M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_29715

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_29715 80 1.66 Mlig455_007411, Mlig455_035206, Mlig455_067683

Neo: -

Age: -

Mlig455_007411 {REF} {Length: 2309} {Pfam: SAP domain [PF02037.29, score=34.5]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=57.0, Expect=7e-08]} {RNA1509_10113} {RNA1310_19548} {RNA815_12576}

Mlig455_035206 {REF} {Length: 2309} {Pfam: SAP domain [PF02037.29, score=34.5]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=57.0, Expect=7e-08]} {RNA1509_10113} {RNA1310_19548} {RNA815_12576}

Mlig455_067683 {REF} {Length: 5073} {Pfam: SAP domain [PF02037.29, score=34.0]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=58.5, Expect=3e-08]} {RNA1509_10113} {RNA1310_18744} {RNA815_12576}

Cumulative graph for MligTC455_29715

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -3.198 1.752 0.57685 1.00000
RegionR2 1.446 1.752 0.22465 0.59488
RegionR3 0.271 1.752 0.75897 1.00000
RegionR4 0.354 1.752 0.71575 1.00000
RegionR5 -0.667 1.752 0.97507 1.00000
RegionR6 0.321 1.752 0.74028 1.00000
RegionR7 0.974 1.752 0.51390 1.00000
RegionR8 0.5 1.752 0.77071 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.939 1.752 0.99991 1.00000
RegenerationR2 0.233 1.752 0.70950 0.95967
RegenerationR3 0.637 1.752 0.46262 0.83943
RegenerationR4 0.362 1.752 0.67580 0.94421
RegenerationR5 0.135 1.752 0.86922 1.00000
RegenerationR6 -1.583 1.752 0.13972 0.45824
RegenerationBL -0.309 1.752 0.81122 1.00000
RegenerationTP 1.268 1.752 0.31049 0.75523


Genes with expression patterns similar to MligTC455_29715

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_29715 80 1.66 Mlig455_007411, Mlig455_035206, Mlig455_067683

Neo: -

Age: -

 4 - - 1.000 1.000 1.000 1.000

Mlig455_007411 {REF} {Length: 2309} {Pfam: SAP domain [PF02037.29, score=34.5]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=57.0, Expect=7e-08]} {RNA1509_10113} {RNA1310_19548} {RNA815_12576}

Mlig455_035206 {REF} {Length: 2309} {Pfam: SAP domain [PF02037.29, score=34.5]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=57.0, Expect=7e-08]} {RNA1509_10113} {RNA1310_19548} {RNA815_12576}

Mlig455_067683 {REF} {Length: 5073} {Pfam: SAP domain [PF02037.29, score=34.0]} {Mouse: ENSMUSG00000024246, Thumpd2, THUMP domain containing 2, [Score=58.5, Expect=3e-08]} {RNA1509_10113} {RNA1310_18744} {RNA815_12576}
2. MligTC455_02856 53 1.1 Mlig455_000236, Mlig455_058498

Neo: -

Age: Down-Up-Up

 B3GNT4, B3GNT6 1.682 - - - - 0.729 0.953

Mlig455_000236 {REF} {Length: 881} {Pfam: Galactosyltransferase [PF01762.23, score=37.0]} {Human: ENSG00000176383, B3GNT4, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4, [Score=54.7, Expect=2e-08]} {Mouse: ENSMUSG00000074004, B3gnt6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase), [Score=50.8, Expect=2e-07]} {Dmel: FBgn0035558, CG11357, [Score=56.2, Expect=3e-09]} {Smed: dd_Smed_v6_4748_0_1, dd_Smed_v6_4748_0_1, [Score=67.8, Expect=1e-13]} {RNA1310_46446} {RNA815_58184}

Mlig455_058498 {REF} {Length: 1681} {Pfam: Galactosyltransferase [PF01762.23, score=143.0]; Fringe-like [PF02434.18, score=22.3]} {Human: ENSG00000198488, B3GNT6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6, [Score=123, Expect=6e-31]; ENSG00000172318, B3GALT1, beta-1,3-galactosyltransferase 1, [Score=119, Expect=8e-30]} {Mouse: ENSMUSG00000074004, B3gnt6, UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase), [Score=123, Expect=6e-31]; ENSMUSG00000034780, B3galt1, UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1, [Score=119, Expect=5e-30]} {Dmel: FBgn0035558, CG11357, [Score=157, Expect=2e-43]} {Celegans: WBGene00011659, T09E11.10, Hexosyltransferase, [Score=58.2, Expect=3e-09]} {Smed: dd_Smed_v6_4748_0_1, dd_Smed_v6_4748_0_1, [Score=201, Expect=3e-61]} {RNA1509_17403} {RNA1310_46446} {RNA815_28728}
3. MligTC455_18487 36 0.75 Mlig455_004379

Neo: -

Age: -

 1.681 - - 0.710 - - 0.971 Mlig455_004379 {REF} {Length: 1362} {RNA1310_54189}
4. MligTC455_14182 150 3.13 Mlig455_003006, Mlig455_036415

Neo: -

Age: -

Region-enriched R6: 2.786/0.02716

 KCNJ12 0.969 - - - - - 0.969

Mlig455_003006 {REF} {Length: 3092} {Pfam: Inward rectifier potassium channel C-terminal domain [PF17655.3, score=231.8]; Inward rectifier potassium channel transmembrane domain [PF01007.22, score=196.1]; Ion channel [PF07885.18, score=19.6]} {Human: ENSG00000184185, KCNJ12, potassium voltage-gated channel subfamily J member 12, [RH, Score=379, Expect=5e-128]; ENSG00000260458, KCNJ18, potassium voltage-gated channel subfamily J member 18, [RH, Score=375, Expect=1e-126]; ENSG00000157542, KCNJ6, potassium voltage-gated channel subfamily J member 6, [RH, Score=370, Expect=9e-125]} {Mouse: ENSMUSG00000042529, Kcnj12, potassium inwardly-rectifying channel, subfamily J, member 12, [RH, Score=380, Expect=2e-127]; ENSMUSG00000043301, Kcnj6, potassium inwardly-rectifying channel, subfamily J, member 6, [RH, Score=370, Expect=4e-125]} {Dmel: FBgn0265042, Irk1, Inwardly rectifying potassium channel 1, [RH, Score=405, Expect=4e-137]} {Celegans: WBGene00002150, irk-2, Inward Rectifying K (Potassium) channel family, [RH, Score=384, Expect=4e-130]} {RNA1509_51986} {RNA1310_33919} {RNA815_28373}

Mlig455_036415 {REF} {Length: 3049} {Pfam: Inward rectifier potassium channel C-terminal domain [PF17655.3, score=231.8]; Inward rectifier potassium channel transmembrane domain [PF01007.22, score=196.1]; Ion channel [PF07885.18, score=19.6]} {Human: ENSG00000184185, KCNJ12, potassium voltage-gated channel subfamily J member 12, [RH, Score=379, Expect=4e-128]; ENSG00000260458, KCNJ18, potassium voltage-gated channel subfamily J member 18, [RH, Score=375, Expect=7e-127]; ENSG00000157542, KCNJ6, potassium voltage-gated channel subfamily J member 6, [RH, Score=372, Expect=1e-125]} {Mouse: ENSMUSG00000042529, Kcnj12, potassium inwardly-rectifying channel, subfamily J, member 12, [RH, Score=380, Expect=1e-127]; ENSMUSG00000043301, Kcnj6, potassium inwardly-rectifying channel, subfamily J, member 6, [RH, Score=372, Expect=9e-126]} {Dmel: FBgn0265042, Irk1, Inwardly rectifying potassium channel 1, [RH, Score=406, Expect=4e-136]} {Celegans: WBGene00002150, irk-2, Inward Rectifying K (Potassium) channel family, [RH, Score=385, Expect=2e-130]} {RNA1509_23312} {RNA1310_33919} {RNA815_28373}
5. MligTC455_41920 49 1.01 Mlig455_048072

Neo: -

Age: -

 0.966 - - - - - 0.966 Mlig455_048072 {REF} {Length: 2492} {Pfam: Innexin [PF00876.20, score=330.4]} {Dmel: FBgn0265274, Inx3, Innexin 3, [Score=88.6, Expect=1e-18]} {Celegans: WBGene00006749, unc-9, Innexin unc-9, [Score=254, Expect=8e-80]} {Smed: dd_Smed_v6_8019_0_1, dd_Smed_v6_8019_0_1, [Score=296, Expect=3e-95]} {RNA1509_56200} {RNA1310_9243} {RNA815_4486.1}
6. MligTC455_21665 1283 26.74 Mlig455_000443, Mlig455_000504

Neo: -

Age: logFC(26M/2M)=-0.231

Region-specific R2: 3.326

Region-enriched R2: 2.174/0.00141

 PPP3R1 0.956 - - - - - 0.956

Mlig455_000443 {REF} {Length: 1489} {Pfam: EF hand [PF00036.34, score=92.6]; EF-hand domain pair [PF13499.8, score=86.6]; EF-hand domain [PF13405.8, score=74.3]; EF hand [PF13202.8, score=72.6]; EF-hand domain pair [PF13833.8, score=65.7]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=30.2]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=27.0]; EF-hand domain [PF14658.8, score=21.7]} {Human: ENSG00000221823, PPP3R1, protein phosphatase 3 regulatory subunit B, alpha, [RH, Score=289, Expect=5e-101]} {Mouse: ENSMUSG00000033953, Ppp3r1, protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I), [RH, Score=289, Expect=3e-101]} {Dmel: FBgn0010014, CanB, Calcineurin B, [RH, Score=282, Expect=1e-98]} {Celegans: WBGene00000554, cnb-1, Protein phosphatase 2B regulatory subunit cnb-1, [RH, Score=272, Expect=7e-95]} {Smed: dd_Smed_v6_5589_0_1, dd_Smed_v6_5589_0_1, [RH, Score=281, Expect=1e-98]} {RNA1509_14613, RNA1509_39549} {RNA1310_16848.2, RNA1509_14613, RNA1509_39549} {RNA1509_14613, RNA1509_39549, RNA815_6272}

Mlig455_000504 {REF} {Length: 1689} {Pfam: EF hand [PF00036.34, score=90.0]; EF-hand domain pair [PF13499.8, score=84.5]; EF-hand domain [PF13405.8, score=71.9]; EF hand [PF13202.8, score=69.8]; EF-hand domain pair [PF13833.8, score=63.4]; Cytoskeletal-regulatory complex EF hand [PF12763.9, score=28.7]; Secreted protein acidic and rich in cysteine Ca binding region [PF10591.11, score=25.4]; EF-hand domain [PF14658.8, score=19.6]} {Human: ENSG00000221823, PPP3R1, protein phosphatase 3 regulatory subunit B, alpha, [RH, Score=290, Expect=2e-100]} {Mouse: ENSMUSG00000033953, Ppp3r1, protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I), [RH, Score=290, Expect=1e-100]} {Dmel: FBgn0010014, CanB, Calcineurin B, [RH, Score=283, Expect=4e-98]} {Celegans: WBGene00000554, cnb-1, Protein phosphatase 2B regulatory subunit cnb-1, [RH, Score=274, Expect=3e-94]} {Smed: dd_Smed_v6_5589_0_1, dd_Smed_v6_5589_0_1, [RH, Score=283, Expect=3e-98]} {RNA1509_39549} {RNA1310_16848.2} {RNA815_6272}
7. MligTC455_25731 74 1.54 Mlig455_000544

Neo: -

Age: logFC(26M/2M)=0.659

 GATA3 0.955 - - - - - 0.955 Mlig455_000544 {REF} {Length: 2668} {Pfam: GATA zinc finger [PF00320.29, score=94.0]} {Human: ENSG00000107485, GATA3, GATA binding protein 3, [RH, Score=211, Expect=2e-61]; ENSG00000179348, GATA2, GATA binding protein 2, [RH, Score=209, Expect=2e-60]; ENSG00000136574, GATA4, GATA binding protein 4, [RH, Score=202, Expect=3e-58]; ENSG00000285109, GATA4, GATA binding protein 4, [RH, Score=202, Expect=3e-58]} {Mouse: ENSMUSG00000015619, Gata3, GATA binding protein 3, [RH, Score=211, Expect=2e-61]; ENSMUSG00000015053, Gata2, GATA binding protein 2, [RH, Score=209, Expect=1e-60]; ENSMUSG00000021944, Gata4, GATA binding protein 4, [RH, Score=204, Expect=4e-59]} {Dmel: FBgn0001138, grn, grain, [RH, Score=214, Expect=1e-60]} {Celegans: WBGene00001249, elt-1, Transcription factor elt-1, [RH, Score=202, Expect=7e-58]} {Smed: dd_Smed_v6_8208_0_1, dd_Smed_v6_8208_0_1, [RH, Score=218, Expect=9e-65]} {RNA1509_33133} {RNA1310_42126} {RNA815_46985}
8. MligTC455_40455 127 2.65 Mlig455_009056, Mlig455_058128

Neo: -

Age: -

 SSTR5 0.954 - - - - - 0.954

Mlig455_009056 {REF} {Length: 1996} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=54.2]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=43.9]} {Human: ENSG00000162009, SSTR5, somatostatin receptor 5, [Score=53.5, Expect=4e-07]} {Dmel: FBgn0029768, SPR, Sex peptide receptor, [Score=58.9, Expect=4e-09]} {Celegans: WBGene00018728, frpr-8, FMRFamide Peptide Receptor family, [Score=86.7, Expect=3e-18]} {Smed: dd_Smed_v6_21549_0_1, dd_Smed_v6_21549_0_1, [RH, Score=207, Expect=5e-63]} {RNA1310_15928} {RNA815_7937}

Mlig455_058128 {REF} {Length: 2339} {Pfam: Serpentine type 7TM GPCR chemoreceptor Srw [PF10324.11, score=54.2]; 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=43.9]} {Human: ENSG00000162009, SSTR5, somatostatin receptor 5, [Score=53.5, Expect=4e-07]} {Dmel: FBgn0029768, SPR, Sex peptide receptor, [Score=58.9, Expect=4e-09]} {Celegans: WBGene00018728, frpr-8, FMRFamide Peptide Receptor family, [Score=86.7, Expect=3e-18]} {Smed: dd_Smed_v6_21549_0_1, dd_Smed_v6_21549_0_1, [RH, Score=207, Expect=5e-63]} {RNA1310_15928} {RNA815_7937}
9. MligTC455_47226 202 4.22 Mlig455_012306

Neo: -

Age: -

Region-enriched R4: 2.582/0.02845

 0.953 - - - - - 0.953 Mlig455_012306 {REF} {Length: 1104} {Celegans: WBGene00021577, Y46B2A.2, [Score=45.4, Expect=8e-07]} {Smed: dd_Smed_v6_49255_0_1, dd_Smed_v6_49255_0_1, [Score=44.3, Expect=3e-07]} {RNA1509_48023} {RNA1310_18058} {RNA815_356.1}
10. MligTC455_51947 234 4.87 Mlig455_048043, Mlig455_048063

Neo: -

Age: Down-Up-Down

Regeneration-downregulated R4: -3.965

Regeneration-depleted R4: -3.965

 NPFFR2 0.951 - - - - - 0.951

Mlig455_048043 {REF} {Length: 2655} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=149.4]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=28.0]} {Human: ENSG00000056291, NPFFR2, neuropeptide FF receptor 2, [Score=136, Expect=8e-35]; ENSG00000164128, NPY1R, neuropeptide Y receptor Y1, [Score=130, Expect=5e-33]} {Mouse: ENSMUSG00000048337, Npy4r, neuropeptide Y receptor Y4, [Score=134, Expect=2e-34]; ENSMUSG00000035528, Npffr2, neuropeptide FF receptor 2, [Score=134, Expect=3e-34]; ENSMUSG00000036437, Npy1r, neuropeptide Y receptor Y1, [Score=130, Expect=5e-33]; ENSMUSG00000038071, Npy6r, neuropeptide Y receptor Y6, [Score=130, Expect=2e-33]} {Dmel: FBgn0037408, NPFR, Neuropeptide F receptor, [RH, Score=200, Expect=2e-58]} {Celegans: WBGene00016110, npr-11, Putative neuropeptide Y receptor 11, [RH, Score=164, Expect=9e-46]} {Smed: dd_Smed_v6_16725_0_1, dd_Smed_v6_16725_0_1, [RH, Score=266, Expect=8e-84]} {RNA1509_49794} {RNA1310_30047.1} {RNA815_32644}

Mlig455_048063 {REF} {Length: 2727} {Pfam: 7 transmembrane receptor (rhodopsin family) [PF00001.23, score=149.4]; Serpentine type 7TM GPCR chemoreceptor Srsx [PF10320.11, score=28.0]} {Human: ENSG00000056291, NPFFR2, neuropeptide FF receptor 2, [Score=136, Expect=7e-35]; ENSG00000164128, NPY1R, neuropeptide Y receptor Y1, [Score=130, Expect=8e-33]} {Mouse: ENSMUSG00000035528, Npffr2, neuropeptide FF receptor 2, [Score=134, Expect=3e-34]; ENSMUSG00000048337, Npy4r, neuropeptide Y receptor Y4, [Score=134, Expect=1e-34]; ENSMUSG00000038071, Npy6r, neuropeptide Y receptor Y6, [Score=130, Expect=2e-33]; ENSMUSG00000036437, Npy1r, neuropeptide Y receptor Y1, [Score=129, Expect=5e-33]} {Dmel: FBgn0037408, NPFR, Neuropeptide F receptor, [RH, Score=200, Expect=3e-58]} {Celegans: WBGene00016110, npr-11, Putative neuropeptide Y receptor 11, [RH, Score=164, Expect=9e-46]} {Smed: dd_Smed_v6_16725_0_1, dd_Smed_v6_16725_0_1, [RH, Score=266, Expect=7e-84]} {RNA1509_49794} {RNA1310_30047.1, RNA1509_49794} {RNA1509_49794, RNA815_32644}
11. MligTC455_34002 403 8.39 Mlig455_042149

Neo: -

Age: logFC(26M/2M)=-0.403

 0.95 - - - - - 0.950 Mlig455_042149 {REF} {Length: 1110} {RNA1509_23831, RNA1509_42660} {RNA1310_22331, RNA1509_42660} {RNA1509_42660, RNA815_2397.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA