M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_30184

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_30184 20964 436.75 Mlig455_037696

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.195

 RPL5 Mlig455_037696 {REF} {Length: 1029} {TRANSSPLICED} {Pfam: Ribosomal large subunit proteins 60S L5, and 50S L18 [PF17144.6, score=251.5]; Ribosomal L18 C-terminal region [PF14204.8, score=66.9]} {Human: ENSG00000122406, RPL5, ribosomal protein L5, [Score=350, Expect=2e-121]} {Mouse: ENSMUSG00000058558, Rpl5, ribosomal protein L5, [Score=335, Expect=9e-116]} {Dmel: FBgn0064225, RpL5, Ribosomal protein L5, [Score=371, Expect=8e-130]} {Celegans: WBGene00004416, rpl-5, 60S ribosomal protein L5, [Score=307, Expect=8e-105]} {Smed: dd_Smed_v6_151_0_1, dd_Smed_v6_151_0_1, [RH, Score=333, Expect=4e-115]} {RNA1509_3634} {RNA1310_31746.1} {RNA815_10534.1}

Cumulative graph for MligTC455_30184

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -0.877 8.853 0.01906 0.38486
RegionR2 -0.421 8.853 0.15577 0.49423
RegionR3 0.252 8.853 0.31963 0.85802
RegionR4 0.291 8.853 0.29813 0.61027
RegionR5 0.461 8.853 0.05834 0.20901
RegionR6 0.254 8.853 0.31441 0.90291
RegionR7 0.387 8.853 0.11659 0.64558
RegionR8 -0.347 8.853 0.21664 0.82124

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -0.767 8.853 0.10387 0.82393
RegenerationR2 -0.033 8.853 0.91967 1.00000
RegenerationR3 -0.133 8.853 0.68774 0.94327
RegenerationR4 -0.114 8.853 0.73717 0.96675
RegenerationR5 -0.559 8.853 0.08821 0.45735
RegenerationR6 -0.158 8.853 0.63248 0.88839
RegenerationBL -0.057 8.853 0.84058 1.00000
RegenerationTP -0.198 8.853 0.52129 0.91509


Genes with expression patterns similar to MligTC455_30184

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_30184 20964 436.75 Mlig455_037696

Neo: Int S/G2/M

Age: Down-Up-Up, logFC(26M/2M)=0.195

 RPL5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_037696 {REF} {Length: 1029} {TRANSSPLICED} {Pfam: Ribosomal large subunit proteins 60S L5, and 50S L18 [PF17144.6, score=251.5]; Ribosomal L18 C-terminal region [PF14204.8, score=66.9]} {Human: ENSG00000122406, RPL5, ribosomal protein L5, [Score=350, Expect=2e-121]} {Mouse: ENSMUSG00000058558, Rpl5, ribosomal protein L5, [Score=335, Expect=9e-116]} {Dmel: FBgn0064225, RpL5, Ribosomal protein L5, [Score=371, Expect=8e-130]} {Celegans: WBGene00004416, rpl-5, 60S ribosomal protein L5, [Score=307, Expect=8e-105]} {Smed: dd_Smed_v6_151_0_1, dd_Smed_v6_151_0_1, [RH, Score=333, Expect=4e-115]} {RNA1509_3634} {RNA1310_31746.1} {RNA815_10534.1}
2. MligTC455_25509 26793 558.19 Mlig455_025772, Mlig455_064419

Neo: Int S/G2/M

Age: Down-Up-Down, logFC(26M/2M)=1.947

 RPS23 0.956 - - - - - 0.956

Mlig455_025772 {REF} {Length: 576} {TRANSSPLICED} {Pfam: Ribosomal protein S12/S23 [PF00164.27, score=173.9]} {Human: ENSG00000186468, RPS23, ribosomal protein S23, [RH, Score=256, Expect=7e-89]} {Mouse: ENSMUSG00000049517, Rps23, ribosomal protein S23, [RH, Score=256, Expect=5e-89]} {Dmel: FBgn0033912, RpS23, Ribosomal protein S23, [RH, Score=257, Expect=1e-89]} {Celegans: WBGene00004492, rps-23, 40S ribosomal protein S23, [RH, Score=260, Expect=5e-91]} {Smed: dd_Smed_v6_290_0_1, dd_Smed_v6_290_0_1, [RH, Score=259, Expect=2e-90]} {RNA1509_6690} {RNA1310_17173.2} {RNA815_25860.2}

Mlig455_064419 {REF} {Length: 576} {TRANSSPLICED} {Pfam: Ribosomal protein S12/S23 [PF00164.27, score=173.9]} {Human: ENSG00000186468, RPS23, ribosomal protein S23, [RH, Score=256, Expect=7e-89]} {Mouse: ENSMUSG00000049517, Rps23, ribosomal protein S23, [RH, Score=256, Expect=5e-89]} {Dmel: FBgn0033912, RpS23, Ribosomal protein S23, [RH, Score=257, Expect=1e-89]} {Celegans: WBGene00004492, rps-23, 40S ribosomal protein S23, [RH, Score=260, Expect=5e-91]} {Smed: dd_Smed_v6_290_0_1, dd_Smed_v6_290_0_1, [RH, Score=259, Expect=2e-90]} {RNA1509_6690} {RNA1310_17173.2, RNA1509_6690} {RNA1509_6690, RNA815_25860.2}
3. MligTC455_19750 582 12.12 Mlig455_021184, Mlig455_021229

Neo: -

Age: -

 RFT1 0.955 - - - - 0.955 -

Mlig455_021184 {REF} {Length: 2259} {TRANSSPLICED} {Pfam: Rft protein [PF04506.15, score=318.5]} {Human: ENSG00000163933, RFT1, RFT1 homolog, [RH, Score=254, Expect=1e-76]} {Mouse: ENSMUSG00000052395, Rft1, RFT1 homolog, [RH, Score=259, Expect=2e-78]} {Dmel: FBgn0027564, CG3149, [RH, Score=144, Expect=1e-36]} {Celegans: WBGene00022677, ZK180.3, Protein RFT1 homolog, [RH, Score=166, Expect=2e-44]} {Smed: dd_Smed_v6_8987_0_1, dd_Smed_v6_8987_0_1, [RH, Score=143, Expect=2e-38]} {RNA1509_10166, RNA1509_57553} {RNA1310_14734.1, RNA1509_57553} {RNA1509_57553, RNA815_3414}

Mlig455_021229 {REF} {Length: 2615} {TRANSSPLICED} {Pfam: Rft protein [PF04506.15, score=320.3]} {Human: ENSG00000163933, RFT1, RFT1 homolog, [RH, Score=259, Expect=2e-78]} {Mouse: ENSMUSG00000052395, Rft1, RFT1 homolog, [RH, Score=261, Expect=3e-79]} {Dmel: FBgn0027564, CG3149, [RH, Score=145, Expect=1e-36]} {Celegans: WBGene00022677, ZK180.3, Protein RFT1 homolog, [RH, Score=169, Expect=2e-45]} {Smed: dd_Smed_v6_8987_0_1, dd_Smed_v6_8987_0_1, [RH, Score=148, Expect=5e-40]} {RNA1509_10166} {RNA1310_14734.1, RNA1509_10166} {RNA1509_10166, RNA815_3414}
4. MligTC455_24976 13333 277.77 Mlig455_018655

Neo: -

Age: logFC(26M/2M)=0.335

 RPL35A 0.95 - - - - - 0.950 Mlig455_018655 {REF} {Length: 512} {TRANSSPLICED} {Pfam: Ribosomal protein L35Ae [PF01247.20, score=148.2]; RimM N-terminal domain [PF01782.20, score=20.4]} {Human: ENSG00000182899, RPL35A, ribosomal protein L35a, [RH, Score=153, Expect=6e-49]} {Mouse: ENSMUSG00000060636, Rpl35a, ribosomal protein L35A, [RH, Score=154, Expect=2e-49]} {Dmel: FBgn0037328, RpL35A, Ribosomal protein L35A, [RH, Score=155, Expect=2e-49]} {Celegans: WBGene00004447, rpl-33, 60S ribosomal protein L35a, [RH, Score=144, Expect=2e-45]} {Smed: dd_Smed_v6_318_0_1, dd_Smed_v6_318_0_1, [RH, Score=158, Expect=4e-51]} {RNA1509_20915, RNA1509_2998, RNA1509_595} {RNA1310_35465, RNA1509_20915, RNA1509_2998, RNA1509_595} {RNA1509_20915, RNA1509_2998, RNA1509_595, RNA815_35386}
5. MligTC455_24977 13312 277.34 Mlig455_018857

Neo: Int S/G2/M

Age: -

 RPL35A 0.95 - - - - - 0.950 Mlig455_018857 {REF} {Length: 511} {TRANSSPLICED} {Pfam: Ribosomal protein L35Ae [PF01247.20, score=145.7]} {Human: ENSG00000182899, RPL35A, ribosomal protein L35a, [RH, Score=151, Expect=4e-48]} {Mouse: ENSMUSG00000060636, Rpl35a, ribosomal protein L35A, [RH, Score=152, Expect=2e-48]} {Dmel: FBgn0037328, RpL35A, Ribosomal protein L35A, [RH, Score=155, Expect=1e-49]} {Celegans: WBGene00004447, rpl-33, 60S ribosomal protein L35a, [RH, Score=139, Expect=9e-44]} {Smed: dd_Smed_v6_318_0_1, dd_Smed_v6_318_0_1, [RH, Score=154, Expect=2e-49]} {RNA1509_20915} {RNA1310_35465} {RNA815_35386}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA