TomoSeq data search

Data search

Results for MligTC455_29640

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_29640

596

12.43

Mlig455_050194, Mlig455_066982

Neo: -

Age: logFC(26M/2M)=0.658

RBCK1

Mlig455_050194 {REF} {Length: 2986} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=45.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=18.5]} {Human: ENSG00000125826, RBCK1, RANBP2-type and C3HC4-type zinc finger containing 1, [Score=54.7, Expect=6e-07]} {Celegans: WBGene00013538, tag-349, [Score=91.3, Expect=6e-19]} {Smed: dd_Smed_v6_3281_0_1, dd_Smed_v6_3281_0_1, [Score=97.8, Expect=1e-20]} {RNA1509_36456} {RNA1310_5418} {RNA815_1642}

Mlig455_066982 {REF} {Length: 3000} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=44.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=18.7]} {Human: ENSG00000125826, RBCK1, RANBP2-type and C3HC4-type zinc finger containing 1, [Score=52.8, Expect=2e-06]} {Celegans: WBGene00013538, tag-349, [Score=90.5, Expect=1e-18]} {Smed: dd_Smed_v6_3281_0_1, dd_Smed_v6_3281_0_1, [Score=99.4, Expect=4e-21]} {RNA1509_36456} {RNA1310_5418} {RNA815_1642}

Cumulative graph for MligTC455_29640

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.424	4.008	0.73137	1.00000
RegionR2	0.175	4.008	0.76243	1.00000
RegionR3	0.632	4.008	0.17400	0.70062
RegionR4	0.424	4.008	0.45302	0.78177
RegionR5	-0.308	4.008	0.51350	0.87650
RegionR6	-0.627	4.008	0.23487	0.81841
RegionR7	0.111	4.008	0.85863	1.00000
RegionR8	-0.831	4.008	0.34347	0.97649

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.916	4.008	0.61398	1.00000
RegenerationR2	1.097	4.008	0.02588	0.26570
RegenerationR3	0.441	4.008	0.41136	0.80953
RegenerationR4	0.628	4.008	0.26712	0.71447
RegenerationR5	1.11	4.008	0.03660	0.31724
RegenerationR6	1.092	4.008	0.06574	0.32178
RegenerationBL	0.874	4.008	0.17096	0.49588
RegenerationTP	1.53	4.008	0.02284	0.25651

