TomoSeq data search

Data search

Results for MligTC455_30788

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_30788

832

17.33

Mlig455_057272

Neo: Int S/G2/M

Age: Down-Up-Down, logFC(26M/2M)=0.411

EIF2S2

Mlig455_057272 {REF} {Length: 2178} {Pfam: Domain found in IF2B/IF5 [PF01873.19, score=133.8]} {Human: ENSG00000125977, EIF2S2, eukaryotic translation initiation factor 2 subunit beta, [RH, Score=251, Expect=1e-82]} {Mouse: ENSMUSG00000074656, Eif2s2, eukaryotic translation initiation factor 2, subunit 2 (beta), [RH, Score=254, Expect=3e-84]} {Dmel: FBgn0004926, eIF2beta, eukaryotic translation initiation factor 2 subunit beta, [RH, Score=240, Expect=4e-79]} {Celegans: WBGene00010560, eif-2beta, Eukaryotic translation initiation factor 2 subunit 2, [RH, Score=216, Expect=1e-70]} {Smed: dd_Smed_v6_3764_0_1, dd_Smed_v6_3764_0_1, [RH, Score=182, Expect=1e-57]} {RNA1509_2020} {RNA1310_27097} {RNA815_5088.1}

Cumulative graph for MligTC455_30788

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.553	4.413	0.59334	1.00000
RegionR2	0.096	4.413	0.81742	1.00000
RegionR3	0.174	4.413	0.61008	1.00000
RegionR4	0.735	4.413	0.07299	0.24917
RegionR5	0.634	4.413	0.03465	0.14357
RegionR6	-0.16	4.413	0.65792	1.00000
RegionR7	-0.533	4.413	0.29888	0.93374
RegionR8	-1.499	4.413	0.03698	0.37709

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	0.425	4.413	0.73735	1.00000
RegenerationR2	0.483	4.413	0.14639	0.57825
RegenerationR3	0.426	4.413	0.25972	0.69397
RegenerationR4	0.609	4.413	0.11681	0.52189
RegenerationR5	0.271	4.413	0.42339	0.81348
RegenerationR6	1.106	4.413	0.00407	0.07638
RegenerationBL	1.55	4.413	0.00123	0.02614
RegenerationTP	1.071	4.413	0.07069	0.42639

Genes with expression patterns similar to MligTC455_30788

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_30788	832	17.33	Mlig455_057272	Neo: Int S/G2/M Age: Down-Up-Down, logFC(26M/2M)=0.411	EIF2S2	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_057272 {REF} {Length: 2178} {Pfam: Domain found in IF2B/IF5 [PF01873.19, score=133.8]} {Human: ENSG00000125977, EIF2S2, eukaryotic translation initiation factor 2 subunit beta, [RH, Score=251, Expect=1e-82]} {Mouse: ENSMUSG00000074656, Eif2s2, eukaryotic translation initiation factor 2, subunit 2 (beta), [RH, Score=254, Expect=3e-84]} {Dmel: FBgn0004926, eIF2beta, eukaryotic translation initiation factor 2 subunit beta, [RH, Score=240, Expect=4e-79]} {Celegans: WBGene00010560, eif-2beta, Eukaryotic translation initiation factor 2 subunit 2, [RH, Score=216, Expect=1e-70]} {Smed: dd_Smed_v6_3764_0_1, dd_Smed_v6_3764_0_1, [RH, Score=182, Expect=1e-57]} {RNA1509_2020} {RNA1310_27097} {RNA815_5088.1}
2.	MligTC455_15938	1689	35.18	Mlig455_018814	Neo: - Age: Down-Up-Up	TRAPPC5	0.96	-	-	-	0.960	-	-	Mlig455_018814 {REF} {Length: 741} {TRANSSPLICED} {Pfam: Transport protein particle (TRAPP) component [PF04051.18, score=102.9]} {Human: ENSG00000181029, TRAPPC5, trafficking protein particle complex 5, [RH, Score=173, Expect=1e-54]} {Mouse: ENSMUSG00000040236, Trappc5, trafficking protein particle complex 5, [RH, Score=173, Expect=7e-55]} {Dmel: FBgn0266723, Trs31, TRAPP subunit 31, [RH, Score=163, Expect=4e-51]} {Smed: dd_Smed_v6_4583_0_1, dd_Smed_v6_4583_0_1, [RH, Score=163, Expect=2e-51]} {RNA1509_14133, RNA1509_27512, RNA1509_33004} {RNA1310_50386, RNA1509_14133, RNA1509_27512, RNA1509_33004} {RNA1509_14133, RNA1509_27512, RNA1509_33004, RNA815_23609}
3.	MligTC455_33918	709	14.78	Mlig455_020264	Neo: - Age: logFC(26M/2M)=0.263		0.959	-	-	0.959	-	-	-	Mlig455_020264 {REF} {Length: 2712} {RNA1509_10971} {RNA1310_14564, RNA1509_10971} {RNA1509_10971, RNA815_20941}
4.	MligTC455_51686	539	11.24	Mlig455_001447	Neo: Int S/G2/M Age: -	USP30	0.954	-	-	0.954	-	-	-	Mlig455_001447 {REF} {Length: 2410} {TRANSSPLICED} {Pfam: Ubiquitin carboxyl-terminal hydrolase [PF00443.31, score=140.0]; Ubiquitin carboxyl-terminal hydrolase [PF13423.8, score=35.6]} {Human: ENSG00000135093, USP30, ubiquitin specific peptidase 30, [RH, Score=105, Expect=6e-24]} {Mouse: ENSMUSG00000029592, Usp30, ubiquitin specific peptidase 30, [RH, Score=105, Expect=6e-24]} {Dmel: FBgn0052479, Usp10, Ubiquitin specific protease 10, [Score=89.4, Expect=1e-18]} {Celegans: WBGene00022052, Y67D2.2, Ubiquitin carboxyl-terminal hydrolase, [RH, Score=77.8, Expect=3e-15]} {Smed: dd_Smed_v6_9523_0_1, dd_Smed_v6_9523_0_1, [RH, Score=78.6, Expect=7e-16]} {RNA1509_18664, RNA1509_20794} {RNA1310_18122, RNA1509_18664, RNA1509_20794} {RNA1509_18664, RNA1509_20794, RNA815_10320}
5.	MligTC455_23622	626	13.03	Mlig455_069362	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.469 Region-enriched R4: 1.674/0.00636	RPS6KB1	0.951	-	-	0.951	-	-	-	Mlig455_069362 {REF} {Length: 5681} {Pfam: Protein kinase domain [PF00069.27, score=223.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=116.0]; Protein kinase C terminal domain [PF00433.26, score=40.0]; Kinase-like [PF14531.8, score=20.6]; Fungal protein kinase [PF17667.3, score=19.6]; ABC1 atypical kinase-like domain [PF03109.18, score=18.3]} {Human: ENSG00000108443, RPS6KB1, ribosomal protein S6 kinase B1, [RH, Score=474, Expect=2e-164]; ENSG00000175634, RPS6KB2, ribosomal protein S6 kinase B2, [RH, Score=471, Expect=1e-162]} {Mouse: ENSMUSG00000020516, Rps6kb1, ribosomal protein S6 kinase, polypeptide 1, [RH, Score=474, Expect=2e-163]; ENSMUSG00000097721, Rps6kb2, ribosomal protein S6 kinase, polypeptide 2, [RH, Score=461, Expect=5e-159]; ENSMUSG00000024830, Rps6kb2, ribosomal protein S6 kinase, polypeptide 2, [RH, Score=461, Expect=5e-159]} {Dmel: FBgn0283472, S6k, Ribosomal protein S6 kinase, [RH, Score=454, Expect=6e-156]} {Celegans: WBGene00012929, rsks-1, Ribosomal protein S6 kinase beta, [Score=446, Expect=3e-152]} {Smed: dd_Smed_v6_11674_0_1, dd_Smed_v6_11674_0_1, [RH, Score=424, Expect=5e-144]} {RNA1509_13825} {RNA1310_8029, RNA1509_13825} {RNA1509_13825, RNA815_1183}

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