Ankyrin repeats (many copies) [PF13637.8, score=89.9]; Ankyrin repeats (many copies) [PF13857.8, score=83.0]; Ankyrin repeat [PF13606.8, score=78.8]; Ankyrin repeat [PF00023.32, score=70.5]; SOCS box [PF07525.18, score=35.8]} {Human: ENSG00000270898, GPR75-ASB3, GPR75-ASB3 readthrough, [Score=105, Expect=2e-23]; ENSG00000115239, ASB3, ankyrin repeat and SOCS box containing 3, [Score=105, Expect=1e-23]} {Mouse: ENSMUSG00000020305, Asb3, ankyrin repeat and SOCS box-containing 3, [Score=99.0, Expect=9e-22]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=85.1, Expect=4e-17]} {Celegans: WBGene00019782, M60.7, [RH, Score=133, Expect=4e-34]} {Smed: dd_Smed_v6_2072_0_8, dd_Smed_v6_2072_0_8, [Score=90.9, Expect=4e-19]} {RNA1509_11976} {RNA1310_19298} {RNA815_7424.1}
4.	MligTC455_44563	191	3.98	Mlig455_048029	Neo: - Age: - Region-enriched R3: 2.018/0.03006		0.974	-	-	-	-	-	0.974	Mlig455_048029 {REF} {Length: 1007} {RNA1509_12558} {RNA1310_10969} {RNA815_3485.1}
5.	MligTC455_45810	64	1.34	Mlig455_067484	Neo: - Age: Down-Up-Down	GNB2	0.968	-	-	0.968	-	-	-	Mlig455_067484 {REF} {Length: 2984} {Pfam: WD domain, G-beta repeat [PF00400.34, score=114.2]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=23.7]} {Human: ENSG00000172354, GNB2, G protein subunit beta 2, [Score=338, Expect=3e-115]; ENSG00000114450, GNB4, G protein subunit beta 4, [Score=338, Expect=6e-115]; ENSG00000078369, GNB1, G protein subunit beta 1, [Score=338, Expect=3e-115]; ENSG00000111664, GNB3, G protein subunit beta 3, [Score=327, Expect=2e-110]} {Mouse: ENSMUSG00000029064, Gnb1, guanine nucleotide binding protein (G protein), beta 1, [Score=338, Expect=2e-115]; ENSMUSG00000029713, Gnb2, guanine nucleotide binding protein (G protein), beta 2, [Score=338, Expect=2e-115]; ENSMUSG00000023439, Gnb3, guanine nucleotide binding protein (G protein), beta 3, [Score=328, Expect=3e-111]; ENSMUSG00000027669, Gnb4, guanine nucleotide binding protein (G protein), beta 4, [Score=325, Expect=4e-110]} {Dmel: FBgn0001105, Gbeta13F, G protein beta-subunit 13F, [Score=349, Expect=7e-120]} {Celegans: WBGene00001679, gpb-1, Guanine nucleotide-binding protein subunit beta-1, [Score=345, Expect=4e-118]} {Smed: dd_Smed_v6_2872_0_1, dd_Smed_v6_2872_0_1, [RH, Score=377, Expect=2e-130]} {RNA1509_26331, RNA1509_41740, RNA1509_4807} {RNA1310_7323, RNA1509_26331, RNA1509_41740, RNA1509_4807} {RNA1509_26331, RNA1509_41740, RNA1509_4807, RNA815_2947}
6.	MligTC455_37300	56	1.16	Mlig455_043712	Neo: - Age: -		0.964	-	-	-	0.964	-	-	Mlig455_043712 {REF} {Length: 3065} {NoTransDecoderORF} {RNA1509_41553} {RNA1310_46112} {RNA815_38063.1}
7.	MligTC455_17064	24	0.5	Mlig455_061591	Neo: - Age: -	MAP3K19	0.963	-	-	-	-	0.963	-	Mlig455_061591 {REF} {Length: 2755} {Pfam: Protein kinase domain [PF00069.27, score=149.5]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=111.2]; Ankyrin repeat [PF00023.32, score=38.0]; Ankyrin repeat [PF13606.8, score=37.7]; Ankyrin repeats (3 copies) [PF12796.9, score=36.5]; Ankyrin repeats (many copies) [PF13857.8, score=35.3]; Fungal protein kinase [PF17667.3, score=27.1]; Ankyrin repeats (many copies) [PF13637.8, score=24.2]; Phosphotransferase enzyme family [PF01636.25, score=20.0]; ABC1 atypical kinase-like domain [PF03109.18, score=20.0]} {Human: ENSG00000176601, MAP3K19, mitogen-activated protein kinase kinase kinase 19, [Score=115, Expect=4e-27]; ENSG00000145632, PLK2, polo like kinase 2, [Score=112, Expect=2e-26]} {Mouse: ENSMUSG00000051590, Map3k19, mitogen-activated protein kinase kinase kinase 19, [Score=123, Expect=1e-30]} {Dmel: FBgn0014006, Ask1, Apoptotic signal-regulating kinase 1, [Score=103, Expect=1e-23]} {Celegans: WBGene00006941, wnk-1, Serine/threonine-protein kinase WNK, [Score=99.4, Expect=3e-22]} {Smed: dd_Smed_v6_4273_0_1, dd_Smed_v6_4273_0_1, [Score=105, Expect=1e-24]} {RNA1310_26059.1} {RNA815_11924}
8.	MligTC455_42192	193	4.03	Mlig455_014551, Mlig455_048360	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.405		0.96	-	-	0.960	-	-	-	Mlig455_014551 {REF} {Length: 1927} {TRANSSPLICED} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=52.9]; Capsular polysaccharide synthesis protein [PF05704.14, score=18.8]} {Smed: dd_Smed_v6_6819_0_1, dd_Smed_v6_6819_0_1, [Score=144, Expect=4e-40]} {RNA1509_15387} {RNA1310_18607} {RNA815_7321} Mlig455_048360 {REF} {Length: 1891} {Pfam: Glycosyltransferase sugar-binding region containing DXD motif [PF04488.17, score=37.1]; Capsular polysaccharide synthesis protein [PF05704.14, score=19.6]} {Smed: dd_Smed_v6_7249_0_1, dd_Smed_v6_7249_0_1, [Score=110, Expect=4e-29]} {RNA1509_15387} {RNA1310_18607} {RNA815_7321}
9.	MligTC455_12621	61	1.26	Mlig455_034404	Neo: - Age: -		0.959	-	-	-	-	0.959	-	Mlig455_034404 {REF} {Length: 2372} {NoTransDecoderORF} {RNA1509_56890} {RNA1310_113743} {RNA815_18496.1}
10.	MligTC455_29463	407	8.48	Mlig455_021882	Neo: - Age: logFC(26M/2M)=-0.484	RPL5	0.956	0.956	-	-	-	-	-	Mlig455_021882 {REF} {Length: 3528} {TRANSSPLICED} {Pfam: Ribosomal large subunit proteins 60S L5, and 50S L18 [PF17144.6, score=289.3]; Centrosomal colon cancer autoantigen protein family [PF15964.7, score=20.5]} {Human: ENSG00000122406, RPL5, ribosomal protein L5, [Score=348, Expect=2e-117]} {Mouse: ENSMUSG00000058558, Rpl5, ribosomal protein L5, [Score=334, Expect=3e-112]} {Dmel: FBgn0064225, RpL5, Ribosomal protein L5, [Score=360, Expect=1e-122]} {Celegans: WBGene00004416, rpl-5, 60S ribosomal protein L5, [Score=309, Expect=1e-102]} {Smed: dd_Smed_v6_151_0_1, dd_Smed_v6_151_0_1, [Score=316, Expect=1e-105]} {RNA1509_42574} {RNA1310_5942.1} {RNA815_10534.2}
11.	MligTC455_21360	40	0.83	Mlig455_016247, Mlig455_017341	Neo: - Age: Up-Down-Up		0.955	-	-	-	-	-	0.955	Mlig455_016247 {REF} {Length: 6357} {RNA1509_24654} {RNA1310_7589} {RNA815_23057} Mlig455_017341 {REF} {Length: 1053} {RNA1310_97708}
12.	MligTC455_25127	347	7.24	Mlig455_009251	Neo: Irradiation Age: Down-Up-Up, logFC(26M/2M)=0.787	GPR75-ASB3	0.954	-	-	-	-	-	0.954	Mlig455_009251 {REF} {Length: 3764} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=114.7]; Ankyrin repeats (many copies) [PF13637.8, score=89.9]; Ankyrin repeats (many copies) [PF13857.8, score=83.0]; Ankyrin repeat [PF13606.8, score=78.8]; Ankyrin repeat [PF00023.32, score=70.5]; SOCS box [PF07525.18, score=35.8]} {Human: ENSG00000270898, GPR75-ASB3, GPR75-ASB3 readthrough, [Score=105, Expect=2e-23]; ENSG00000115239, ASB3, ankyrin repeat and SOCS box containing 3, [Score=105, Expect=1e-23]} {Mouse: ENSMUSG00000020305, Asb3, ankyrin repeat and SOCS box-containing 3, [Score=99.0, Expect=9e-22]} {Dmel: FBgn0011747, Ank, Ankyrin, [Score=85.1, Expect=4e-17]} {Celegans: WBGene00019782, M60.7, [RH, Score=133, Expect=4e-34]} {Smed: dd_Smed_v6_2072_0_8, dd_Smed_v6_2072_0_8, [Score=90.9, Expect=4e-19]} {RNA1509_11976} {RNA1310_16980.1} {RNA815_7424.1}
13.	MligTC455_48577	51	1.05	Mlig455_028218	Neo: - Age: -		0.951	-	-	0.951	-	-	-	Mlig455_028218 {REF} {Length: 177} {NoTransDecoderORF} {RNA1509_33890} {RNA1310_2889.1} {RNA815_920.1}
14.	MligTC455_15771	15	0.31	Mlig455_013616	Neo: - Age: -		0.95	-	-	-	0.950	-	-	Mlig455_013616 {REF} {Length: 1678} {Pfam: Glycine rich protein [PF12810.9, score=28.8]} {RNA1509_48637} {RNA1310_55197} {RNA815_27869}

Berezikov Lab - 2020-2021 © ERIBA