M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_31261

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_31261 3871 80.65 Mlig455_044007, Mlig455_044024

Neo: -

Age: logFC(26M/2M)=0.187

 HSD17B12

Mlig455_044007 {REF} {Length: 2021} {TRANSSPLICED} {Pfam: short chain dehydrogenase [PF00106.27, score=126.4]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=79.5]; KR domain [PF08659.12, score=29.0]} {Human: ENSG00000149084, HSD17B12, hydroxysteroid 17-beta dehydrogenase 12, [RH, Score=232, Expect=4e-74]} {Mouse: ENSMUSG00000027195, Hsd17b12, hydroxysteroid (17-beta) dehydrogenase 12, [RH, Score=218, Expect=9e-69]} {Dmel: FBgn0029975, spidey, [RH, Score=222, Expect=2e-70]} {Celegans: WBGene00002891, let-767, Very-long-chain 3-oxooacyl-coA reductase let-767, [RH, Score=175, Expect=2e-52]} {Smed: dd_Smed_v6_2464_0_1, dd_Smed_v6_2464_0_1, [RH, Score=256, Expect=2e-84]} {RNA1509_11272, RNA1509_32689} {RNA1310_26763, RNA1509_11272, RNA1509_32689} {RNA1509_11272, RNA1509_32689, RNA815_10986}

Mlig455_044024 {REF} {Length: 398} {Pfam: Domain of unknown function (DUF4081) [PF13312.8, score=28.2]; Ribosomal protein S31e [PF17067.7, score=22.7]} {RNA1509_37248} {RNA1310_104355} {RNA815_3780.1}

Cumulative graph for MligTC455_31261

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 0.9 6.405 0.07498 0.60593
RegionR2 -0.758 6.405 0.02528 0.17793
RegionR3 0.538 6.405 0.04305 0.36259
RegionR4 0.775 6.405 0.01211 0.07046
RegionR5 0.529 6.405 0.03502 0.14472
RegionR6 -0.148 6.405 0.59269 1.00000
RegionR7 -1.023 6.405 0.00301 0.07704
RegionR8 -0.813 6.405 0.04347 0.40880

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.579 6.405 0.34954 1.00000
RegenerationR2 -0.142 6.405 0.68041 0.94903
RegenerationR3 -0.516 6.405 0.13310 0.55671
RegenerationR4 -0.088 6.405 0.79873 0.98582
RegenerationR5 0.448 6.405 0.18231 0.61216
RegenerationR6 0.495 6.405 0.15297 0.47883
RegenerationBL 0.58 6.405 0.09775 0.36696
RegenerationTP 0.139 6.405 0.73831 1.00000


Genes with expression patterns similar to MligTC455_31261

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_31261 3871 80.65 Mlig455_044007, Mlig455_044024

Neo: -

Age: logFC(26M/2M)=0.187

 HSD17B12 6 1.000 1.000 1.000 1.000 1.000 1.000

Mlig455_044007 {REF} {Length: 2021} {TRANSSPLICED} {Pfam: short chain dehydrogenase [PF00106.27, score=126.4]; Enoyl-(Acyl carrier protein) reductase [PF13561.8, score=79.5]; KR domain [PF08659.12, score=29.0]} {Human: ENSG00000149084, HSD17B12, hydroxysteroid 17-beta dehydrogenase 12, [RH, Score=232, Expect=4e-74]} {Mouse: ENSMUSG00000027195, Hsd17b12, hydroxysteroid (17-beta) dehydrogenase 12, [RH, Score=218, Expect=9e-69]} {Dmel: FBgn0029975, spidey, [RH, Score=222, Expect=2e-70]} {Celegans: WBGene00002891, let-767, Very-long-chain 3-oxooacyl-coA reductase let-767, [RH, Score=175, Expect=2e-52]} {Smed: dd_Smed_v6_2464_0_1, dd_Smed_v6_2464_0_1, [RH, Score=256, Expect=2e-84]} {RNA1509_11272, RNA1509_32689} {RNA1310_26763, RNA1509_11272, RNA1509_32689} {RNA1509_11272, RNA1509_32689, RNA815_10986}

Mlig455_044024 {REF} {Length: 398} {Pfam: Domain of unknown function (DUF4081) [PF13312.8, score=28.2]; Ribosomal protein S31e [PF17067.7, score=22.7]} {RNA1509_37248} {RNA1310_104355} {RNA815_3780.1}
2. MligTC455_43857 3330 69.38 Mlig455_045192

Neo: -

Age: logFC(26M/2M)=-0.177

 LAMP1 4.177 0.774 0.759 - 0.956 0.960 0.728 Mlig455_045192 {REF} {Length: 3284} {Pfam: Lysosome-associated membrane glycoprotein (Lamp) [PF01299.19, score=70.0]} {Human: ENSG00000185896, LAMP1, lysosomal associated membrane protein 1, [RH, Score=79.3, Expect=2e-15]} {Mouse: ENSMUSG00000031447, Lamp1, lysosomal-associated membrane protein 1, [RH, Score=84.0, Expect=5e-17]} {Dmel: FBgn0032949, Lamp1, [RH, Score=73.6, Expect=4e-14]} {Celegans: WBGene00015471, lmp-2, LAMP (Lysosome-associated membrane protein) homolog, [RH, Score=63.5, Expect=5e-11]} {Smed: dd_Smed_v6_2131_0_1, dd_Smed_v6_2131_0_1, [RH, Score=89.7, Expect=3e-19]} {RNA1509_19307, RNA1509_41596, RNA1509_46839, RNA1509_52291, RNA1509_842, RNA1509_8561} {RNA1310_13759.1, RNA1509_19307, RNA1509_41596, RNA1509_46839, RNA1509_52291, RNA1509_842, RNA1509_8561} {RNA1509_19307, RNA1509_41596, RNA1509_46839, RNA1509_52291, RNA1509_842, RNA1509_8561, RNA815_3563.1}
3. MligTC455_34207 12055 251.14 Mlig455_035831

Neo: -

Age: logFC(26M/2M)=0.753

Region-enriched R3: 1.887/0.00004

Regeneration-upregulated TP: 2.075

Regeneration-enriched TP: 2.075

 AC099489.1 2.598 0.805 - - 0.980 - 0.813 Mlig455_035831 {REF} {Length: 10908} {Pfam: Lipoprotein amino terminal region [PF01347.24, score=126.2]; Domain of unknown function (DUF1943) [PF09172.13, score=95.1]; von Willebrand factor type D domain [PF00094.27, score=31.2]} {Human: ENSG00000188897, AC099489.1, vitellogenin, [Score=65.5, Expect=2e-09]} {Mouse: ENSMUSG00000020609, Apob, apolipoprotein B, [Score=57.8, Expect=3e-07]} {Dmel: FBgn0087002, apolpp, apolipophorin, [Score=77.0, Expect=4e-13]} {Smed: dd_Smed_v6_636_0_1, dd_Smed_v6_636_0_1, [Score=145, Expect=4e-34]} {RNA1509_19, RNA1509_35407} {RNA1310_78, RNA1509_35407} {RNA1509_35407, RNA815_36.1}
4. MligTC455_23228 1772 36.92 Mlig455_004555

Neo: -

Age: -

Region-enriched R3: 1.605/0.00005

 2.561 - 0.709 - 0.979 0.873 - Mlig455_004555 {REF} {Length: 1688} {TRANSSPLICED} {RNA1509_12452, RNA1509_28256} {RNA1310_32627, RNA1509_12452} {RNA1509_12452, RNA815_16896}
5. MligTC455_53351 1725 35.93 Mlig455_036373

Neo: -

Age: -

Region-enriched R4: 1.489/0.00145
Region-enriched R5: 1.350/0.00010

 DDO 1.697 - - - 0.965 - 0.732 Mlig455_036373 {REF} {Length: 2613} {TRANSSPLICED} {Pfam: FAD dependent oxidoreductase [PF01266.26, score=119.0]} {Human: ENSG00000203797, DDO, D-aspartate oxidase, [Score=163, Expect=2e-46]} {Mouse: ENSMUSG00000063428, Ddo, D-aspartate oxidase, [Score=162, Expect=2e-46]} {Dmel: FBgn0033543, CG12338, [Score=166, Expect=2e-48]} {Celegans: WBGene00008127, ddo-1, D-aspartate oxidase 1, [Score=137, Expect=2e-37]} {Smed: dd_Smed_v6_3560_0_1, dd_Smed_v6_3560_0_1, [Score=137, Expect=1e-37]} {RNA1509_14965, RNA1509_24164, RNA1509_8790} {RNA1310_23222, RNA1509_14965, RNA1509_24164} {RNA1509_14965, RNA1509_24164, RNA815_10774}
6. MligTC455_51107 671 13.97 Mlig455_003778, Mlig455_045880, Mlig455_065735, Mlig455_068615

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-2.260

Region-enriched R4: 4.005/0.00030

 DUT 0.978 - - - - 0.978 -

Mlig455_003778 {REF} {Length: 758} {TRANSSPLICED} {Pfam: dUTPase [PF00692.21, score=115.5]} {Human: ENSG00000128951, DUT, deoxyuridine triphosphatase, [Score=99.8, Expect=6e-26]} {Mouse: ENSMUSG00000027203, Dut, deoxyuridine triphosphatase, [Score=97.1, Expect=4e-25]} {Dmel: FBgn0250837, dUTPase, Deoxyuridine triphosphatase, [Score=97.4, Expect=4e-25]} {Celegans: WBGene00010609, dut-1, DeoxyUTPase; Deoxyuridinetriphosphatase, [Score=100, Expect=2e-24]} {Smed: dd_Smed_v6_2921_0_1, dd_Smed_v6_2921_0_1, [Score=94.0, Expect=3e-24]} {RNA1509_34347} {RNA1310_47056} {RNA815_19475}

Mlig455_045880 {REF} {Length: 763} {TRANSSPLICED} {Pfam: dUTPase [PF00692.21, score=115.2]} {Human: ENSG00000128951, DUT, deoxyuridine triphosphatase, [Score=103, Expect=8e-28]} {Mouse: ENSMUSG00000027203, Dut, deoxyuridine triphosphatase, [Score=101, Expect=6e-27]} {Dmel: FBgn0250837, dUTPase, Deoxyuridine triphosphatase, [Score=101, Expect=5e-27]} {Celegans: WBGene00010609, dut-1, DeoxyUTPase; Deoxyuridinetriphosphatase, [Score=104, Expect=3e-26]} {Smed: dd_Smed_v6_2921_0_1, dd_Smed_v6_2921_0_1, [Score=97.1, Expect=8e-26]} {RNA1509_34347} {RNA1310_47056} {RNA815_19475}

Mlig455_065735 {REF} {Length: 763} {TRANSSPLICED} {Pfam: dUTPase [PF00692.21, score=115.2]} {Human: ENSG00000128951, DUT, deoxyuridine triphosphatase, [Score=103, Expect=8e-28]} {Mouse: ENSMUSG00000027203, Dut, deoxyuridine triphosphatase, [Score=101, Expect=6e-27]} {Dmel: FBgn0250837, dUTPase, Deoxyuridine triphosphatase, [Score=101, Expect=5e-27]} {Celegans: WBGene00010609, dut-1, DeoxyUTPase; Deoxyuridinetriphosphatase, [Score=104, Expect=3e-26]} {Smed: dd_Smed_v6_2921_0_1, dd_Smed_v6_2921_0_1, [Score=97.1, Expect=8e-26]} {RNA1509_34347} {RNA1310_47056} {RNA815_19475}

Mlig455_068615 {REF} {Length: 864} {TRANSSPLICED} {Pfam: dUTPase [PF00692.21, score=115.2]} {Human: ENSG00000128951, DUT, deoxyuridine triphosphatase, [Score=103, Expect=8e-28]} {Mouse: ENSMUSG00000027203, Dut, deoxyuridine triphosphatase, [Score=101, Expect=6e-27]} {Dmel: FBgn0250837, dUTPase, Deoxyuridine triphosphatase, [Score=101, Expect=5e-27]} {Celegans: WBGene00010609, dut-1, DeoxyUTPase; Deoxyuridinetriphosphatase, [Score=104, Expect=3e-26]} {Smed: dd_Smed_v6_2921_0_1, dd_Smed_v6_2921_0_1, [Score=97.1, Expect=8e-26]} {RNA1509_34347} {RNA1310_47056, RNA1509_34347} {RNA1509_34347, RNA815_19475}
7. MligTC455_28113 6340 132.08 Mlig455_045392, Mlig455_045487

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=0.435

Region-enriched R3: 1.878/0.00333
Region-enriched R4: 1.592/0.02527

 0.975 - - - 0.975 - -

Mlig455_045392 {REF} {Length: 2281} {Smed: dd_Smed_v6_6676_0_1, dd_Smed_v6_6676_0_1, [RH, Score=47.4, Expect=1e-06]} {RNA1509_25906, RNA1509_4355, RNA1509_57788} {RNA1310_17519.1, RNA1509_25906, RNA1509_57788} {RNA1509_25906, RNA1509_57788, RNA815_4908.1}

Mlig455_045487 {REF} {Length: 2124} {Smed: dd_Smed_v6_6676_0_1, dd_Smed_v6_6676_0_1, [RH, Score=47.4, Expect=1e-06]} {RNA1509_15633, RNA1509_29436, RNA1509_4355, RNA1509_55376, RNA1509_5993, RNA1509_9901} {RNA1310_17519.1, RNA1509_15633, RNA1509_29436, RNA1509_4355, RNA1509_55376, RNA1509_5993, RNA1509_9901} {RNA1509_15633, RNA1509_29436, RNA1509_4355, RNA1509_55376, RNA1509_5993, RNA1509_9901, RNA815_4908.1}
8. MligTC455_26049 5227 108.9 Mlig455_026021

Neo: -

Age: -

 GCSH 0.973 - - - - 0.973 - Mlig455_026021 {REF} {Length: 2584} {Pfam: Glycine cleavage H-protein [PF01597.21, score=143.1]} {Human: ENSG00000140905, GCSH, glycine cleavage system protein H, [RH, Score=125, Expect=3e-36]} {Mouse: ENSMUSG00000034424, Gcsh, glycine cleavage system protein H (aminomethyl carrier), [RH, Score=128, Expect=8e-38]} {Dmel: FBgn0027945, ppl, pumpless, [RH, Score=120, Expect=6e-35]} {Celegans: WBGene00009918, gcsh-2, Glycine cleavage system H protein, [RH, Score=124, Expect=1e-36]} {Smed: dd_Smed_v6_1939_0_1, dd_Smed_v6_1939_0_1, [RH, Score=138, Expect=2e-42]} {RNA1509_15537, RNA1509_1611, RNA1509_8346} {RNA1310_18409.1, RNA1509_15537, RNA1509_1611, RNA1509_8346} {RNA1509_15537, RNA1509_1611, RNA1509_8346, RNA815_7854}
9. MligTC455_29380 506 10.54 Mlig455_005277, Mlig455_008879, Mlig455_049899, Mlig455_051138, Mlig455_066942

Neo: -

Age: Up-Down-Up

 0.968 - - - 0.968 - -

Mlig455_005277 {REF} {Length: 1167} {RNA1509_44206} {RNA1310_18727} {RNA815_16176.1}

Mlig455_008879 {REF} {Length: 185} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_44206} {RNA1310_16376} {RNA815_10254}

Mlig455_049899 {REF} {Length: 10665} {RNA1509_44206} {RNA1310_18727} {RNA815_16176.1}

Mlig455_051138 {REF} {Length: 560} {RNA1509_20190} {RNA1310_16376} {RNA815_10254}

Mlig455_066942 {REF} {Length: 3143} {RNA1509_44206} {RNA1310_18727} {RNA815_16176.1}
10. MligTC455_35515 2398 49.95 Mlig455_034939

Neo: Int S/G2/M

Age: -

Region-enriched R5: 1.231/0.00000

 KARS 0.965 - - - - 0.965 - Mlig455_034939 {REF} {Length: 3649} {Pfam: tRNA synthetases class II (D, K and N) [PF00152.22, score=261.5]; OB-fold nucleic acid binding domain [PF01336.27, score=50.4]; tRNA synthetases class II core domain (F) [PF01409.22, score=34.0]} {Human: ENSG00000065427, KARS, lysyl-tRNA synthetase, [RH, Score=773, Expect=0.0]} {Mouse: ENSMUSG00000031948, Kars, lysyl-tRNA synthetase, [RH, Score=781, Expect=0.0]} {Dmel: FBgn0027084, LysRS, Lysyl-tRNA synthetase, [RH, Score=728, Expect=0.0]} {Celegans: WBGene00002238, kars-1, Lysine--tRNA ligase, [RH, Score=726, Expect=0.0]} {Smed: dd_Smed_v6_1118_0_1, dd_Smed_v6_1118_0_1, [RH, Score=702, Expect=0.0]} {RNA1509_2595, RNA1509_46665, RNA1509_46914, RNA1509_7494} {RNA1310_12688, RNA1509_2595, RNA1509_46665, RNA1509_46914, RNA1509_7494} {RNA1509_2595, RNA1509_46665, RNA1509_46914, RNA1509_7494, RNA815_4471}
11. MligTC455_36727 2161 45.01 Mlig455_013407, Mlig455_013448

Neo: -

Age: logFC(26M/2M)=-0.438

Region-enriched R3: 1.447/0.00030

 0.959 - - - - - 0.959

Mlig455_013407 {REF} {Length: 3635} {RNA1509_12599, RNA1509_16053, RNA1509_17696, RNA1509_23340, RNA1509_38884, RNA1509_44611} {RNA1310_1688.1, RNA1509_12599, RNA1509_16053, RNA1509_17696, RNA1509_23340, RNA1509_38884, RNA1509_44611} {RNA1509_12599, RNA1509_16053, RNA1509_17696, RNA1509_23340, RNA1509_38884, RNA1509_44611, RNA815_14547}

Mlig455_013448 {REF} {Length: 3532} {RNA1509_17696} {RNA1310_1688.1} {RNA815_14547}
12. MligTC455_43763 1548 32.26 Mlig455_009134

Neo: -

Age: -

 ETFDH 0.954 - - - 0.954 - - Mlig455_009134 {REF} {Length: 3198} {TRANSSPLICED} {Pfam: Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S [PF05187.15, score=158.2]; FAD dependent oxidoreductase [PF01266.26, score=34.3]; NAD(P)-binding Rossmann-like domain [PF13450.8, score=32.5]; FAD binding domain [PF00890.26, score=32.1]; Thi4 family [PF01946.19, score=31.3]; Pyridine nucleotide-disulphide oxidoreductase [PF07992.16, score=27.3]; FAD-NAD(P)-binding [PF13454.8, score=23.5]; FAD binding domain [PF01494.21, score=19.2]; Alanine dehydrogenase/PNT, C-terminal domain [PF01262.23, score=18.7]; HI0933-like protein [PF03486.16, score=18.2]} {Human: ENSG00000171503, ETFDH, electron transfer flavoprotein dehydrogenase, [RH, Score=814, Expect=0.0]} {Mouse: ENSMUSG00000027809, Etfdh, electron transferring flavoprotein, dehydrogenase, [RH, Score=829, Expect=0.0]} {Dmel: FBgn0033465, Etf-QO, Electron transfer flavoprotein-ubiquinone oxidoreductase, [RH, Score=753, Expect=0.0]} {Celegans: WBGene00002855, let-721, Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial, [RH, Score=745, Expect=0.0]} {Smed: dd_Smed_v6_3785_0_1, dd_Smed_v6_3785_0_1, [RH, Score=872, Expect=0.0]} {RNA1509_2025, RNA1509_6739} {RNA1310_8787, RNA1509_2025, RNA1509_6739} {RNA1509_2025, RNA1509_6739, RNA815_3614}
13. MligTC455_42935 9858 205.38 Mlig455_001377

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.269

Region-enriched R4: 1.115/0.00000

 ATP5MC2 0.953 - - - - 0.953 - Mlig455_001377 {REF} {Length: 750} {TRANSSPLICED} {Pfam: ATP synthase subunit C [PF00137.23, score=42.6]} {Human: ENSG00000135390, ATP5MC2, ATP synthase membrane subunit c locus 2, [RH, Score=147, Expect=3e-46]; ENSG00000154518, ATP5MC3, ATP synthase membrane subunit c locus 3, [RH, Score=144, Expect=6e-45]; ENSG00000159199, ATP5MC1, ATP synthase membrane subunit c locus 1, [RH, Score=143, Expect=5e-45]} {Mouse: ENSMUSG00000062683, Atp5g2, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9), [RH, Score=147, Expect=2e-46]; ENSMUSG00000018770, Atp5g3, ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9), [RH, Score=142, Expect=2e-44]} {Dmel: FBgn0039830, ATPsynC, ATP synthase, subunit C, [RH, Score=147, Expect=2e-46]} {Celegans: WBGene00022336, Y82E9BR.3, ATP synthase lipid-binding protein, mitochondrial, [RH, Score=148, Expect=3e-47]} {Smed: dd_Smed_v6_401_0_1, dd_Smed_v6_401_0_1, [RH, Score=118, Expect=1e-35]} {RNA1509_1652, RNA1509_30579, RNA1509_3146, RNA1509_4539, RNA1509_58433} {RNA1310_47479, RNA1509_1652, RNA1509_30579, RNA1509_3146, RNA1509_4539, RNA1509_58433} {RNA1509_1652, RNA1509_30579, RNA1509_3146, RNA1509_4539, RNA1509_58433, RNA815_11384.2}
14. MligTC455_19571 263 5.49 Mlig455_003635

Neo: -

Age: -

 CRYZ 0.951 - - - - 0.951 - Mlig455_003635 {REF} {Length: 1497} {TRANSSPLICED} {Pfam: Zinc-binding dehydrogenase [PF00107.28, score=65.2]; Zinc-binding dehydrogenase [PF13602.8, score=47.1]; Alcohol dehydrogenase GroES-like domain [PF08240.14, score=35.1]} {Human: ENSG00000116791, CRYZ, crystallin zeta, [RH, Score=281, Expect=4e-93]} {Mouse: ENSMUSG00000028199, Cryz, crystallin, zeta, [RH, Score=286, Expect=4e-95]} {Dmel: FBgn0033883, CG16935, [RH, Score=70.9, Expect=2e-13]} {Celegans: WBGene00009554, F39B2.3, [RH, Score=223, Expect=1e-70]} {Smed: dd_Smed_v6_2717_0_1, dd_Smed_v6_2717_0_1, [RH, Score=254, Expect=5e-83]} {RNA1509_24531} {RNA1310_28792.1} {RNA815_12373.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA