M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_53073

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_53073 7 0.15 Mlig455_057415

Neo: -

Age: Up-Down-Down

 Mlig455_057415 {REF} {Length: 2617} {RNA1509_13322} {RNA1310_1798.3} {RNA815_42960}

Cumulative graph for MligTC455_53073

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_53073

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_53073 7 0.15 Mlig455_057415

Neo: -

Age: Up-Down-Down

 2 - - - - 1.000 1.000 Mlig455_057415 {REF} {Length: 2617} {RNA1509_13322} {RNA1310_1798.3} {RNA815_42960}
2. MligTC455_03252 21 0.44 Mlig455_048683

Neo: -

Age: -

 1.797 - - - - 0.976 0.821 Mlig455_048683 {REF} {Length: 419} {NoTransDecoderORF} {RNA1509_34103} {RNA1310_15969} {RNA815_36583.1}
3. MligTC455_09946 9 0.19 Mlig455_068386

Neo: -

Age: -

 ECE2 1.766 - - - - 0.977 0.789 Mlig455_068386 {REF} {Length: 3943} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=127.5]; Peptidase family M13 [PF01431.23, score=111.7]; Peptidase family M13 [PF05649.15, score=23.9]} {Human: ENSG00000145194, ECE2, endothelin converting enzyme 2, [Score=84.0, Expect=1e-15]; ENSG00000284917, EEF1AKMT4-ECE2, EEF1AKMT4-ECE2 readthrough, [Score=83.6, Expect=1e-15]; ENSG00000276615, KEL, Kell metallo-endopeptidase (Kell blood group), [Score=83.2, Expect=1e-15]; ENSG00000197993, KEL, Kell metallo-endopeptidase (Kell blood group), [Score=83.2, Expect=1e-15]} {Mouse: ENSMUSG00000029866, Kel, Kell blood group, [Score=91.3, Expect=3e-18]; ENSMUSG00000027820, Mme, membrane metallo endopeptidase, [Score=88.2, Expect=3e-17]} {Dmel: FBgn0031081, Nep3, Neprilysin 3, [Score=96.3, Expect=7e-20]} {Celegans: WBGene00013926, nep-1, Neprilysin-1, [Score=87.0, Expect=3e-17]} {Smed: dd_Smed_v6_8276_0_1, dd_Smed_v6_8276_0_1, [Score=85.1, Expect=1e-16]} {RNA1310_10797} {RNA815_14357}
4. MligTC455_44819 17 0.36 Mlig455_001006

Neo: -

Age: Up-Down-Up

 1.718 - - - - 0.989 0.729 Mlig455_001006 {REF} {Length: 2627} {RNA1310_13211.1} {RNA815_63372}
5. MligTC455_48789 79 1.64 Mlig455_062410

Neo: -

Age: -

 0.971 - - - - - 0.971 Mlig455_062410 {REF} {Length: 257} {NoTransDecoderORF} {RNA1509_43516} {RNA1310_84475} {RNA815_46489}
6. MligTC455_26881 27 0.56 Mlig455_061967

Neo: -

Age: Down-Up-Down

 0.969 - - - - 0.969 - Mlig455_061967 {REF} {Length: 1948} {RNA1509_2150} {RNA1310_11022.1} {RNA815_1043.1}
7. MligTC455_28617 96 2 Mlig455_023492, Mlig455_049195

Neo: -

Age: -

 RPIA 0.963 - - - - 0.963 -

Mlig455_023492 {REF} {Length: 6153} {Celegans: WBGene00021290, clec-122, C-type LECtin, [Score=50.8, Expect=6e-08]} {RNA1509_39265} {RNA1310_73176} {RNA815_35614}

Mlig455_049195 {REF} {Length: 2649} {Pfam: Ribose 5-phosphate isomerase A (phosphoriboisomerase A) [PF06026.16, score=60.7]} {Human: ENSG00000153574, RPIA, ribose 5-phosphate isomerase A, [Score=82.0, Expect=4e-20]} {Mouse: ENSMUSG00000053604, Rpia, ribose 5-phosphate isomerase A, [Score=79.3, Expect=3e-19]} {Dmel: FBgn0050410, Rpi, Ribose-5-phosphate isomerase, [Score=73.6, Expect=1e-17]} {Celegans: WBGene00015101, rpia-1, Probable-ribose 5-phosphate isomerase, [Score=67.0, Expect=3e-15]} {Smed: dd_Smed_v6_12956_0_2, dd_Smed_v6_12956_0_2, [Score=82.8, Expect=2e-21]} {RNA1509_39265} {RNA1310_63659} {RNA815_35614}
8. MligTC455_45715 5 0.1 Mlig455_014512

Neo: -

Age: -

 0.963 - - - - 0.963 - Mlig455_014512 {REF} {Length: 792} {NoTransDecoderORF} {RNA1310_63015.1}
9. MligTC455_10344 73 1.52 Mlig455_059042, Mlig455_070837

Neo: -

Age: logFC(26M/2M)=0.978

 SATL1 0.962 - - - - 0.962 -

Mlig455_059042 {REF} {Length: 1566} {Pfam: Male Flower Specific protein 18 [PF17352.4, score=34.5]; Lamprin [PF06403.13, score=28.7]} {Human: ENSG00000184788, SATL1, spermidine/spermine N1-acetyl transferase like 1, [Score=116, Expect=6e-28]; ENSG00000129646, QRICH2, glutamine rich 2, [Score=112, Expect=3e-26]} {Mouse: ENSMUSG00000070331, Qrich2, glutamine rich 2, [Score=77.8, Expect=6e-15]} {RNA1310_48943} {RNA815_40874}

Mlig455_070837 {REF} {Length: 1824} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_48943} {RNA815_40874}
10. MligTC455_39640 5 0.1 Mlig455_025047

Neo: -

Age: -

 CENPJ 0.962 - - - - 0.962 - Mlig455_025047 {REF} {Length: 3553} {TRANSSPLICED} {Pfam: T-complex protein 10 C-terminus [PF07202.15, score=140.6]} {Human: ENSG00000151849, CENPJ, centromere protein J, [RH, Score=277, Expect=2e-77]} {Mouse: ENSMUSG00000064128, Cenpj, centromere protein J, [RH, Score=213, Expect=3e-56]} {Dmel: FBgn0011020, Sas-4, Spindle assembly abnormal 4, [Score=165, Expect=1e-41]} {Smed: dd_Smed_v6_13670_0_1, dd_Smed_v6_13670_0_1, [RH, Score=186, Expect=4e-48]} {RNA1509_12944, RNA1509_22701} {RNA1310_11119.1, RNA1509_22701} {RNA1509_22701, RNA815_9505}
11. MligTC455_51060 96 2 Mlig455_049902

Neo: -

Age: -

 ZAN 0.962 - - - - 0.962 - Mlig455_049902 {REF} {Length: 3471} {TRANSSPLICED} {Human: ENSG00000146839, ZAN, zonadhesin (gene/pseudogene), [Score=70.5, Expect=2e-11]} {Mouse: ENSMUSG00000052512, Nav2, neuron navigator 2, [Score=56.6, Expect=2e-07]} {RNA1509_16850} {RNA1310_5918.1} {RNA815_14679}
12. MligTC455_30328 71 1.47 Mlig455_029572, Mlig455_029573

Neo: -

Age: -

 TRAF6 0.957 - - - - 0.957 -

Mlig455_029572 {REF} {Length: 1229} {TRANSSPLICED} {Pfam: TRAF-type zinc finger [PF02176.20, score=54.4]; Acetyl-coA carboxylase zinc finger domain [PF17848.3, score=19.6]} {Human: ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=85.9, Expect=2e-18]} {Mouse: ENSMUSG00000021277, Traf3, TNF receptor-associated factor 3, [Score=87.0, Expect=5e-19]} {Smed: dd_Smed_v6_168_0_1, dd_Smed_v6_168_0_1, [Score=77.0, Expect=5e-16]} {RNA1509_36404} {RNA1310_40308} {RNA815_9291}

Mlig455_029573 {REF} {Length: 4182} {Pfam: WD domain, G-beta repeat [PF00400.34, score=24.3]; TRAF-type zinc finger [PF02176.20, score=20.6]} {Human: ENSG00000175104, TRAF6, TNF receptor associated factor 6, [Score=61.2, Expect=3e-09]} {Mouse: ENSMUSG00000026942, Traf2, TNF receptor-associated factor 2, [Score=67.0, Expect=4e-11]} {Smed: dd_Smed_v6_4392_0_1, dd_Smed_v6_4392_0_1, [Score=76.3, Expect=2e-14]} {RNA1509_16871} {RNA1310_29668} {RNA815_24518}
13. MligTC455_14949 191 3.97 Mlig455_018694, Mlig455_018890, Mlig455_064941

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-1.382

 PISD 0.956 - - - - - 0.956

Mlig455_018694 {REF} {Length: 2246} {Pfam: Phosphatidylserine decarboxylase [PF02666.17, score=197.9]} {Human: ENSG00000241878, PISD, phosphatidylserine decarboxylase, [Score=271, Expect=8e-88]} {Mouse: ENSMUSG00000093574, Gm20671, predicted gene 20671, [Score=272, Expect=1e-85]; ENSMUSG00000023452, Pisd, phosphatidylserine decarboxylase, [Score=272, Expect=5e-88]} {Dmel: FBgn0026576, CG5991, [RH, Score=268, Expect=8e-86]} {Celegans: WBGene00015159, psd-1, Phosphatidylserine decarboxylase proenzyme, mitochondrial Phosphatidylserine decarboxylase beta chain Phosphatidylserine decarboxylase alpha chain, [RH, Score=211, Expect=8e-65]} {Smed: dd_Smed_v6_10310_0_1, dd_Smed_v6_10310_0_1, [RH, Score=278, Expect=1e-90]} {RNA1509_32922} {RNA1310_57024} {RNA815_32163.1}

Mlig455_018890 {REF} {Length: 2437} {Pfam: Phosphatidylserine decarboxylase [PF02666.17, score=198.3]} {Human: ENSG00000241878, PISD, phosphatidylserine decarboxylase, [Score=271, Expect=6e-88]} {Mouse: ENSMUSG00000023452, Pisd, phosphatidylserine decarboxylase, [Score=271, Expect=4e-88]; ENSMUSG00000093574, Gm20671, predicted gene 20671, [Score=271, Expect=1e-85]} {Dmel: FBgn0026576, CG5991, [RH, Score=268, Expect=4e-86]} {Celegans: WBGene00015159, psd-1, Phosphatidylserine decarboxylase proenzyme, mitochondrial Phosphatidylserine decarboxylase beta chain Phosphatidylserine decarboxylase alpha chain, [Score=206, Expect=3e-63]} {Smed: dd_Smed_v6_10310_0_1, dd_Smed_v6_10310_0_1, [RH, Score=278, Expect=9e-91]} {RNA1509_32922} {RNA1310_57024, RNA1509_32922} {RNA1509_32922, RNA815_32163.1}

Mlig455_064941 {REF} {Length: 2436} {Pfam: Phosphatidylserine decarboxylase [PF02666.17, score=199.3]} {Human: ENSG00000241878, PISD, phosphatidylserine decarboxylase, [Score=268, Expect=5e-87]} {Mouse: ENSMUSG00000023452, Pisd, phosphatidylserine decarboxylase, [Score=269, Expect=6e-87]; ENSMUSG00000093574, Gm20671, predicted gene 20671, [Score=268, Expect=8e-85]} {Dmel: FBgn0026576, CG5991, [RH, Score=270, Expect=8e-87]} {Celegans: WBGene00015159, psd-1, Phosphatidylserine decarboxylase proenzyme, mitochondrial Phosphatidylserine decarboxylase beta chain Phosphatidylserine decarboxylase alpha chain, [Score=206, Expect=4e-63]} {Smed: dd_Smed_v6_10310_0_1, dd_Smed_v6_10310_0_1, [RH, Score=279, Expect=4e-91]} {RNA1509_32922} {RNA1310_57024} {RNA815_32163.1}
14. MligTC455_28813 218 4.54 Mlig455_019156

Neo: -

Age: logFC(26M/2M)=0.373

 0.952 - - - - 0.952 - Mlig455_019156 {REF} {Length: 2511} {TRANSSPLICED} {RNA1509_7400} {RNA1310_16040.1} {RNA815_8063.1}
15. MligTC455_09289 70 1.45 Mlig455_020488

Neo: -

Age: -

 0.95 - - - - 0.950 - Mlig455_020488 {REF} {Length: 1554}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA