M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_31294

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_31294 10 0.22 Mlig455_001125

Neo: -

Age: -

 UNC13B Mlig455_001125 {REF} {Length: 5628} {Pfam: MUN domain [PF06292.19, score=428.5]; C2 domain [PF00168.32, score=131.9]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=39.3]} {Human: ENSG00000198722, UNC13B, unc-13 homolog B, [Score=1519, Expect=0.0]; ENSG00000130477, UNC13A, unc-13 homolog A, [Score=1484, Expect=0.0]} {Mouse: ENSMUSG00000028456, Unc13b, unc-13 homolog B, [Score=1525, Expect=0.0]; ENSMUSG00000034799, Unc13a, unc-13 homolog A, [Score=1480, Expect=0.0]} {Dmel: FBgn0025726, unc-13, [Score=1568, Expect=0.0]} {Celegans: WBGene00006752, unc-13, Phorbol ester/diacylglycerol-binding protein unc-13, [Score=1419, Expect=0.0]} {Smed: dd_Smed_v6_11981_0_1, dd_Smed_v6_11981_0_1, [Score=1603, Expect=0.0]} {RNA1509_26025} {RNA1310_3088} {RNA815_2203}

Cumulative graph for MligTC455_31294

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 - - - -
RegionR2 - - - -
RegionR3 - - - -
RegionR4 - - - -
RegionR5 - - - -
RegionR6 - - - -
RegionR7 - - - -
RegionR8 - - - -

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 - - - -
RegenerationR2 - - - -
RegenerationR3 - - - -
RegenerationR4 - - - -
RegenerationR5 - - - -
RegenerationR6 - - - -
RegenerationBL - - - -
RegenerationTP - - - -


Genes with expression patterns similar to MligTC455_31294

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_31294 10 0.22 Mlig455_001125

Neo: -

Age: -

 UNC13B 1 - - - - 1.000 - Mlig455_001125 {REF} {Length: 5628} {Pfam: MUN domain [PF06292.19, score=428.5]; C2 domain [PF00168.32, score=131.9]; Phorbol esters/diacylglycerol binding domain (C1 domain) [PF00130.24, score=39.3]} {Human: ENSG00000198722, UNC13B, unc-13 homolog B, [Score=1519, Expect=0.0]; ENSG00000130477, UNC13A, unc-13 homolog A, [Score=1484, Expect=0.0]} {Mouse: ENSMUSG00000028456, Unc13b, unc-13 homolog B, [Score=1525, Expect=0.0]; ENSMUSG00000034799, Unc13a, unc-13 homolog A, [Score=1480, Expect=0.0]} {Dmel: FBgn0025726, unc-13, [Score=1568, Expect=0.0]} {Celegans: WBGene00006752, unc-13, Phorbol ester/diacylglycerol-binding protein unc-13, [Score=1419, Expect=0.0]} {Smed: dd_Smed_v6_11981_0_1, dd_Smed_v6_11981_0_1, [Score=1603, Expect=0.0]} {RNA1509_26025} {RNA1310_3088} {RNA815_2203}
2. MligTC455_00430 7 0.15 Mlig455_007037

Neo: -

Age: -

 0.994 - - - - 0.994 - Mlig455_007037 {REF} {Length: 320} {NoTransDecoderORF} {RNA1509_34772} {RNA1310_63289} {RNA815_33097}
3. MligTC455_40586 16 0.33 Mlig455_069787

Neo: -

Age: -

 0.989 - - - - 0.989 - Mlig455_069787 {REF} {Length: 931} {NoTransDecoderORF} {RNA1310_29562} {RNA815_33075}
4. MligTC455_31207 43 0.9 Mlig455_002822

Neo: -

Age: -

 0.981 - - - - 0.981 - Mlig455_002822 {REF} {Length: 1058} {Smed: dd_Smed_v6_91651_0_1, dd_Smed_v6_91651_0_1, [Score=50.4, Expect=2e-08]} {RNA1310_66267} {RNA815_45185}
5. MligTC455_51023 117 2.45 Mlig455_042608, Mlig455_042638

Neo: -

Age: -

Region-enriched R7: 5.859/0.00000

 0.979 - - - - 0.979 -

Mlig455_042608 {REF} {Length: 1963} {RNA1310_20305} {RNA815_32236}

Mlig455_042638 {REF} {Length: 1998} {RNA1310_20305} {RNA815_32236}
6. MligTC455_53154 84 1.74 Mlig455_043500

Neo: -

Age: -

 0.976 - - - - 0.976 - Mlig455_043500 {REF} {Length: 1914} {RNA1509_42280} {RNA1310_99128} {RNA815_61343}
7. MligTC455_35611 39 0.81 Mlig455_041313

Neo: -

Age: -

 0.974 - - - - 0.974 - Mlig455_041313 {REF} {Length: 518} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_49355.1} {RNA815_59105}
8. MligTC455_11572 12 0.25 Mlig455_003540

Neo: -

Age: -

 0.97 - - - - 0.970 - Mlig455_003540 {REF} {Length: 566} {Smed: dd_Smed_v6_16372_0_1, dd_Smed_v6_16372_0_1, [Score=40.8, Expect=5e-06]} {RNA1509_50632} {RNA1310_28846.1} {RNA815_50042}
9. MligTC455_23510 132 2.75 Mlig455_069637

Neo: -

Age: Up-Down-Down

Region-enriched R6: 4.253/0.00031

 ABCA12 0.969 - - - - 0.969 - Mlig455_069637 {REF} {Length: 3134} {Pfam: ABC-2 family transporter protein [PF12698.9, score=136.5]; ABC-2 type transporter [PF01061.26, score=111.4]; ABC transporter [PF00005.29, score=104.4]; AAA domain, putative AbiEii toxin, Type IV TA system [PF13304.8, score=36.9]; ABC-2 family transporter protein [PF12679.9, score=35.5]} {Human: ENSG00000144452, ABCA12, ATP binding cassette subfamily A member 12, [Score=125, Expect=5e-29]} {Mouse: ENSMUSG00000062017, Abca14, ATP-binding cassette, sub-family A (ABC1), member 14, [Score=132, Expect=2e-31]} {Dmel: FBgn0039594, CG9990, [RH, Score=567, Expect=0.0]} {Celegans: WBGene00000020, abt-2, ABC Transporter family, [Score=114, Expect=6e-26]} {Smed: dd_Smed_v6_2300_0_5, dd_Smed_v6_2300_0_5, [Score=116, Expect=1e-26]} {RNA1509_57827} {RNA1310_7775.1} {RNA815_4457}
10. MligTC455_00092 8 0.17 Mlig455_002951

Neo: -

Age: -

 0.962 - - - - 0.962 - Mlig455_002951 {REF} {Length: 188} {NoTransDecoderORF}
11. MligTC455_07051 26 0.54 Mlig455_024162, Mlig455_047642

Neo: -

Age: -

 0.958 - - - - 0.958 -

Mlig455_024162 {REF} {Length: 2495} {Pfam: SET domain [PF00856.30, score=35.1]; C2H2-type zinc-finger domain [PF13909.8, score=22.1]} {RNA1310_131883} {RNA815_45891}

Mlig455_047642 {REF} {Length: 799} {RNA1310_131883}
12. MligTC455_12862 35 0.72 Mlig455_004283

Neo: -

Age: -

 0.957 - - - - 0.957 - Mlig455_004283 {REF} {Length: 1563} {Pfam: Immunoglobulin domain [PF13927.8, score=26.8]; Immunoglobulin domain [PF13895.8, score=23.8]} {RNA1509_37987} {RNA1310_55399} {RNA815_29559}
13. MligTC455_52981 216 4.5 Mlig455_040266, Mlig455_040275

Neo: -

Age: -

 IPMK 0.957 - - - - 0.957 -

Mlig455_040266 {REF} {Length: 2596} {Pfam: Inositol polyphosphate kinase [PF03770.18, score=138.2]} {Human: ENSG00000151151, IPMK, inositol polyphosphate multikinase, [RH, Score=127, Expect=3e-32]} {Mouse: ENSMUSG00000060733, Ipmk, inositol polyphosphate multikinase, [Score=120, Expect=7e-30]} {Dmel: FBgn0031267, Ipk2, [Score=105, Expect=4e-25]} {Celegans: WBGene00009262, F30A10.3, Kinase, [RH, Score=66.2, Expect=9e-12]} {Smed: dd_Smed_v6_3701_0_1, dd_Smed_v6_3701_0_1, [Score=129, Expect=2e-34]} {RNA1509_12297} {RNA1310_12275} {RNA815_4311}

Mlig455_040275 {REF} {Length: 2517} {Pfam: Inositol polyphosphate kinase [PF03770.18, score=138.7]} {Human: ENSG00000151151, IPMK, inositol polyphosphate multikinase, [Score=119, Expect=1e-29]} {Mouse: ENSMUSG00000060733, Ipmk, inositol polyphosphate multikinase, [Score=119, Expect=3e-30]} {Dmel: FBgn0031267, Ipk2, [Score=99.8, Expect=1e-23]} {Celegans: WBGene00009262, F30A10.3, Kinase, [RH, Score=65.1, Expect=1e-11]} {Smed: dd_Smed_v6_3701_0_1, dd_Smed_v6_3701_0_1, [Score=117, Expect=1e-30]} {RNA1509_12297, RNA1509_57864} {RNA1310_13642, RNA1509_57864} {RNA1509_57864, RNA815_4311}
14. MligTC455_01167 14 0.28 Mlig455_059927

Neo: -

Age: -

 0.956 - - - - 0.956 - Mlig455_059927 {REF} {Length: 830} {NoTransDecoderORF}
15. MligTC455_01375 8 0.16 Mlig455_007546

Neo: -

Age: Down-Up-Up

 0.956 - - - - 0.956 - Mlig455_007546 {REF} {Length: 250} {TRANSSPLICED} {NoTransDecoderORF} {RNA1310_32884} {RNA815_3377}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA