M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_31154

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_31154 40 0.84 Mlig455_036484

Neo: -

Age: Up-Down-Up

 UBE3B Mlig455_036484 {REF} {Length: 5654} {TRANSSPLICED} {Pfam: HECT-domain (ubiquitin-transferase) [PF00632.27, score=300.0]} {Human: ENSG00000151148, UBE3B, ubiquitin protein ligase E3B, [RH, Score=817, Expect=0.0]} {Mouse: ENSMUSG00000029577, Ube3b, ubiquitin protein ligase E3B, [RH, Score=814, Expect=0.0]} {Dmel: FBgn0035953, CG5087, [RH, Score=745, Expect=0.0]} {Celegans: WBGene00003898, oxi-1, OXidative stress Induced, [RH, Score=583, Expect=0.0]} {Smed: dd_Smed_v6_9399_0_1, dd_Smed_v6_9399_0_1, [RH, Score=766, Expect=0.0]} {RNA1509_7837} {RNA1310_873} {RNA815_4849.1}

Cumulative graph for MligTC455_31154

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 3.49 1.315 0.99983 1.00000
RegionR2 -1.171 1.315 0.99747 1.00000
RegionR3 -0.852 1.315 0.97904 1.00000
RegionR4 4.107 1.315 0.04957 0.19146
RegionR5 -0.85 1.315 0.95660 1.00000
RegionR6 -0.81 1.315 0.97535 1.00000
RegionR7 -4.535 1.315 0.99985 1.00000
RegionR8 0.621 1.315 0.94032 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.414 1.315 0.99993 1.00000
RegenerationR2 -0.397 1.315 0.88572 1.00000
RegenerationR3 -2.176 1.315 0.18995 0.62529
RegenerationR4 -2.557 1.315 0.10274 0.49559
RegenerationR5 0.254 1.315 0.73789 0.96758
RegenerationR6 -1.869 1.315 0.19380 0.53294
RegenerationBL -3.099 1.315 1.00000 1.00000
RegenerationTP 1.042 1.315 0.83208 1.00000


Genes with expression patterns similar to MligTC455_31154

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_31154 40 0.84 Mlig455_036484

Neo: -

Age: Up-Down-Up

 UBE3B 4 1.000 - 1.000 - 1.000 1.000 Mlig455_036484 {REF} {Length: 5654} {TRANSSPLICED} {Pfam: HECT-domain (ubiquitin-transferase) [PF00632.27, score=300.0]} {Human: ENSG00000151148, UBE3B, ubiquitin protein ligase E3B, [RH, Score=817, Expect=0.0]} {Mouse: ENSMUSG00000029577, Ube3b, ubiquitin protein ligase E3B, [RH, Score=814, Expect=0.0]} {Dmel: FBgn0035953, CG5087, [RH, Score=745, Expect=0.0]} {Celegans: WBGene00003898, oxi-1, OXidative stress Induced, [RH, Score=583, Expect=0.0]} {Smed: dd_Smed_v6_9399_0_1, dd_Smed_v6_9399_0_1, [RH, Score=766, Expect=0.0]} {RNA1509_7837} {RNA1310_873} {RNA815_4849.1}
2. MligTC455_45451 172 3.59 Mlig455_053394

Neo: Int S/G2/M

Age: -

 1.705 0.740 - - - 0.965 - Mlig455_053394 {REF} {Length: 5274} {TRANSSPLICED} {RNA1509_37721, RNA1509_38123, RNA1509_58240} {RNA1310_18023, RNA1509_37721, RNA1509_38123, RNA1509_58240} {RNA1509_37721, RNA1509_38123, RNA1509_58240, RNA815_8000}
3. MligTC455_47279 470 9.79 Mlig455_026752, Mlig455_051742, Mlig455_051771

Neo: Int S/G2/M

Age: -

 PUS1 0.984 - - - - 0.984 -

Mlig455_026752 {REF} {Length: 2564} {TRANSSPLICED} {Pfam: tRNA pseudouridine synthase [PF01416.22, score=44.5]} {Human: ENSG00000177192, PUS1, pseudouridylate synthase 1, [RH, Score=283, Expect=2e-91]} {Mouse: ENSMUSG00000029507, Pus1, pseudouridine synthase 1, [RH, Score=277, Expect=2e-89]} {Dmel: FBgn0038811, PUS1, pseudouridylate synthase 1, [RH, Score=283, Expect=1e-91]} {Celegans: WBGene00004248, pus-1, tRNA pseudouridine synthase, [RH, Score=220, Expect=2e-67]} {Smed: dd_Smed_v6_7557_0_1, dd_Smed_v6_7557_0_1, [RH, Score=318, Expect=1e-106]} {RNA1509_10920} {RNA1310_16930, RNA1509_10920} {RNA1509_10920, RNA815_10919.1}

