TomoSeq data search

Data search

Results for MligTC455_31245

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_31245

49

1.02

Mlig455_022851

Neo: Irradiation

Age: -

GABBR2

Mlig455_022851 {REF} {Length: 2914} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=162.3]; Receptor family ligand binding region [PF01094.30, score=112.4]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=295, Expect=5e-87]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=294, Expect=8e-87]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=258, Expect=4e-73]} {Celegans: WBGene00021528, gbb-1, GABA B receptor subunit; GABAB1 receptor subunit, [Score=237, Expect=7e-67]} {Smed: dd_Smed_v6_51663_0_1, dd_Smed_v6_51663_0_1, [Score=130, Expect=6e-34]} {RNA1509_26993} {RNA1310_7927.1} {RNA815_4866.1}

Cumulative graph for MligTC455_31245

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.089	1.015	0.93678	1.00000
RegionR2	1.524	1.015	0.50708	0.88561
RegionR3	-2.111	1.015	0.99992	1.00000
RegionR4	0.266	1.015	0.58628	0.90178
RegionR5	4.204	1.015	0.10982	0.32525
RegionR6	2.2	1.015	0.30253	0.89359
RegionR7	-2.677	1.015	0.99996	1.00000
RegionR8	-3.317	1.015	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-3.852	1.015	0.64884	1.00000
RegenerationR2	-2.433	1.015	0.31766	0.75629
RegenerationR3	1.719	1.015	0.47474	0.84687
RegenerationR4	-2.466	1.015	0.25703	0.70489
RegenerationR5	-2.667	1.015	0.49294	0.85467
RegenerationR6	-3.336	1.015	0.31425	0.66176
RegenerationBL	-0.798	1.015	0.99984	1.00000
RegenerationTP	0.814	1.015	0.99986	1.00000

Genes with expression patterns similar to MligTC455_31245

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_31245	49	1.02	Mlig455_022851	Neo: Irradiation Age: -	GABBR2	4	1.000	1.000	1.000	-	-	1.000	Mlig455_022851 {REF} {Length: 2914} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=162.3]; Receptor family ligand binding region [PF01094.30, score=112.4]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=295, Expect=5e-87]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=294, Expect=8e-87]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=258, Expect=4e-73]} {Celegans: WBGene00021528, gbb-1, GABA B receptor subunit; GABAB1 receptor subunit, [Score=237, Expect=7e-67]} {Smed: dd_Smed_v6_51663_0_1, dd_Smed_v6_51663_0_1, [Score=130, Expect=6e-34]} {RNA1509_26993} {RNA1310_7927.1} {RNA815_4866.1}
2.	MligTC455_01843	28	0.58	Mlig455_035163	Neo: Int S/G2/M Age: - Region-enriched R5: 5.537/0.00499		2.635	0.968	-	0.909	-	-	0.758	Mlig455_035163 {REF} {Length: 511} {NoTransDecoderORF} {RNA1310_72948.2} {RNA815_44699}
3.	MligTC455_27031	33	0.69	Mlig455_055855	Neo: - Age: -	MTMR14	2.628	0.749	-	0.894	-	-	0.985	Mlig455_055855 {REF} {Length: 2462} {TRANSSPLICED} {Pfam: Myotubularin-like phosphatase domain [PF06602.16, score=24.0]} {Human: ENSG00000163719, MTMR14, myotubularin related protein 14, [RH, Score=254, Expect=9e-78]} {Mouse: ENSMUSG00000030269, Mtmr14, myotubularin related protein 14, [RH, Score=251, Expect=6e-76]} {Dmel: FBgn0027506, EDTP, Egg-derived tyrosine phosphatase, [RH, Score=250, Expect=7e-75]} {Smed: dd_Smed_v6_6564_0_4, dd_Smed_v6_6564_0_4, [RH, Score=278, Expect=4e-88]} {RNA1509_26288, RNA1509_55802} {RNA1310_17788, RNA1509_26288, RNA1509_55802} {RNA1509_26288, RNA1509_55802, RNA815_7483.1}
4.	MligTC455_20228	160	3.33	Mlig455_025853, Mlig455_025915	Neo: Irradiation Age: - Region-enriched R5: 2.361/0.00341	BLM	2.62	-	0.950	0.819	-	-	0.851	Mlig455_025853 {REF} {Length: 4872} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=68.7]; Helicase conserved C-terminal domain [PF00271.33, score=64.4]; RecQ zinc-binding [PF16124.7, score=57.3]; HRDC domain [PF00570.25, score=42.5]; RQC domain [PF09382.12, score=39.4]; Type III restriction enzyme, res subunit [PF04851.17, score=26.0]} {Human: ENSG00000197299, BLM, Bloom syndrome RecQ like helicase, [RH, Score=560, Expect=6e-176]} {Mouse: ENSMUSG00000030528, Blm, Bloom syndrome, RecQ like helicase, [RH, Score=555, Expect=5e-174]} {Dmel: FBgn0002906, Blm, Bloom syndrome helicase, [RH, Score=568, Expect=1e-178]} {Celegans: WBGene00001865, him-6, Bloom syndrome protein homolog, [RH, Score=484, Expect=5e-152]} {Smed: dd_Smed_v6_10119_0_1, dd_Smed_v6_10119_0_1, [RH, Score=662, Expect=0.0]} {RNA1509_10459} {RNA1310_1433} {RNA815_5612} Mlig455_025915 {REF} {Length: 4878} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.31, score=68.6]; Helicase conserved C-terminal domain [PF00271.33, score=64.2]; RecQ zinc-binding [PF16124.7, score=57.2]; HRDC domain [PF00570.25, score=42.4]; RQC domain [PF09382.12, score=39.3]; Type III restriction enzyme, res subunit [PF04851.17, score=25.9]} {Human: ENSG00000197299, BLM, Bloom syndrome RecQ like helicase, [RH, Score=558, Expect=1e-174]} {Mouse: ENSMUSG00000030528, Blm, Bloom syndrome, RecQ like helicase, [RH, Score=553, Expect=2e-172]} {Dmel: FBgn0002906, Blm, Bloom syndrome helicase, [RH, Score=567, Expect=2e-177]} {Celegans: WBGene00001865, him-6, Bloom syndrome protein homolog, [RH, Score=483, Expect=3e-151]} {Smed: dd_Smed_v6_10119_0_1, dd_Smed_v6_10119_0_1, [RH, Score=661, Expect=0.0]} {RNA1509_10459} {RNA1310_1433} {RNA815_5612}
5.	MligTC455_43911	168	3.5	Mlig455_034576	Neo: - Age: -	PRPS1	2.584	-	0.952	0.813	-	-	0.819	Mlig455_034576 {REF} {Length: 2812} {Pfam: N-terminal domain of ribose phosphate pyrophosphokinase [PF13793.8, score=161.2]; Phosphoribosyl synthetase-associated domain [PF14572.8, score=147.0]; Phosphoribosyl transferase domain [PF00156.29, score=55.6]; Uracil phosphoribosyltransferase [PF14681.8, score=25.7]} {Human: ENSG00000147224, PRPS1, phosphoribosyl pyrophosphate synthetase 1, [RH, Score=552, Expect=0.0]; ENSG00000101911, PRPS2, phosphoribosyl pyrophosphate synthetase 2, [RH, Score=545, Expect=0.0]; ENSG00000229937, PRPS1L1, phosphoribosyl pyrophosphate synthetase 1-like 1, [RH, Score=526, Expect=0.0]} {Mouse: ENSMUSG00000031432, Prps1, phosphoribosyl pyrophosphate synthetase 1, [RH, Score=552, Expect=0.0]; ENSMUSG00000079104, Prps1l3, phosphoribosyl pyrophosphate synthetase 1-like 3, [RH, Score=550, Expect=0.0]; ENSMUSG00000025742, Prps2, phosphoribosyl pyrophosphate synthetase 2, [RH, Score=544, Expect=0.0]; ENSMUSG00000092305, Prps1l1, phosphoribosyl pyrophosphate synthetase 1-like 1, [RH, Score=542, Expect=0.0]} {Dmel: FBgn0036030, CG6767, [RH, Score=543, Expect=0.0]} {Celegans: WBGene00020107, R151.2, [RH, Score=521, Expect=0.0]} {Smed: dd_Smed_v6_2327_0_1, dd_Smed_v6_2327_0_1, [RH, Score=518, Expect=0.0]} {RNA1509_21689, RNA1509_3684} {RNA1310_1271.2, RNA1509_21689} {RNA1509_21689, RNA815_5074.1}
6.	MligTC455_09922	12	0.25	Mlig455_033165	Neo: - Age: -		1.886	0.910	-	-	-	-	0.976	Mlig455_033165 {REF} {Length: 616} {NoTransDecoderORF} {RNA1310_72784} {RNA815_39906}
7.	MligTC455_31246	15	0.31	Mlig455_022850	Neo: Irradiation Age: Up-Down-Down Region-enriched R5: 5.310/0.01427	GABBR2	1.885	0.963	-	0.922	-	-	-	Mlig455_022850 {REF} {Length: 2583} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=77.0]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=111, Expect=1e-28]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=113, Expect=3e-29]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=107, Expect=2e-27]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=103, Expect=2e-26]} {Smed: dd_Smed_v6_59890_0_1, dd_Smed_v6_59890_0_1, [Score=89.7, Expect=4e-23]} {RNA1509_26993} {RNA1310_47864} {RNA815_39261}
8.	MligTC455_31247	14	0.29	Mlig455_044310	Neo: - Age: - Region-enriched R5: 5.400/0.00611	GABBR2	1.885	0.963	-	0.922	-	-	-	Mlig455_044310 {REF} {Length: 2678} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=164.0]; Receptor family ligand binding region [PF01094.30, score=83.4]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=258, Expect=6e-75]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=259, Expect=2e-75]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=248, Expect=1e-70]} {Celegans: WBGene00022675, gbb-2, GABA B receptor subunit; GABAB2 receptor subunit, [Score=202, Expect=1e-55]} {Smed: dd_Smed_v6_51663_0_1, dd_Smed_v6_51663_0_1, [Score=129, Expect=8e-34]} {RNA1509_26993} {RNA1310_7927.1} {RNA815_4866.1}
9.	MligTC455_14133	34	0.7	Mlig455_049257	Neo: Irradiation Age: - Region-enriched R6: 7.088/0.00083 Region-enriched R5: 6.140/0.00035	GLS	1.846	0.887	-	-	-	-	0.959	Mlig455_049257 {REF} {Length: 2534} {Pfam: Glutaminase [PF04960.17, score=249.2]; Ankyrin repeats (3 copies) [PF12796.9, score=32.6]; Ankyrin repeats (many copies) [PF13637.8, score=31.0]; Ankyrin repeats (many copies) [PF13857.8, score=28.8]; EF-hand domain [PF17959.3, score=22.7]} {Human: ENSG00000115419, GLS, glutaminase, [Score=374, Expect=2e-120]; ENSG00000135423, GLS2, glutaminase 2, [Score=360, Expect=5e-116]} {Mouse: ENSMUSG00000026103, Gls, glutaminase, [Score=372, Expect=7e-120]; ENSMUSG00000044005, Gls2, glutaminase 2 (liver, mitochondrial), [Score=368, Expect=4e-119]} {Dmel: FBgn0261625, GLS, Glutaminase, [Score=379, Expect=8e-123]} {Celegans: WBGene00007480, glna-1, GLutamiNAse, [Score=383, Expect=6e-123]} {Smed: dd_Smed_v6_15097_0_1, dd_Smed_v6_15097_0_1, [Score=298, Expect=1e-94]} {RNA1509_45807} {RNA1310_38679, RNA1509_45807}
10.	MligTC455_26712	375	7.82	Mlig455_031611	Neo: Int S/G2/M Age: -	PNLDC1	1.733	0.780	0.953	-	-	-	-	Mlig455_031611 {REF} {Length: 3355} {TRANSSPLICED} {Pfam: CAF1 family ribonuclease [PF04857.22, score=211.9]} {Human: ENSG00000146453, PNLDC1, PARN like, ribonuclease domain containing 1, [RH, Score=184, Expect=1e-50]} {Mouse: ENSMUSG00000073460, Pnldc1, poly(A)-specific ribonuclease (PARN)-like domain containing 1, [RH, Score=188, Expect=4e-52]} {Celegans: WBGene00010734, parn-1, 3'-5' exoribonuclease parn-1, [RH, Score=86.7, Expect=1e-17]} {Smed: dd_Smed_v6_7361_0_1, dd_Smed_v6_7361_0_1, [RH, Score=174, Expect=7e-47]} {RNA1509_21738} {RNA1310_4936.1, RNA1509_21738} {RNA1509_21738, RNA815_10185}
11.	MligTC455_18135	127	2.65	Mlig455_000520	Neo: Irradiation Age: Down-Up-Down, logFC(26M/2M)=-0.441	CRAMP1	1.723	-	-	0.741	-	-	0.982	Mlig455_000520 {REF} {Length: 4020} {TRANSSPLICED} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=20.4]} {Human: ENSG00000007545, CRAMP1, cramped chromatin regulator homolog 1, [RH, Score=134, Expect=2e-31]} {Mouse: ENSMUSG00000038002, Cramp1l, cramped chromatin regulator homolog 1, [RH, Score=134, Expect=1e-31]} {Dmel: FBgn0000376, crm, cramped, [RH, Score=145, Expect=2e-35]} {Smed: dd_Smed_v6_6124_0_1, dd_Smed_v6_6124_0_1, [RH, Score=268, Expect=1e-78]} {RNA1509_20088} {RNA1310_14330, RNA1509_20088} {RNA1509_20088, RNA815_29842}
12.	MligTC455_24357	43	0.9	Mlig455_039879	Neo: Irradiation Age: Up-Down-Down		1.702	-	-	0.954	-	-	0.748	Mlig455_039879 {REF} {Length: 1214} {RNA1509_54838} {RNA1310_110445} {RNA815_7764}
13.	MligTC455_38671	32	0.67	Mlig455_020877, Mlig455_060658	Neo: - Age: -	MAP3K7, RTL1	0.975	-	-	-	-	-	0.975	Mlig455_020877 {REF} {Length: 1966} {Pfam: Protein kinase domain [PF00069.27, score=59.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=59.0]; MraW methylase family [PF01795.21, score=24.9]} {Human: ENSG00000135341, MAP3K7, mitogen-activated protein kinase kinase kinase 7, [Score=70.5, Expect=2e-12]; ENSG00000130758, MAP3K10, mitogen-activated protein kinase kinase kinase 10, [Score=69.3, Expect=7e-12]} {Mouse: ENSMUSG00000040390, Map3k10, mitogen-activated protein kinase kinase kinase 10, [Score=70.9, Expect=1e-12]; ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=70.1, Expect=1e-12]} {Dmel: FBgn0000723, FER, FER tyrosine kinase, [Score=63.5, Expect=2e-10]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=56.2, Expect=2e-08]} {Smed: dd_Smed_v6_8571_0_1, dd_Smed_v6_8571_0_1, [Score=64.3, Expect=7e-11]} {RNA1509_47567} {RNA1310_9609} {RNA815_3249.1} Mlig455_060658 {REF} {Length: 6013} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=100.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=89.2]; Protein kinase domain [PF00069.27, score=56.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=56.1]; Integrase zinc binding domain [PF17921.3, score=47.1]; Integrase core domain [PF00665.28, score=44.2]; MraW methylase family [PF01795.21, score=20.5]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=88.2, Expect=1e-16]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=71.6, Expect=1e-11]; ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=71.2, Expect=6e-12]; ENSMUSG00000040390, Map3k10, mitogen-activated protein kinase kinase kinase 10, [Score=68.9, Expect=5e-11]} {Dmel: FBgn0000723, FER, FER tyrosine kinase, [Score=62.4, Expect=2e-09]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=56.6, Expect=1e-07]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=309, Expect=2e-87]} {RNA1509_24311} {RNA1310_9609} {RNA815_3249.1}
14.	MligTC455_03252	21	0.44	Mlig455_048683	Neo: - Age: -		0.971	-	-	-	-	-	0.971	Mlig455_048683 {REF} {Length: 419} {NoTransDecoderORF} {RNA1509_34103} {RNA1310_15969} {RNA815_36583.1}
15.	MligTC455_51693	167	3.49	Mlig455_044256	Neo: Int S/G2/M Age: - Region-enriched R5: 1.641/0.03760	DLGAP5	0.966	-	0.966	-	-	-	-	Mlig455_044256 {REF} {Length: 4473} {TRANSSPLICED} {Pfam: Guanylate-kinase-associated protein (GKAP) protein [PF03359.15, score=72.7]} {Human: ENSG00000126787, DLGAP5, DLG associated protein 5, [RH, Score=56.6, Expect=2e-07]} {Mouse: ENSMUSG00000037544, Dlgap5, DLG associated protein 5, [RH, Score=62.0, Expect=3e-09]} {Dmel: FBgn0034200, Gbp2, Growth-blocking peptide 2, [Score=56.2, Expect=1e-07]} {RNA1509_26988, RNA1509_28231, RNA1509_36821} {RNA1310_11539, RNA1509_28231, RNA1509_36821} {RNA1509_28231, RNA1509_36821, RNA815_2058}
16.	MligTC455_14987	120	2.51	Mlig455_035861	Neo: - Age: logFC(26M/2M)=-0.513 Region-enriched R5: 3.064/0.03582		0.963	-	-	0.963	-	-	-	Mlig455_035861 {REF} {Length: 1791} {RNA1509_35962, RNA1509_38914, RNA1509_41630, RNA1509_9548} {RNA1310_24349, RNA1509_35962, RNA1509_38914, RNA1509_41630, RNA1509_9548} {RNA1509_35962, RNA1509_38914, RNA1509_41630, RNA1509_9548, RNA815_6020}
17.	MligTC455_24098	243	5.06	Mlig455_047362	Neo: - Age: - Region-enriched R2: 2.626/0.03951	FAXDC2	0.962	-	-	0.962	-	-	-	Mlig455_047362 {REF} {Length: 4577} {TRANSSPLICED} {Pfam: Protein-tyrosine phosphatase [PF00102.29, score=278.8]; CRAL/TRIO domain [PF00650.22, score=88.0]; Fatty acid hydroxylase superfamily [PF04116.15, score=79.0]; Divergent CRAL/TRIO domain [PF13716.8, score=44.1]; CRAL/TRIO, N-terminal domain [PF03765.17, score=23.7]; Dual specificity phosphatase, catalytic domain [PF00782.22, score=21.5]; Tyrosine phosphatase family [PF13350.8, score=19.2]} {Human: ENSG00000170271, FAXDC2, fatty acid hydroxylase domain containing 2, [RH, Score=343, Expect=9e-110]} {Mouse: ENSMUSG00000086962, Gm12248, predicted gene 12248, [RH, Score=290, Expect=4e-90]} {Dmel: FBgn0030485, CG1998, [RH, Score=345, Expect=1e-109]} {Celegans: WBGene00009902, drd-1, Dietary restriction down regulated, [Score=226, Expect=2e-67]} {Smed: dd_Smed_v6_2938_0_1, dd_Smed_v6_2938_0_1, [RH, Score=356, Expect=4e-115]} {RNA1509_5175, RNA1509_59344} {RNA1310_5478, RNA1509_59344} {RNA1509_59344, RNA815_6345}

Berezikov Lab - 2020-2021 © ERIBA