M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29483

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29483 246 5.12 Mlig455_029965

Neo: -

Age: -

 ZNF316 Mlig455_029965 {REF} {Length: 2716} {TRANSSPLICED} {Pfam: Zinc-finger double domain [PF13465.8, score=47.1]; C2H2-type zinc finger [PF13894.8, score=43.5]; Zinc finger, C2H2 type [PF00096.28, score=41.6]} {Human: ENSG00000205903, ZNF316, zinc finger protein 316, [Score=97.4, Expect=9e-21]} {Mouse: ENSMUSG00000054715, Zscan22, zinc finger and SCAN domain containing 22, [Score=100, Expect=2e-22]; ENSMUSG00000046658, Zfp316, zinc finger protein 316, [Score=99.8, Expect=1e-21]} {Dmel: FBgn0266450, Kr-h1, Kruppel homolog 1, [Score=92.4, Expect=2e-19]} {Celegans: WBGene00003845, odd-1, Protein odd-skipped-related 1, [Score=80.9, Expect=4e-17]} {Smed: dd_Smed_v6_9867_0_1, dd_Smed_v6_9867_0_1, [Score=75.9, Expect=1e-14]} {RNA1509_23895} {RNA1310_7507, RNA1509_23895} {RNA1509_23895, RNA815_3059}

Cumulative graph for MligTC455_29483

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.926 2.975 0.58913 1.00000
RegionR2 0.279 2.975 0.67309 1.00000
RegionR3 -0.314 2.975 0.55039 1.00000
RegionR4 0.618 2.975 0.35884 0.68154
RegionR5 0.14 2.975 0.76377 1.00000
RegionR6 -0.528 2.975 0.34871 0.93420
RegionR7 -1.006 2.975 0.23390 0.85832
RegionR8 -0.116 2.975 0.89775 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -6.269 2.975 0.21312 0.95139
RegenerationR2 0.496 2.975 0.24029 0.68807
RegenerationR3 -0.543 2.975 0.35282 0.77268
RegenerationR4 -0.503 2.975 0.40881 0.81953
RegenerationR5 0.597 2.975 0.22724 0.66136
RegenerationR6 0.703 2.975 0.23320 0.58039
RegenerationBL -5.656 2.975 0.00629 0.07617
RegenerationTP -0.447 2.975 0.62943 0.97747


Genes with expression patterns similar to MligTC455_29483

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29483 246 5.12 Mlig455_029965

Neo: -

Age: -

 ZNF316 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_029965 {REF} {Length: 2716} {TRANSSPLICED} {Pfam: Zinc-finger double domain [PF13465.8, score=47.1]; C2H2-type zinc finger [PF13894.8, score=43.5]; Zinc finger, C2H2 type [PF00096.28, score=41.6]} {Human: ENSG00000205903, ZNF316, zinc finger protein 316, [Score=97.4, Expect=9e-21]} {Mouse: ENSMUSG00000054715, Zscan22, zinc finger and SCAN domain containing 22, [Score=100, Expect=2e-22]; ENSMUSG00000046658, Zfp316, zinc finger protein 316, [Score=99.8, Expect=1e-21]} {Dmel: FBgn0266450, Kr-h1, Kruppel homolog 1, [Score=92.4, Expect=2e-19]} {Celegans: WBGene00003845, odd-1, Protein odd-skipped-related 1, [Score=80.9, Expect=4e-17]} {Smed: dd_Smed_v6_9867_0_1, dd_Smed_v6_9867_0_1, [Score=75.9, Expect=1e-14]} {RNA1509_23895} {RNA1310_7507, RNA1509_23895} {RNA1509_23895, RNA815_3059}
2. MligTC455_28208 284 5.92 Mlig455_021874

Neo: -

Age: -

 2.437 - - 0.956 0.772 - 0.709 Mlig455_021874 {REF} {Length: 7459} {Smed: dd_Smed_v6_3783_0_1, dd_Smed_v6_3783_0_1, [RH, Score=428, Expect=5e-123]} {RNA1509_10937} {RNA1310_1042.1} {RNA815_1808}
3. MligTC455_03020 77 1.61 Mlig455_031009

Neo: -

Age: -

 PCDH7 1.677 - - 0.972 - 0.705 - Mlig455_031009 {REF} {Length: 4201} {Pfam: Cadherin domain [PF00028.19, score=251.4]} {Human: ENSG00000169851, PCDH7, protocadherin 7, [Score=236, Expect=2e-63]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=263, Expect=2e-72]} {Dmel: FBgn0284247, ds, dachsous, [Score=207, Expect=1e-53]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=172, Expect=3e-43]} {Smed: dd_Smed_v6_17019_0_1, dd_Smed_v6_17019_0_1, [Score=290, Expect=8e-83]} {RNA1509_5672} {RNA1310_47266} {RNA815_2173}
4. MligTC455_49225 236 4.91 Mlig455_059257

Neo: -

Age: Up-Down-Up

 VPS41 0.965 - - 0.965 - - - Mlig455_059257 {REF} {Length: 5244} {Pfam: Region in Clathrin and VPS [PF00637.22, score=59.8]; zinc-RING finger domain [PF14634.8, score=22.0]} {Human: ENSG00000006715, VPS41, VPS41, HOPS complex subunit, [RH, Score=464, Expect=5e-150]} {Mouse: ENSMUSG00000041236, Vps41, VPS41 HOPS complex subunit, [RH, Score=459, Expect=3e-148]} {Dmel: FBgn0002566, lt, light, [RH, Score=401, Expect=2e-126]} {Celegans: WBGene00017974, vps-41, Vacuolar protein sorting-associated protein 41 homolog, [RH, Score=303, Expect=2e-89]} {Smed: dd_Smed_v6_3481_0_1, dd_Smed_v6_3481_0_1, [RH, Score=390, Expect=7e-122]} {RNA1509_34132} {RNA1310_6719} {RNA815_4867}
5. MligTC455_25201 771 16.07 Mlig455_067420, Mlig455_069560

Neo: -

Age: -

 SETD3 0.961 - - - - 0.961 -

Mlig455_067420 {REF} {Length: 3064} {TRANSSPLICED} {Pfam: SET domain [PF00856.30, score=37.7]; Rubisco LSMT substrate-binding [PF09273.13, score=25.0]} {Human: ENSG00000183576, SETD3, SET domain containing 3, [RH, Score=189, Expect=5e-53]} {Mouse: ENSMUSG00000056770, Setd3, SET domain containing 3, [RH, Score=191, Expect=4e-54]} {Dmel: FBgn0052732, CG32732, [RH, Score=127, Expect=1e-31]} {Smed: dd_Smed_v6_12202_0_1, dd_Smed_v6_12202_0_1, [RH, Score=137, Expect=1e-35]} {RNA1509_49950, RNA1509_50005, RNA1509_51716, RNA1509_51955, RNA1509_56782} {RNA1310_16143.1, RNA1509_49950, RNA1509_50005, RNA1509_51716, RNA1509_51955, RNA1509_56782} {RNA1509_49950, RNA1509_50005, RNA1509_51716, RNA1509_51955, RNA1509_56782, RNA815_6937}

Mlig455_069560 {REF} {Length: 3056} {TRANSSPLICED} {Pfam: SET domain [PF00856.30, score=37.7]; Rubisco LSMT substrate-binding [PF09273.13, score=25.6]} {Human: ENSG00000183576, SETD3, SET domain containing 3, [RH, Score=187, Expect=3e-52]} {Mouse: ENSMUSG00000056770, Setd3, SET domain containing 3, [RH, Score=192, Expect=2e-54]} {Dmel: FBgn0052732, CG32732, [RH, Score=127, Expect=2e-31]} {Smed: dd_Smed_v6_12202_0_1, dd_Smed_v6_12202_0_1, [RH, Score=138, Expect=7e-36]} {RNA1509_49950} {RNA1310_16143.1} {RNA815_6937}
6. MligTC455_52497 324 6.76 Mlig455_013313

Neo: -

Age: -

Region-enriched R5: 1.460/0.00112

 CACFD1 0.96 - - - - 0.960 - Mlig455_013313 {REF} {Length: 7940} {Pfam: Uncharacterized conserved protein CG6151-P [PF10233.11, score=67.5]} {Human: ENSG00000160325, CACFD1, calcium channel flower domain containing 1, [Score=57.0, Expect=9e-10]; ENSG00000280479, CACFD1, calcium channel flower domain containing 1, [Score=57.0, Expect=9e-10]} {Mouse: ENSMUSG00000015488, Cacfd1, calcium channel flower domain containing 1, [Score=55.8, Expect=6e-10]} {RNA1509_20896, RNA1509_38321, RNA1509_42052, RNA1509_55481} {RNA1310_29216, RNA1509_20896, RNA1509_38321, RNA1509_55481} {RNA1509_20896, RNA1509_38321, RNA1509_55481, RNA815_11121.1}
7. MligTC455_03019 65 1.35 Mlig455_030634

Neo: -

Age: Up-Down-Down

 PCDH7 0.954 - - 0.954 - - - Mlig455_030634 {REF} {Length: 1514} {Pfam: Cadherin domain [PF00028.19, score=251.4]} {Human: ENSG00000169851, PCDH7, protocadherin 7, [Score=236, Expect=2e-63]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=263, Expect=2e-72]} {Dmel: FBgn0284247, ds, dachsous, [Score=207, Expect=1e-53]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=172, Expect=3e-43]} {Smed: dd_Smed_v6_17019_0_1, dd_Smed_v6_17019_0_1, [Score=290, Expect=8e-83]} {RNA1509_5672} {RNA1310_54671.1} {RNA815_2173}
8. MligTC455_42396 33 0.68 Mlig455_046642

Neo: -

Age: -

 0.954 - - 0.954 - - - Mlig455_046642 {REF} {Length: 3316} {TRANSSPLICED} {RNA1509_47486} {RNA1310_45171} {RNA815_36801}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA