TomoSeq data search

Data search

Results for MligTC455_38671

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_38671

32

0.67

Mlig455_020877, Mlig455_060658

Neo: -

Age: -

MAP3K7, RTL1

Mlig455_020877 {REF} {Length: 1966} {Pfam: Protein kinase domain [PF00069.27, score=59.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=59.0]; MraW methylase family [PF01795.21, score=24.9]} {Human: ENSG00000135341, MAP3K7, mitogen-activated protein kinase kinase kinase 7, [Score=70.5, Expect=2e-12]; ENSG00000130758, MAP3K10, mitogen-activated protein kinase kinase kinase 10, [Score=69.3, Expect=7e-12]} {Mouse: ENSMUSG00000040390, Map3k10, mitogen-activated protein kinase kinase kinase 10, [Score=70.9, Expect=1e-12]; ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=70.1, Expect=1e-12]} {Dmel: FBgn0000723, FER, FER tyrosine kinase, [Score=63.5, Expect=2e-10]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=56.2, Expect=2e-08]} {Smed: dd_Smed_v6_8571_0_1, dd_Smed_v6_8571_0_1, [Score=64.3, Expect=7e-11]} {RNA1509_47567} {RNA1310_9609} {RNA815_3249.1}

Mlig455_060658 {REF} {Length: 6013} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=100.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=89.2]; Protein kinase domain [PF00069.27, score=56.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=56.1]; Integrase zinc binding domain [PF17921.3, score=47.1]; Integrase core domain [PF00665.28, score=44.2]; MraW methylase family [PF01795.21, score=20.5]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=88.2, Expect=1e-16]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=71.6, Expect=1e-11]; ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=71.2, Expect=6e-12]; ENSMUSG00000040390, Map3k10, mitogen-activated protein kinase kinase kinase 10, [Score=68.9, Expect=5e-11]} {Dmel: FBgn0000723, FER, FER tyrosine kinase, [Score=62.4, Expect=2e-09]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=56.6, Expect=1e-07]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=309, Expect=2e-87]} {RNA1509_24311} {RNA1310_9609} {RNA815_3249.1}

Cumulative graph for MligTC455_38671

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-0.046	1.162	0.99993	1.00000
RegionR2	0.432	1.162	0.99985	1.00000
RegionR3	0.067	1.162	0.99996	1.00000
RegionR4	-0.972	1.162	0.99985	1.00000
RegionR5	-0.448	1.162	0.99993	1.00000
RegionR6	-0.497	1.162	0.99994	1.00000
RegionR7	0.309	1.162	0.99996	1.00000
RegionR8	1.156	1.162	0.99997	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-0.986	1.162	0.99995	1.00000
RegenerationR2	3.609	1.162	0.02362	0.25247
RegenerationR3	2.763	1.162	0.23204	0.66671
RegenerationR4	3.271	1.162	0.07220	0.42734
RegenerationR5	4.093	1.162	0.01403	0.20700
RegenerationR6	3.932	1.162	0.06974	0.33096
RegenerationBL	-0.504	1.162	0.74654	1.00000
RegenerationTP	2.73	1.162	0.36554	0.80407

Genes with expression patterns similar to MligTC455_38671

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_38671	32	0.67	Mlig455_020877, Mlig455_060658	Neo: - Age: -	MAP3K7, RTL1	3	-	-	-	1.000	1.000	1.000	Mlig455_020877 {REF} {Length: 1966} {Pfam: Protein kinase domain [PF00069.27, score=59.0]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=59.0]; MraW methylase family [PF01795.21, score=24.9]} {Human: ENSG00000135341, MAP3K7, mitogen-activated protein kinase kinase kinase 7, [Score=70.5, Expect=2e-12]; ENSG00000130758, MAP3K10, mitogen-activated protein kinase kinase kinase 10, [Score=69.3, Expect=7e-12]} {Mouse: ENSMUSG00000040390, Map3k10, mitogen-activated protein kinase kinase kinase 10, [Score=70.9, Expect=1e-12]; ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=70.1, Expect=1e-12]} {Dmel: FBgn0000723, FER, FER tyrosine kinase, [Score=63.5, Expect=2e-10]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=56.2, Expect=2e-08]} {Smed: dd_Smed_v6_8571_0_1, dd_Smed_v6_8571_0_1, [Score=64.3, Expect=7e-11]} {RNA1509_47567} {RNA1310_9609} {RNA815_3249.1} Mlig455_060658 {REF} {Length: 6013} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.5]; RNase H-like domain found in reverse transcriptase [PF17919.3, score=100.5]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=89.2]; Protein kinase domain [PF00069.27, score=56.1]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=56.1]; Integrase zinc binding domain [PF17921.3, score=47.1]; Integrase core domain [PF00665.28, score=44.2]; MraW methylase family [PF01795.21, score=20.5]} {Human: ENSG00000254656, RTL1, retrotransposon Gag like 1, [Score=88.2, Expect=1e-16]} {Mouse: ENSMUSG00000075592, Nynrin, NYN domain and retroviral integrase containing, [Score=71.6, Expect=1e-11]; ENSMUSG00000028284, Map3k7, mitogen-activated protein kinase kinase kinase 7, [Score=71.2, Expect=6e-12]; ENSMUSG00000040390, Map3k10, mitogen-activated protein kinase kinase kinase 10, [Score=68.9, Expect=5e-11]} {Dmel: FBgn0000723, FER, FER tyrosine kinase, [Score=62.4, Expect=2e-09]} {Celegans: WBGene00003931, pat-4, Integrin-linked protein kinase homolog pat-4, [Score=56.6, Expect=1e-07]} {Smed: dd_Smed_v6_6563_0_1, dd_Smed_v6_6563_0_1, [Score=309, Expect=2e-87]} {RNA1509_24311} {RNA1310_9609} {RNA815_3249.1}
2.	MligTC455_15852	51	1.07	Mlig455_003883	Neo: - Age: -	BRF1	0.988	-	-	-	-	0.988	-	Mlig455_003883 {REF} {Length: 2870} {TRANSSPLICED} {Pfam: Transcription factor TFIIB repeat [PF00382.21, score=158.9]; Brf1-like TBP-binding domain [PF07741.15, score=57.5]; TFIIB zinc-binding [PF08271.14, score=40.6]; Cyclin, N-terminal domain [PF00134.25, score=23.2]} {Human: ENSG00000185024, BRF1, BRF1, RNA polymerase III transcription initiation factor subunit, [RH, Score=387, Expect=2e-123]} {Mouse: ENSMUSG00000011158, Brf1, BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit, [RH, Score=357, Expect=2e-112]} {Dmel: FBgn0038499, Brf, [RH, Score=330, Expect=2e-102]} {Celegans: WBGene00000271, brf-1, BRF (Transcription factor) homolog, [RH, Score=325, Expect=9e-100]} {Smed: dd_Smed_v6_1437_0_1, dd_Smed_v6_1437_0_1, [RH, Score=229, Expect=6e-66]} {RNA1509_17011} {RNA1310_6240.1} {RNA815_10656}
3.	MligTC455_31245	49	1.02	Mlig455_022851	Neo: Irradiation Age: -	GABBR2	0.975	-	-	-	-	-	0.975	Mlig455_022851 {REF} {Length: 2914} {Pfam: 7 transmembrane sweet-taste receptor of 3 GCPR [PF00003.24, score=162.3]; Receptor family ligand binding region [PF01094.30, score=112.4]} {Human: ENSG00000136928, GABBR2, gamma-aminobutyric acid type B receptor subunit 2, [Score=295, Expect=5e-87]} {Mouse: ENSMUSG00000039809, Gabbr2, gamma-aminobutyric acid (GABA) B receptor, 2, [Score=294, Expect=8e-87]} {Dmel: FBgn0027575, GABA-B-R2, metabotropic GABA-B receptor subtype 2, [Score=258, Expect=4e-73]} {Celegans: WBGene00021528, gbb-1, GABA B receptor subunit; GABAB1 receptor subunit, [Score=237, Expect=7e-67]} {Smed: dd_Smed_v6_51663_0_1, dd_Smed_v6_51663_0_1, [Score=130, Expect=6e-34]} {RNA1509_26993} {RNA1310_7927.1} {RNA815_4866.1}
4.	MligTC455_44743	509	10.61	Mlig455_019311, Mlig455_019532	Neo: Int S/G2/M Age: -	NUDC, NUDCD3	0.967	-	-	-	0.967	-	-	Mlig455_019311 {REF} {Length: 1886} {TRANSSPLICED} {Pfam: N-terminal conserved domain of Nudc. [PF14050.8, score=57.6]; CS domain [PF04969.18, score=20.1]} {Human: ENSG00000090273, NUDC, nuclear distribution C, dynein complex regulator, [Score=89.0, Expect=8e-20]} {Mouse: ENSMUSG00000053838, Nudcd3, NudC domain containing 3, [Score=99.4, Expect=1e-23]} {Dmel: FBgn0021768, nudC, [Score=94.4, Expect=5e-22]} {Celegans: WBGene00003829, nud-1, Aspergillus NUclear Division related; NUD-1, [Score=99.0, Expect=7e-24]} {Smed: dd_Smed_v6_7023_0_2, dd_Smed_v6_7023_0_2, [Score=185, Expect=5e-57]} {RNA1509_25713} {RNA1310_26745} {RNA815_9280} Mlig455_019532 {REF} {Length: 1905} {TRANSSPLICED} {Pfam: N-terminal conserved domain of Nudc. [PF14050.8, score=57.4]; CS domain [PF04969.18, score=34.3]} {Human: ENSG00000015676, NUDCD3, NudC domain containing 3, [RH, Score=193, Expect=2e-58]} {Mouse: ENSMUSG00000053838, Nudcd3, NudC domain containing 3, [RH, Score=184, Expect=5e-55]} {Dmel: FBgn0051251, CG31251, [RH, Score=138, Expect=2e-38]} {Celegans: WBGene00003829, nud-1, Aspergillus NUclear Division related; NUD-1, [Score=128, Expect=3e-34]} {Smed: dd_Smed_v6_7023_0_2, dd_Smed_v6_7023_0_2, [RH, Score=254, Expect=3e-83]} {RNA1509_19603, RNA1509_25713, RNA1509_35245} {RNA1310_26745, RNA1509_19603, RNA1509_25713, RNA1509_35245} {RNA1509_19603, RNA1509_25713, RNA1509_35245, RNA815_9280}
5.	MligTC455_32473	81	1.69	Mlig455_028982	Neo: - Age: Up-Down-Down, logFC(26M/2M)=-0.441		0.966	-	-	-	0.966	-	-	Mlig455_028982 {REF} {Length: 3865} {RNA1509_16135} {RNA1310_10285} {RNA815_1142}
6.	MligTC455_28552	131	2.72	Mlig455_070154	Neo: - Age: Up-Down-Down		0.963	-	-	-	-	0.963	-	Mlig455_070154 {REF} {Length: 5396} {TRANSSPLICED} {RNA1509_16314} {RNA1310_1850, RNA1509_16314} {RNA1509_16314, RNA815_2655.1}
7.	MligTC455_28213	41	0.86	Mlig455_043975	Neo: - Age: - Region-enriched R4: 1.672/0.04531		0.962	-	-	-	-	0.962	-	Mlig455_043975 {REF} {Length: 2640} {Mouse: ENSMUSG00000070331, Qrich2, glutamine rich 2, [Score=58.2, Expect=6e-08]} {RNA1509_245} {RNA1310_71097} {RNA815_18938.2}
8.	MligTC455_18135	127	2.65	Mlig455_000520	Neo: Irradiation Age: Down-Up-Down, logFC(26M/2M)=-0.441	CRAMP1	0.959	-	-	-	-	-	0.959	Mlig455_000520 {REF} {Length: 4020} {TRANSSPLICED} {Pfam: Myb-like DNA-binding domain [PF00249.33, score=20.4]} {Human: ENSG00000007545, CRAMP1, cramped chromatin regulator homolog 1, [RH, Score=134, Expect=2e-31]} {Mouse: ENSMUSG00000038002, Cramp1l, cramped chromatin regulator homolog 1, [RH, Score=134, Expect=1e-31]} {Dmel: FBgn0000376, crm, cramped, [RH, Score=145, Expect=2e-35]} {Smed: dd_Smed_v6_6124_0_1, dd_Smed_v6_6124_0_1, [RH, Score=268, Expect=1e-78]} {RNA1509_20088} {RNA1310_14330, RNA1509_20088} {RNA1509_20088, RNA815_29842}
9.	MligTC455_49109	146	3.04	Mlig455_006530	Neo: - Age: Down-Up-Down, logFC(26M/2M)=-0.392		0.958	-	-	-	0.958	-	-	Mlig455_006530 {REF} {Length: 1458} {TRANSSPLICED} {Pfam: Transmembrane family 220, helix [PF15071.8, score=62.3]} {Mouse: ENSMUSG00000050270, Tmem220, transmembrane protein 220, [Score=62.4, Expect=6e-12]} {RNA1509_42585} {RNA1310_39687, RNA1509_42585} {RNA1509_42585, RNA815_19504}
10.	MligTC455_09922	12	0.25	Mlig455_033165	Neo: - Age: -		0.957	-	-	-	-	-	0.957	Mlig455_033165 {REF} {Length: 616} {NoTransDecoderORF} {RNA1310_72784} {RNA815_39906}
11.	MligTC455_15385	28	0.57	Mlig455_011155	Neo: - Age: -	ARF6	0.957	-	-	-	-	-	0.957	Mlig455_011155 {REF} {Length: 2428} {Pfam: ADP-ribosylation factor family [PF00025.23, score=242.3]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=55.0]; Ras family [PF00071.24, score=51.9]; Signal recognition particle receptor beta subunit [PF09439.12, score=48.8]; G-protein alpha subunit [PF00503.22, score=38.0]; Gtr1/RagA G protein conserved region [PF04670.14, score=29.5]; 50S ribosome-binding GTPase [PF01926.25, score=22.1]; 6-phosphofructo-2-kinase [PF01591.20, score=17.9]} {Human: ENSG00000165527, ARF6, ADP ribosylation factor 6, [RH, Score=295, Expect=4e-103]} {Mouse: ENSMUSG00000044147, Arf6, ADP-ribosylation factor 6, [RH, Score=295, Expect=3e-103]} {Dmel: FBgn0013750, Arf51F, ADP ribosylation factor at 51F, [RH, Score=290, Expect=3e-101]} {Celegans: WBGene00000184, arf-6, ADP-Ribosylation Factor related, [RH, Score=282, Expect=2e-98]} {Smed: dd_Smed_v6_2125_0_1, dd_Smed_v6_2125_0_1, [RH, Score=277, Expect=1e-96]} {RNA1509_33843, RNA1509_35985} {RNA1310_23978, RNA1509_33843} {RNA1509_33843, RNA815_10175}
12.	MligTC455_24973	42	0.88	Mlig455_065756	Neo: - Age: -		0.957	-	-	-	-	-	0.957	Mlig455_065756 {REF} {Length: 759} {RNA1509_29619} {RNA1310_124411} {RNA815_54604}
13.	MligTC455_27031	33	0.69	Mlig455_055855	Neo: - Age: -	MTMR14	0.955	-	-	-	-	-	0.955	Mlig455_055855 {REF} {Length: 2462} {TRANSSPLICED} {Pfam: Myotubularin-like phosphatase domain [PF06602.16, score=24.0]} {Human: ENSG00000163719, MTMR14, myotubularin related protein 14, [RH, Score=254, Expect=9e-78]} {Mouse: ENSMUSG00000030269, Mtmr14, myotubularin related protein 14, [RH, Score=251, Expect=6e-76]} {Dmel: FBgn0027506, EDTP, Egg-derived tyrosine phosphatase, [RH, Score=250, Expect=7e-75]} {Smed: dd_Smed_v6_6564_0_4, dd_Smed_v6_6564_0_4, [RH, Score=278, Expect=4e-88]} {RNA1509_26288, RNA1509_55802} {RNA1310_17788, RNA1509_26288, RNA1509_55802} {RNA1509_26288, RNA1509_55802, RNA815_7483.1}
14.	MligTC455_10791	35	0.74	Mlig455_004149	Neo: - Age: -	DAGLA	0.954	-	-	-	-	-	0.954	Mlig455_004149 {REF} {Length: 4075} {tRNA: Met(CAT),pseudo, score=32.0} {Human: ENSG00000134780, DAGLA, diacylglycerol lipase alpha, [Score=111, Expect=8e-25]} {Mouse: ENSMUSG00000035735, Dagla, diacylglycerol lipase, alpha, [Score=110, Expect=1e-24]} {Dmel: FBgn0261244, inaE, inactivation no afterpotential E, [Score=117, Expect=4e-27]} {RNA1509_21520} {RNA1310_2551} {RNA815_2115}
15.	MligTC455_15083	12	0.26	Mlig455_047189	Neo: - Age: -		0.952	-	-	-	-	0.952	-	Mlig455_047189 {REF} {Length: 103} {NoTransDecoderORF}
16.	MligTC455_19719	160	3.32	Mlig455_062741	Neo: - Age: -	ANKUB1	0.951	-	-	-	-	0.951	-	Mlig455_062741 {REF} {Length: 2758} {Pfam: Ubiquitin family [PF00240.25, score=30.6]} {Human: ENSG00000206199, ANKUB1, ankyrin repeat and ubiquitin domain containing 1, [Score=268, Expect=2e-81]} {Mouse: ENSMUSG00000074591, Ankub1, ankrin repeat and ubiquitin domain containing 1, [Score=248, Expect=3e-74]} {Smed: dd_Smed_v6_9027_0_1, dd_Smed_v6_9027_0_1, [Score=470, Expect=8e-159]} {RNA1509_38601} {RNA1310_11316.1} {RNA815_657.1}
17.	MligTC455_11995	76	1.59	Mlig455_057583	Neo: Germline Age: -	CELF3	0.95	-	-	-	0.950	-	-	Mlig455_057583 {REF} {Length: 1910} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=167.1]; RNA recognition motif [PF16367.7, score=23.8]} {Human: ENSG00000159409, CELF3, CUGBP Elav-like family member 3, [RH, Score=400, Expect=8e-136]; ENSG00000161082, CELF5, CUGBP Elav-like family member 5, [RH, Score=395, Expect=1e-133]; ENSG00000273025, AC009690.3, novel transcript, [RH, Score=382, Expect=2e-128]; ENSG00000140488, CELF6, CUGBP Elav-like family member 6, [RH, Score=382, Expect=2e-128]} {Mouse: ENSMUSG00000028137, Celf3, CUGBP, Elav-like family member 3, [RH, Score=399, Expect=1e-134]; ENSMUSG00000024268, Celf4, CUGBP, Elav-like family member 4, [RH, Score=394, Expect=1e-132]; ENSMUSG00000032297, Celf6, CUGBP, Elav-like family member 6, [RH, Score=380, Expect=6e-128]} {Dmel: FBgn0000114, bru1, bruno 1, [RH, Score=322, Expect=1e-101]} {Celegans: WBGene00006807, unc-75, Putative RNA-binding protein, [Score=252, Expect=2e-78]} {Smed: dd_Smed_v6_14010_0_2, dd_Smed_v6_14010_0_2, [RH, Score=399, Expect=8e-135]} {RNA1509_28732} {RNA1310_41106} {RNA815_33683}

Berezikov Lab - 2020-2021 © ERIBA