TomoSeq data search

Data search

Results for MligTC455_30328

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_30328

71

1.47

Mlig455_029572, Mlig455_029573

Neo: -

Age: -

TRAF6

Mlig455_029572 {REF} {Length: 1229} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=54.4]; Acetyl-coA carboxylase zinc finger domain [PF17848.3, score=19.6]} {Human: ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=85.9, Expect=2e-18]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=87.0, Expect=5e-19]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [Score=77.0, Expect=5e-16]} {RNA1509_36404} {RNA1310_40308} {RNA815_9291}

Mlig455_029573 {REF} {Length: 4182} {Pfam: WD domain, G-beta repeat [PF00400.34, score=24.3]; TRAF-type zinc finger [PF02176.20, score=20.6]} {Human: ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=61.2, Expect=3e-09]} {Mouse: ENSMUSG00000026942, Traf2, TNF receptor-associated factor 2, [Score=67.0, Expect=4e-11]} {Smed: dd_Smed_v6_4392_0_1, dd_Smed_v6_4392_0_1, [Score=76.3, Expect=2e-14]} {RNA1509_16871} {RNA1310_29668} {RNA815_24518}

Cumulative graph for MligTC455_30328

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-7.403	1.663	0.08815	0.64041
RegionR2	2.382	1.663	0.06964	0.32105
RegionR3	1.74	1.663	0.09523	0.54239
RegionR4	-0.65	1.663	0.97179	1.00000
RegionR5	0.024	1.663	0.85165	1.00000
RegionR6	2.735	1.663	0.00322	0.08215
RegionR7	0.791	1.663	0.56220	1.00000
RegionR8	0.382	1.663	0.76555	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	1.912	1.663	0.99977	1.00000
RegenerationR2	-1.68	1.663	0.08533	0.46942
RegenerationR3	0.18	1.663	0.83471	0.99230
RegenerationR4	0.439	1.663	0.67645	0.94435
RegenerationR5	1.521	1.663	0.07644	0.43207
RegenerationR6	-0.396	1.663	0.67094	0.90904
RegenerationBL	-0.68	1.663	0.64930	0.98589
RegenerationTP	1.092	1.663	0.41366	0.83957

Genes with expression patterns similar to MligTC455_30328

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_30328	71	1.47	Mlig455_029572, Mlig455_029573	Neo: - Age: -	TRAF6	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_029572 {REF} {Length: 1229} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=54.4]; Acetyl-coA carboxylase zinc finger domain [PF17848.3, score=19.6]} {Human: ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=85.9, Expect=2e-18]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=87.0, Expect=5e-19]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [Score=77.0, Expect=5e-16]} {RNA1509_36404} {RNA1310_40308} {RNA815_9291} Mlig455_029573 {REF} {Length: 4182} {Pfam: WD domain, G-beta repeat [PF00400.34, score=24.3]; TRAF-type zinc finger [PF02176.20, score=20.6]} {Human: ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=61.2, Expect=3e-09]} {Mouse: ENSMUSG00000026942, Traf2, TNF receptor-associated factor 2, [Score=67.0, Expect=4e-11]} {Smed: dd_Smed_v6_4392_0_1, dd_Smed_v6_4392_0_1, [Score=76.3, Expect=2e-14]} {RNA1509_16871} {RNA1310_29668} {RNA815_24518}
2.	MligTC455_28649	93	1.94	Mlig455_048260	Neo: - Age: -	TRPM3	1.77	-	-	-	0.953	0.817	-	Mlig455_048260 {REF} {Length: 6001} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=77.0]; Ankyrin repeat [PF13606.8, score=68.0]; Ankyrin repeats (many copies) [PF13637.8, score=66.3]; Ankyrin repeat [PF00023.32, score=56.2]; Ion transport protein [PF00520.33, score=53.5]; Ankyrin repeats (many copies) [PF13857.8, score=45.8]} {Human: ENSG00000083067, TRPM3, transient receptor potential cation channel subfamily M member 3, [Score=158, Expect=2e-38]} {Mouse: ENSMUSG00000052387, Trpm3, transient receptor potential cation channel, subfamily M, member 3, [Score=162, Expect=1e-39]} {Dmel: FBgn0005614, trpl, transient receptor potential-like, [Score=80.1, Expect=1e-14]} {Celegans: WBGene00001796, gtl-2, Gon-Two Like (TRP subfamily), [Score=106, Expect=8e-23]} {Smed: dd_Smed_v6_8382_0_1, dd_Smed_v6_8382_0_1, [Score=194, Expect=4e-50]} {RNA1509_8039} {RNA1310_1471} {RNA815_562}
3.	MligTC455_17467	61	1.26	Mlig455_027717, Mlig455_047775	Neo: - Age: -		1.696	-	-	0.980	0.716	-	-	Mlig455_027717 {REF} {Length: 2355} {RNA1509_18336} {RNA1310_64274} {RNA815_36598} Mlig455_047775 {REF} {Length: 2352} {RNA1509_18336} {RNA1310_64274} {RNA815_36598}
4.	MligTC455_44246	480	9.99	Mlig455_054454	Neo: Neoblast, stringent Age: - Regeneration-enriched R5: 4.237 Regeneration-enriched R6: 3.317	ARHGAP19	0.975	-	-	-	0.975	-	-	Mlig455_054454 {REF} {Length: 2540} {Pfam: RhoGAP domain [PF00620.29, score=82.6]} {Human: ENSG00000213390, ARHGAP19, Rho GTPase activating protein 19, [RH, Score=97.4, Expect=8e-21]; ENSG00000269891, ARHGAP19-SLIT1, ARHGAP19-SLIT1 readthrough (NMD candidate), [RH, Score=97.4, Expect=8e-21]} {Mouse: ENSMUSG00000025154, Arhgap19, Rho GTPase activating protein 19, [RH, Score=97.4, Expect=5e-21]} {Dmel: FBgn0034249, RhoGAP54D, Rho GTPase activating protein at 54D, [RH, Score=118, Expect=2e-27]} {Celegans: WBGene00012203, rga-1, Rho GTPase Activating protein, [Score=60.8, Expect=4e-10]} {Smed: dd_Smed_v6_10070_0_1, dd_Smed_v6_10070_0_1, [Score=48.5, Expect=1e-05]} {RNA1509_58422} {RNA1310_12412.2, RNA1509_58422} {RNA1509_58422, RNA815_26910}
5.	MligTC455_35612	108	2.24	Mlig455_028477, Mlig455_028502	Neo: - Age: -		0.973	-	-	-	-	0.973	-	Mlig455_028477 {REF} {Length: 3097} {NoTransDecoderORF} {RNA1509_51981} {RNA1310_26650.1} {RNA815_19295} Mlig455_028502 {REF} {Length: 756} {NoTransDecoderORF} {RNA1509_5585} {RNA1310_103270} {RNA815_19295}
6.	MligTC455_50939	121	2.51	Mlig455_069347	Neo: - Age: Down-Up-Down		0.966	-	-	-	0.966	-	-	Mlig455_069347 {REF} {Length: 1851} {TRANSSPLICED} {RNA1509_55083} {RNA1310_23759} {RNA815_14866}
7.	MligTC455_25947	42	0.87	Mlig455_012640, Mlig455_012659	Neo: - Age: -		0.959	-	-	-	0.959	-	-	Mlig455_012640 {REF} {Length: 745} {NoTransDecoderORF} {RNA1310_44928} {RNA815_23085.1} Mlig455_012659 {REF} {Length: 745} {NoTransDecoderORF} {RNA1310_44928} {RNA815_23085.1}
8.	MligTC455_53073	7	0.15	Mlig455_057415	Neo: - Age: Up-Down-Down		0.957	-	-	-	-	0.957	-	Mlig455_057415 {REF} {Length: 2617} {RNA1509_13322} {RNA1310_1798.3} {RNA815_42960}
9.	MligTC455_34287	140	2.92	Mlig455_024072, Mlig455_057007	Neo: - Age: Down-Up-Up, logFC(26M/2M)=1.265		0.956	-	-	-	-	-	0.956	Mlig455_024072 {REF} {Length: 3008} {TRANSSPLICED} {Pfam: Domain of unknown function (DUF4371) [PF14291.8, score=33.9]; hAT family C-terminal dimerisation region [PF05699.16, score=30.6]} {Smed: dd_Smed_v6_17002_0_4, dd_Smed_v6_17002_0_4, [RH, Score=103, Expect=6e-23]} {RNA1509_53951} {RNA1310_1981} {RNA815_2490} Mlig455_057007 {REF} {Length: 1157} {TRANSSPLICED} {Pfam: hAT family C-terminal dimerisation region [PF05699.16, score=32.2]; PKC-activated protein phosphatase-1 inhibitor [PF05361.14, score=30.1]} {Dmel: FBgn0032297, CG17124, [Score=77.0, Expect=3e-17]} {Smed: dd_Smed_v6_6245_0_1, dd_Smed_v6_6245_0_1, [Score=66.6, Expect=1e-13]} {RNA1509_53951} {RNA1310_1981} {RNA815_2490}
10.	MligTC455_28813	218	4.54	Mlig455_019156	Neo: - Age: logFC(26M/2M)=0.373		0.954	-	-	-	-	0.954	-	Mlig455_019156 {REF} {Length: 2511} {TRANSSPLICED} {RNA1509_7400} {RNA1310_16040.1} {RNA815_8063.1}
11.	MligTC455_37043	353	7.35	Mlig455_069044	Neo: Int S/G2/M Age: -	RFC5	0.952	-	-	-	0.952	-	-	Mlig455_069044 {REF} {Length: 2372} {TRANSSPLICED} {Pfam: Replication factor C C-terminal domain [PF08542.13, score=59.1]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=57.0]; DNA polymerase III, delta subunit [PF13177.8, score=52.5]; Rad17 P-loop domain [PF03215.17, score=28.7]; AAA domain [PF13401.8, score=23.9]; AAA C-terminal domain [PF16193.7, score=23.4]; AAA ATPase domain [PF13191.8, score=21.9]; AAA domain [PF13173.8, score=19.4]; AAA domain [PF13604.8, score=18.9]} {Human: ENSG00000111445, RFC5, replication factor C subunit 5, [RH, Score=411, Expect=1e-143]} {Mouse: ENSMUSG00000029363, Rfc5, replication factor C (activator 1) 5, [RH, Score=413, Expect=8e-145]} {Dmel: FBgn0032244, RfC3, Replication factor C subunit 3, [RH, Score=379, Expect=1e-131]} {Celegans: WBGene00018409, F44B9.8, Probable replication factor C subunit 5, [RH, Score=327, Expect=1e-110]} {Smed: dd_Smed_v6_5504_0_1, dd_Smed_v6_5504_0_1, [RH, Score=359, Expect=6e-124]} {RNA1509_20013} {RNA1310_24005, RNA1509_20013} {RNA1509_20013, RNA815_8700}

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