Genes with expression patterns similar to MligTC455_29640

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_29640	596	12.43	Mlig455_050194, Mlig455_066982	Neo: - Age: logFC(26M/2M)=0.658	RBCK1	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_050194 {REF} {Length: 2986} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=45.3]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=18.5]} {Human: ENSG00000125826, RBCK1, RANBP2-type and C3HC4-type zinc finger containing 1, [Score=54.7, Expect=6e-07]} {Celegans: WBGene00013538, tag-349, [Score=91.3, Expect=6e-19]} {Smed: dd_Smed_v6_3281_0_1, dd_Smed_v6_3281_0_1, [Score=97.8, Expect=1e-20]} {RNA1509_36456} {RNA1310_5418} {RNA815_1642} Mlig455_066982 {REF} {Length: 3000} {Pfam: IBR domain, a half RING-finger domain [PF01485.23, score=44.8]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=18.7]} {Human: ENSG00000125826, RBCK1, RANBP2-type and C3HC4-type zinc finger containing 1, [Score=52.8, Expect=2e-06]} {Celegans: WBGene00013538, tag-349, [Score=90.5, Expect=1e-18]} {Smed: dd_Smed_v6_3281_0_1, dd_Smed_v6_3281_0_1, [Score=99.4, Expect=4e-21]} {RNA1509_36456} {RNA1310_5418} {RNA815_1642}
2.	MligTC455_25799	138	2.87	Mlig455_052371	Neo: - Age: -	NYNRIN	1.738	0.955	-	-	-	-	0.783	Mlig455_052371 {REF} {Length: 5640} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=110.2]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=101.2]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=81.4]; Integrase core domain [PF00665.28, score=54.4]; gag-polyprotein putative aspartyl protease [PF13975.8, score=25.6]; Retroviral aspartyl protease [PF00077.22, score=21.4]; Aspartyl protease [PF13650.8, score=21.1]} {Human: ENSG00000205978, NYNRIN, NYN domain and retroviral integrase containing, [Score=56.6, Expect=3e-07]} {Mouse: ENSMUSG00000098639, Rtl1, retrotransposon Gaglike 1, [Score=96.3, Expect=2e-19]; ENSMUSG00000085925, Rtl1, retrotransposon Gaglike 1, [Score=96.3, Expect=2e-19]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=247, Expect=1e-67]} {RNA1509_41126} {RNA1310_3178} {RNA815_4850.1}
3.	MligTC455_55962	215	4.49	Mlig455_005420	Neo: - Age: -		1.682	0.954	-	-	-	-	0.728	Mlig455_005420 {REF} {Length: 1} {TRANSSPLICED} {NoTransDecoderORF}
4.	MligTC455_29643	476	9.92	Mlig455_015609	Neo: - Age: -		0.969	-	-	-	-	-	0.969	Mlig455_015609 {REF} {Length: 922} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_35005, RNA1509_48039} {RNA1310_189.1, RNA1509_35005} {RNA1509_35005, RNA815_19856}
5.	MligTC455_49016	110	2.29	Mlig455_025034, Mlig455_065988	Neo: - Age: logFC(26M/2M)=-0.406	PCDH1	0.968	0.968	-	-	-	-	-	Mlig455_025034 {REF} {Length: 5652} {Pfam: Cadherin domain [PF00028.19, score=198.4]; Cadherin-like [PF16184.7, score=48.8]} {Human: ENSG00000156453, PCDH1, protocadherin 1, [Score=177, Expect=1e-44]; ENSG00000166341, DCHS1, dachsous cadherin-related 1, [Score=175, Expect=1e-43]; ENSG00000284227, DCHS2, dachsous cadherin-related 2, [Score=174, Expect=2e-43]; ENSG00000197410, DCHS2, dachsous cadherin-related 2, [Score=174, Expect=2e-43]} {Mouse: ENSMUSG00000051375, Pcdh1, protocadherin 1, [Score=176, Expect=2e-44]} {Dmel: FBgn0024836, stan, starry night, [Score=175, Expect=9e-44]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=130, Expect=5e-30]} {Smed: dd_Smed_v6_14523_0_1, dd_Smed_v6_14523_0_1, [RH, Score=225, Expect=2e-60]} {RNA1509_48919} {RNA1310_32183} {RNA815_36929} Mlig455_065988 {REF} {Length: 5231} {RNA1509_48919} {RNA1310_32183, RNA1509_48919} {RNA1509_48919, RNA815_36929}
6.	MligTC455_26735	132	2.75	Mlig455_062257	Neo: - Age: Down-Up-Up	PGR	0.959	-	-	-	-	-	0.959	Mlig455_062257 {REF} {Length: 2391} {TRANSSPLICED} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=68.5]; Ligand-binding domain of nuclear hormone receptor [PF00104.32, score=63.4]} {Human: ENSG00000082175, PGR, progesterone receptor, [Score=107, Expect=4e-24]; ENSG00000113580, NR3C1, nuclear receptor subfamily 3 group C member 1, [Score=107, Expect=2e-24]; ENSG00000119715, ESRRB, estrogen related receptor beta, [Score=102, Expect=3e-23]} {Mouse: ENSMUSG00000031870, Pgr, progesterone receptor, [Score=111, Expect=7e-26]; ENSMUSG00000024431, Nr3c1, nuclear receptor subfamily 3, group C, member 1, [Score=110, Expect=2e-25]} {Dmel: FBgn0035849, ERR, estrogen-related receptor, [Score=102, Expect=2e-23]} {Celegans: WBGene00003622, nhr-23, Nuclear hormone receptor family member nhr-23, [Score=82.4, Expect=8e-17]} {Smed: dd_Smed_v6_10427_0_1, dd_Smed_v6_10427_0_1, [Score=85.5, Expect=9e-18]} {RNA1509_24832} {RNA1310_23073.1} {RNA815_12901}
7.	MligTC455_26631	202	4.2	Mlig455_001720	Neo: - Age: Down-Down-Up, logFC(26M/2M)=-0.355		0.957	0.957	-	-	-	-	-	Mlig455_001720 {REF} {Length: 1915} {RNA1509_23492} {RNA1310_19169.1, RNA1509_23492} {RNA1509_23492, RNA815_11654}
8.	MligTC455_26309	196	4.08	Mlig455_042028	Neo: - Age: Up-Down-Up	NAPA	0.955	0.955	-	-	-	-	-	Mlig455_042028 {REF} {Length: 1969} {TRANSSPLICED} {Pfam: Soluble NSF attachment protein, SNAP [PF14938.8, score=172.8]; Tetratricopeptide repeat [PF13424.8, score=22.3]} {Human: ENSG00000105402, NAPA, NSF attachment protein alpha, [Score=84.7, Expect=2e-18]} {Dmel: FBgn0250791, alphaSnap, alpha Soluble NSF attachment protein, [Score=59.7, Expect=6e-10]} {Celegans: WBGene00017016, snap-1, SNAP (Soluble NSF Attachment Protein) homolog, [Score=129, Expect=2e-35]} {Smed: dd_Smed_v6_2480_0_1, dd_Smed_v6_2480_0_1, [Score=110, Expect=2e-28]} {RNA1509_25414} {RNA1310_23320} {RNA815_19489}
9.	MligTC455_31832	387	8.06	Mlig455_016110	Neo: - Age: Down-Up-Down	RNF11	0.955	0.955	-	-	-	-	-	Mlig455_016110 {REF} {Length: 6352} {Pfam: Ring finger domain [PF13639.8, score=46.9]; RING-like zinc finger [PF17123.7, score=41.3]; Zinc finger, C3HC4 type (RING finger) [PF13923.8, score=31.9]; Zinc finger, C3HC4 type (RING finger) [PF00097.27, score=31.6]; RING-type zinc-finger [PF13445.8, score=30.2]; RING-H2 zinc finger domain [PF12678.9, score=28.4]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=27.4]; zinc-RING finger domain [PF14634.8, score=26.9]; Prokaryotic RING finger family 4 [PF14447.8, score=21.8]; Zinc-ribbon, C4HC2 type [PF17120.7, score=21.6]} {Human: ENSG00000123091, RNF11, ring finger protein 11, [Score=92.4, Expect=6e-25]} {Mouse: ENSMUSG00000028557, Rnf11, ring finger protein 11, [Score=92.4, Expect=4e-25]} {Dmel: FBgn0052850, CG32850, [Score=81.3, Expect=5e-21]} {Celegans: WBGene00007226, C01G6.4, [Score=84.7, Expect=4e-22]} {Smed: dd_Smed_v6_6913_0_1, dd_Smed_v6_6913_0_1, [Score=87.4, Expect=1e-22]} {RNA1509_26990} {RNA1310_6256} {RNA815_10502}
10.	MligTC455_16173	125	2.6	Mlig455_039164	Neo: - Age: -	PHLPP2	0.952	0.952	-	-	-	-	-	Mlig455_039164 {REF} {Length: 6351} {Pfam: Leucine rich repeat [PF13855.8, score=125.1]; Leucine Rich repeats (2 copies) [PF12799.9, score=95.0]; Protein phosphatase 2C [PF00481.23, score=72.3]; Leucine-rich repeat [PF14580.8, score=18.5]} {Human: ENSG00000040199, PHLPP2, PH domain and leucine rich repeat protein phosphatase 2, [Score=382, Expect=8e-111]; ENSG00000081913, PHLPP1, PH domain and leucine rich repeat protein phosphatase 1, [Score=367, Expect=5e-104]} {Mouse: ENSMUSG00000031732, Phlpp2, PH domain and leucine rich repeat protein phosphatase 2, [Score=375, Expect=2e-108]; ENSMUSG00000044340, Phlpp1, PH domain and leucine rich repeat protein phosphatase 1, [Score=370, Expect=3e-105]} {Dmel: FBgn0032749, Phlpp, PH domain leucine-rich repeat protein phosphatase, [Score=186, Expect=1e-47]} {Celegans: WBGene00009647, phlp-2, Protein phosphatase PHLPP-like protein, [Score=268, Expect=2e-73]} {Smed: dd_Smed_v6_5407_0_1, dd_Smed_v6_5407_0_1, [Score=104, Expect=3e-22]} {RNA1509_32447} {RNA1310_1676.1} {RNA815_1956}
11.	MligTC455_20418	213	4.45	Mlig455_003920	Neo: - Age: -		0.952	0.952	-	-	-	-	-	Mlig455_003920 {REF} {Length: 3500} {Pfam: Ring finger domain [PF13639.8, score=19.8]; Zinc finger, C3HC4 type (RING finger) [PF13920.8, score=18.9]} {RNA1509_20350, RNA1509_23231} {RNA1310_6875, RNA1509_20350, RNA1509_23231} {RNA1509_20350, RNA1509_23231, RNA815_2399.1}
12.	MligTC455_53297	599	12.48	Mlig455_060340	Neo: - Age: - Region-enriched R5: 1.053/0.00792	SBNO1	0.952	-	-	-	0.952	-	-	Mlig455_060340 {REF} {Length: 5381} {TRANSSPLICED} {Pfam: P-loop containing NTP hydrolase pore-1 [PF13872.8, score=425.0]; C-terminal domain on Strawberry notch homologue [PF13871.8, score=375.0]; Type III restriction enzyme, res subunit [PF04851.17, score=23.7]} {Human: ENSG00000139697, SBNO1, strawberry notch homolog 1, [RH, Score=605, Expect=0.0]} {Mouse: ENSMUSG00000035673, Sbno2, strawberry notch 2, [RH, Score=887, Expect=0.0]} {Dmel: FBgn0265630, sno, strawberry notch, [RH, Score=613, Expect=0.0]} {Celegans: WBGene00002889, let-765, Notch signaling pathway homolog-1, [RH, Score=598, Expect=0.0]} {Smed: dd_Smed_v6_10374_0_1, dd_Smed_v6_10374_0_1, [RH, Score=784, Expect=0.0]} {RNA1509_27217, RNA1509_9611} {RNA1310_1528.1, RNA1509_27217, RNA1509_9611} {RNA1509_27217, RNA1509_9611, RNA815_6895}
13.	MligTC455_42950	1497	31.18	Mlig455_013745	Neo: - Age: -	ATG101	0.951	0.951	-	-	-	-	-	Mlig455_013745 {REF} {Length: 2693} {TRANSSPLICED} {Pfam: Autophagy-related protein 101 [PF07855.14, score=97.1]} {Human: ENSG00000123395, ATG101, autophagy related 101, [RH, Score=131, Expect=1e-37]} {Mouse: ENSMUSG00000037204, Atg101, autophagy related 101, [RH, Score=129, Expect=5e-37]} {Dmel: FBgn0030960, Atg101, Autophagy-related 101, [RH, Score=162, Expect=1e-49]} {Smed: dd_Smed_v6_7828_0_1, dd_Smed_v6_7828_0_1, [RH, Score=106, Expect=3e-28]} {RNA1509_36275, RNA1509_40949, RNA1509_53122} {RNA1310_23009.1, RNA1509_36275, RNA1509_40949, RNA1509_53122} {RNA1509_36275, RNA1509_40949, RNA1509_53122, RNA815_16172}
14.	MligTC455_15980	406	8.46	Mlig455_013591	Neo: - Age: Down-Up-Down Regeneration-downregulated R2: -2.333 Regeneration-depleted R2: -2.333	DTX3	0.95	0.950	-	-	-	-	-	Mlig455_013591 {REF} {Length: 2199} {Pfam: Deltex C-terminal domain [PF18102.3, score=160.6]} {Human: ENSG00000178498, DTX3, deltex E3 ubiquitin ligase 3, [RH, Score=171, Expect=2e-47]} {Mouse: ENSMUSG00000040415, Dtx3, deltex 3, E3 ubiquitin ligase, [RH, Score=172, Expect=4e-48]} {Dmel: FBgn0000524, dx, deltex, [RH, Score=112, Expect=9e-26]} {RNA1509_9227} {RNA1310_163.1} {RNA815_1571}

Berezikov Lab - 2020-2021 © ERIBA