TomoSeq data search

Data search

Results for MligTC455_30827

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_30827	909	18.94	Mlig455_053494, Mlig455_053499	Neo: - Age: Down-Up-Down	RAB8A	Mlig455_053494 {REF} {Length: 2941} {Pfam: Ras family [PF00071.24, score=213.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.9]; ADP-ribosylation factor family [PF00025.23, score=60.2]; Gtr1/RagA G protein conserved region [PF04670.14, score=28.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.4]; Signal recognition particle receptor beta subunit [PF09439.12, score=22.8]; 50S ribosome-binding GTPase [PF01926.25, score=19.2]} {Human: ENSG00000167461, RAB8A, RAB8A, member RAS oncogene family, [RH, Score=303, Expect=2e-105]; ENSG00000166128, RAB8B, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=5e-104]} {Mouse: ENSMUSG00000003037, Rab8a, RAB8A, member RAS oncogene family, [RH, Score=302, Expect=2e-105]; ENSMUSG00000036943, Rab8b, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=2e-104]} {Dmel: FBgn0262518, Rab8, [RH, Score=281, Expect=5e-97]} {Celegans: WBGene00004272, rab-8, RAB family; Rab8, [RH, Score=271, Expect=2e-93]} {Smed: dd_Smed_v6_3485_0_1, dd_Smed_v6_3485_0_1, [RH, Score=281, Expect=4e-97]} {RNA1509_3060} {RNA1310_14174} {RNA815_3345.1} Mlig455_053499 {REF} {Length: 2980} {Pfam: Ras family [PF00071.24, score=213.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.9]; ADP-ribosylation factor family [PF00025.23, score=60.2]; Gtr1/RagA G protein conserved region [PF04670.14, score=28.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.4]; Signal recognition particle receptor beta subunit [PF09439.12, score=22.8]; 50S ribosome-binding GTPase [PF01926.25, score=19.2]} {Human: ENSG00000167461, RAB8A, RAB8A, member RAS oncogene family, [RH, Score=303, Expect=2e-105]; ENSG00000166128, RAB8B, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=5e-104]} {Mouse: ENSMUSG00000003037, Rab8a, RAB8A, member RAS oncogene family, [RH, Score=302, Expect=2e-105]; ENSMUSG00000036943, Rab8b, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=2e-104]} {Dmel: FBgn0262518, Rab8, [RH, Score=281, Expect=5e-97]} {Celegans: WBGene00004272, rab-8, RAB family; Rab8, [RH, Score=271, Expect=2e-93]} {Smed: dd_Smed_v6_3485_0_1, dd_Smed_v6_3485_0_1, [RH, Score=281, Expect=4e-97]} {RNA1509_3060} {RNA1310_14174} {RNA815_3345.1}

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_30827

909

18.94

Mlig455_053494, Mlig455_053499

Neo: -

Age: Down-Up-Down

RAB8A

Mlig455_053494 {REF} {Length: 2941} {Pfam: Ras family [PF00071.24, score=213.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.9]; ADP-ribosylation factor family [PF00025.23, score=60.2]; Gtr1/RagA G protein conserved region [PF04670.14, score=28.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.4]; Signal recognition particle receptor beta subunit [PF09439.12, score=22.8]; 50S ribosome-binding GTPase [PF01926.25, score=19.2]} {Human: ENSG00000167461, RAB8A, RAB8A, member RAS oncogene family, [RH, Score=303, Expect=2e-105]; ENSG00000166128, RAB8B, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=5e-104]} {Mouse: ENSMUSG00000003037, Rab8a, RAB8A, member RAS oncogene family, [RH, Score=302, Expect=2e-105]; ENSMUSG00000036943, Rab8b, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=2e-104]} {Dmel: FBgn0262518, Rab8, [RH, Score=281, Expect=5e-97]} {Celegans: WBGene00004272, rab-8, RAB family; Rab8, [RH, Score=271, Expect=2e-93]} {Smed: dd_Smed_v6_3485_0_1, dd_Smed_v6_3485_0_1, [RH, Score=281, Expect=4e-97]} {RNA1509_3060} {RNA1310_14174} {RNA815_3345.1}

Mlig455_053499 {REF} {Length: 2980} {Pfam: Ras family [PF00071.24, score=213.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.9]; ADP-ribosylation factor family [PF00025.23, score=60.2]; Gtr1/RagA G protein conserved region [PF04670.14, score=28.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.4]; Signal recognition particle receptor beta subunit [PF09439.12, score=22.8]; 50S ribosome-binding GTPase [PF01926.25, score=19.2]} {Human: ENSG00000167461, RAB8A, RAB8A, member RAS oncogene family, [RH, Score=303, Expect=2e-105]; ENSG00000166128, RAB8B, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=5e-104]} {Mouse: ENSMUSG00000003037, Rab8a, RAB8A, member RAS oncogene family, [RH, Score=302, Expect=2e-105]; ENSMUSG00000036943, Rab8b, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=2e-104]} {Dmel: FBgn0262518, Rab8, [RH, Score=281, Expect=5e-97]} {Celegans: WBGene00004272, rab-8, RAB family; Rab8, [RH, Score=271, Expect=2e-93]} {Smed: dd_Smed_v6_3485_0_1, dd_Smed_v6_3485_0_1, [RH, Score=281, Expect=4e-97]} {RNA1509_3060} {RNA1310_14174} {RNA815_3345.1}

Cumulative graph for MligTC455_30827

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-0.317	4.463	0.76611	1.00000
RegionR2	-0.515	4.463	0.27298	0.65763
RegionR3	0.241	4.463	0.51367	1.00000
RegionR4	0.154	4.463	0.73257	1.00000
RegionR5	0.397	4.463	0.25232	0.56938
RegionR6	0.179	4.463	0.63606	1.00000
RegionR7	0.073	4.463	0.87574	1.00000
RegionR8	-0.212	4.463	0.72604	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.411	4.463	0.76669	1.00000
RegenerationR2	0.464	4.463	0.25152	0.69780
RegenerationR3	0.266	4.463	0.53975	0.87750
RegenerationR4	0.793	4.463	0.07337	0.43036
RegenerationR5	0.34	4.463	0.40180	0.80037
RegenerationR6	-0.267	4.463	0.54916	0.83854
RegenerationBL	-0.324	4.463	0.53433	0.89375
RegenerationTP	0.685	4.463	0.18364	0.62032

Genes with expression patterns similar to MligTC455_30827

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_30827	909	18.94	Mlig455_053494, Mlig455_053499	Neo: - Age: Down-Up-Down	RAB8A	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_053494 {REF} {Length: 2941} {Pfam: Ras family [PF00071.24, score=213.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.9]; ADP-ribosylation factor family [PF00025.23, score=60.2]; Gtr1/RagA G protein conserved region [PF04670.14, score=28.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.4]; Signal recognition particle receptor beta subunit [PF09439.12, score=22.8]; 50S ribosome-binding GTPase [PF01926.25, score=19.2]} {Human: ENSG00000167461, RAB8A, RAB8A, member RAS oncogene family, [RH, Score=303, Expect=2e-105]; ENSG00000166128, RAB8B, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=5e-104]} {Mouse: ENSMUSG00000003037, Rab8a, RAB8A, member RAS oncogene family, [RH, Score=302, Expect=2e-105]; ENSMUSG00000036943, Rab8b, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=2e-104]} {Dmel: FBgn0262518, Rab8, [RH, Score=281, Expect=5e-97]} {Celegans: WBGene00004272, rab-8, RAB family; Rab8, [RH, Score=271, Expect=2e-93]} {Smed: dd_Smed_v6_3485_0_1, dd_Smed_v6_3485_0_1, [RH, Score=281, Expect=4e-97]} {RNA1509_3060} {RNA1310_14174} {RNA815_3345.1} Mlig455_053499 {REF} {Length: 2980} {Pfam: Ras family [PF00071.24, score=213.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=114.9]; ADP-ribosylation factor family [PF00025.23, score=60.2]; Gtr1/RagA G protein conserved region [PF04670.14, score=28.0]; Elongation factor Tu GTP binding domain [PF00009.29, score=25.4]; Signal recognition particle receptor beta subunit [PF09439.12, score=22.8]; 50S ribosome-binding GTPase [PF01926.25, score=19.2]} {Human: ENSG00000167461, RAB8A, RAB8A, member RAS oncogene family, [RH, Score=303, Expect=2e-105]; ENSG00000166128, RAB8B, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=5e-104]} {Mouse: ENSMUSG00000003037, Rab8a, RAB8A, member RAS oncogene family, [RH, Score=302, Expect=2e-105]; ENSMUSG00000036943, Rab8b, RAB8B, member RAS oncogene family, [RH, Score=300, Expect=2e-104]} {Dmel: FBgn0262518, Rab8, [RH, Score=281, Expect=5e-97]} {Celegans: WBGene00004272, rab-8, RAB family; Rab8, [RH, Score=271, Expect=2e-93]} {Smed: dd_Smed_v6_3485_0_1, dd_Smed_v6_3485_0_1, [RH, Score=281, Expect=4e-97]} {RNA1509_3060} {RNA1310_14174} {RNA815_3345.1}
2.	MligTC455_40474	603	12.56	Mlig455_002962	Neo: - Age: -	MITF	0.962	-	-	-	0.962	-	-	Mlig455_002962 {REF} {Length: 3275} {TRANSSPLICED} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=51.2]; MITF/TFEB/TFEC/TFE3 N-terminus [PF15951.7, score=21.1]} {Human: ENSG00000187098, MITF, melanogenesis associated transcription factor, [RH, Score=102, Expect=8e-23]; ENSG00000068323, TFE3, transcription factor binding to IGHM enhancer 3, [RH, Score=97.8, Expect=4e-21]} {Mouse: ENSMUSG00000035158, Mitf, melanogenesis associated transcription factor, [RH, Score=102, Expect=9e-23]; ENSMUSG00000000134, Tfe3, transcription factor E3, [RH, Score=97.8, Expect=3e-21]} {Dmel: FBgn0263112, Mitf, [RH, Score=87.0, Expect=8e-18]} {Celegans: WBGene00020930, hlh-30, Helix Loop Helix, [Score=77.4, Expect=4e-15]} {Smed: dd_Smed_v6_7316_0_1, dd_Smed_v6_7316_0_1, [Score=87.4, Expect=3e-18]} {RNA1509_15752, RNA1509_39954} {RNA1310_5993.2, RNA1509_15752, RNA1509_39954} {RNA1509_15752, RNA1509_39954, RNA815_13345}
3.	MligTC455_25248	1332	27.75	Mlig455_008436	Neo: - Age: logFC(26M/2M)=-0.215		0.96	-	-	-	0.960	-	-	Mlig455_008436 {REF} {Length: 6765} {Pfam: LicD family [PF04991.15, score=61.5]} {Mouse: ENSMUSG00000048920, Fkrp, fukutin related protein, [Score=47.8, Expect=1e-05]} {Smed: dd_Smed_v6_9951_0_1, dd_Smed_v6_9951_0_1, [Score=177, Expect=1e-53]} {RNA1509_13435, RNA1509_24800, RNA1509_27773, RNA1509_36968, RNA1509_39946} {RNA1310_20564.1, RNA1509_13435, RNA1509_24800, RNA1509_27773, RNA1509_36968, RNA1509_39946} {RNA1509_13435, RNA1509_24800, RNA1509_27773, RNA1509_36968, RNA1509_39946, RNA815_8075}

Nr.

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Σ Spearman correlations

Int1

Int2

Int3

Reg1

Reg2

Reg3

Annotation

MligTC455_30827

909

18.94

Mlig455_053494, Mlig455_053499

Neo: -

Age: Down-Up-Down

RAB8A

1.000

MligTC455_40474

603

12.56

Mlig455_002962

Neo: -

Age: -

MITF

0.962

Mlig455_002962 {REF} {Length: 3275} {TRANSSPLICED} {Pfam: Helix-loop-helix DNA-binding domain [PF00010.28, score=51.2]; MITF/TFEB/TFEC/TFE3 N-terminus [PF15951.7, score=21.1]} {Human: ENSG00000187098, MITF, melanogenesis associated transcription factor, [RH, Score=102, Expect=8e-23]; ENSG00000068323, TFE3, transcription factor binding to IGHM enhancer 3, [RH, Score=97.8, Expect=4e-21]} {Mouse: ENSMUSG00000035158, Mitf, melanogenesis associated transcription factor, [RH, Score=102, Expect=9e-23]; ENSMUSG00000000134, Tfe3, transcription factor E3, [RH, Score=97.8, Expect=3e-21]} {Dmel: FBgn0263112, Mitf, [RH, Score=87.0, Expect=8e-18]} {Celegans: WBGene00020930, hlh-30, Helix Loop Helix, [Score=77.4, Expect=4e-15]} {Smed: dd_Smed_v6_7316_0_1, dd_Smed_v6_7316_0_1, [Score=87.4, Expect=3e-18]} {RNA1509_15752, RNA1509_39954} {RNA1310_5993.2, RNA1509_15752, RNA1509_39954} {RNA1509_15752, RNA1509_39954, RNA815_13345}

MligTC455_25248

1332

27.75

Mlig455_008436

Neo: -

Age: logFC(26M/2M)=-0.215

0.96

0.960

Mlig455_008436 {REF} {Length: 6765} {Pfam: LicD family [PF04991.15, score=61.5]} {Mouse: ENSMUSG00000048920, Fkrp, fukutin related protein, [Score=47.8, Expect=1e-05]} {Smed: dd_Smed_v6_9951_0_1, dd_Smed_v6_9951_0_1, [Score=177, Expect=1e-53]} {RNA1509_13435, RNA1509_24800, RNA1509_27773, RNA1509_36968, RNA1509_39946} {RNA1310_20564.1, RNA1509_13435, RNA1509_24800, RNA1509_27773, RNA1509_36968, RNA1509_39946} {RNA1509_13435, RNA1509_24800, RNA1509_27773, RNA1509_36968, RNA1509_39946, RNA815_8075}