Mlig455_051742 {REF} {Length: 2515} {TRANSSPLICED} {Pfam: tRNA pseudouridine synthase [PF01416.22, score=33.3]} {Human: ENSG00000177192, PUS1, pseudouridylate synthase 1, [Score=252, Expect=9e-80]} {Mouse: ENSMUSG00000029507, Pus1, pseudouridine synthase 1, [Score=246, Expect=7e-78]} {Dmel: FBgn0038811, PUS1, pseudouridylate synthase 1, [Score=251, Expect=9e-80]} {Celegans: WBGene00004248, pus-1, tRNA pseudouridine synthase, [Score=191, Expect=1e-56]} {Smed: dd_Smed_v6_7557_0_1, dd_Smed_v6_7557_0_1, [Score=286, Expect=4e-94]} {RNA1509_10920} {RNA1310_16930} {RNA815_10919.1}

Mlig455_051771 {REF} {Length: 2418} {TRANSSPLICED} {Pfam: tRNA pseudouridine synthase [PF01416.22, score=45.0]} {Human: ENSG00000177192, PUS1, pseudouridylate synthase 1, [RH, Score=287, Expect=3e-93]} {Mouse: ENSMUSG00000029507, Pus1, pseudouridine synthase 1, [RH, Score=280, Expect=1e-90]} {Dmel: FBgn0038811, PUS1, pseudouridylate synthase 1, [RH, Score=287, Expect=2e-93]} {Celegans: WBGene00004248, pus-1, tRNA pseudouridine synthase, [RH, Score=225, Expect=2e-69]} {Smed: dd_Smed_v6_7557_0_1, dd_Smed_v6_7557_0_1, [RH, Score=315, Expect=3e-105]} {RNA1509_10920, RNA1509_50713} {RNA1310_16930, RNA1509_50713} {RNA1509_50713, RNA815_10919.1}
4. MligTC455_49211 30 0.63 Mlig455_044533

Neo: -

Age: -

 0.977 - - 0.977 - - - Mlig455_044533 {REF} {Length: 2489} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=139.7]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=62.0, Expect=5e-10]} {Smed: dd_Smed_v6_26469_0_1, dd_Smed_v6_26469_0_1, [Score=51.6, Expect=1e-07]} {RNA1509_50956} {RNA1310_27155} {RNA815_39321}
5. MligTC455_51222 48 1.01 Mlig455_012238

Neo: -

Age: -

 0.968 - - 0.968 - - - Mlig455_012238 {REF} {Length: 3328} {NoTransDecoderORF} {RNA1509_38168} {RNA1310_732.1} {RNA815_27031}
6. MligTC455_16243 108 2.26 Mlig455_063048

Neo: -

Age: -

 0.964 - - - - 0.964 - Mlig455_063048 {REF} {Length: 2934} {TRANSSPLICED} {RNA1509_56072} {RNA1310_35648.1, RNA1509_56072} {RNA1509_56072, RNA815_22277}
7. MligTC455_24475 10 0.2 Mlig455_022806

Neo: -

Age: -

 DHFR 0.963 - - - - 0.963 - Mlig455_022806 {REF} {Length: 1454} {TRANSSPLICED} {Pfam: Dihydrofolate reductase [PF00186.21, score=48.5]} {Human: ENSG00000228716, DHFR, dihydrofolate reductase, [RH, Score=67.8, Expect=1e-12]} {Mouse: ENSMUSG00000021707, Dhfr, dihydrofolate reductase, [RH, Score=71.2, Expect=5e-14]} {Celegans: WBGene00007974, dhfr-1, Putative dihydrofolate reductase, [RH, Score=59.3, Expect=4e-10]} {RNA1509_20595} {RNA1310_24596.1} {RNA815_40411}
8. MligTC455_52804 6 0.13 Mlig455_054307

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_054307 {REF} {Length: 527} {NoTransDecoderORF} {RNA1509_33264} {RNA1310_126161}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA