M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_31356

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_31356 301 6.28 Mlig455_050963

Neo: Int S/G2/M

Age: -

 ENTPD5 Mlig455_050963 {REF} {Length: 4174} {TRANSSPLICED} {Pfam: GDA1/CD39 (nucleoside phosphatase) family [PF01150.19, score=188.6]} {Human: ENSG00000187097, ENTPD5, ectonucleoside triphosphate diphosphohydrolase 5, [Score=275, Expect=5e-88]} {Mouse: ENSMUSG00000021236, Entpd5, ectonucleoside triphosphate diphosphohydrolase 5, [Score=273, Expect=2e-87]; ENSMUSG00000033068, Entpd6, ectonucleoside triphosphate diphosphohydrolase 6, [Score=264, Expect=2e-83]} {Dmel: FBgn0024947, NTPase, [Score=231, Expect=7e-71]} {Celegans: WBGene00010697, uda-1, Nucleoside-diphosphatase uda-1, [Score=218, Expect=1e-65]} {Smed: dd_Smed_v6_8855_0_1, dd_Smed_v6_8855_0_1, [Score=260, Expect=2e-82]} {RNA1509_34067} {RNA1310_26397.1, RNA1509_34067} {RNA1509_34067, RNA815_51045}

Cumulative graph for MligTC455_31356

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 1.052 3.19 0.32767 0.97511
RegionR2 0.912 3.19 0.15614 0.49455
RegionR3 -0.39 3.19 0.39190 0.92195
RegionR4 -0.633 3.19 0.33671 0.65581
RegionR5 -0.486 3.19 0.22797 0.53358
RegionR6 -0.403 3.19 0.39446 0.96834
RegionR7 1.214 3.19 0.03056 0.33233
RegionR8 -1.267 3.19 0.20829 0.80912

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -5.399 3.19 0.29011 0.98883
RegenerationR2 0.155 3.19 0.77188 0.98086
RegenerationR3 0.527 3.19 0.37957 0.79051
RegenerationR4 -0.172 3.19 0.80119 0.98687
RegenerationR5 0.403 3.19 0.42277 0.81311
RegenerationR6 -0.124 3.19 0.86007 1.00000
RegenerationBL -1.399 3.19 0.28449 0.64588
RegenerationTP -0.675 3.19 0.50355 0.90265


Genes with expression patterns similar to MligTC455_31356

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_31356 301 6.28 Mlig455_050963

Neo: Int S/G2/M

Age: -

 ENTPD5 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_050963 {REF} {Length: 4174} {TRANSSPLICED} {Pfam: GDA1/CD39 (nucleoside phosphatase) family [PF01150.19, score=188.6]} {Human: ENSG00000187097, ENTPD5, ectonucleoside triphosphate diphosphohydrolase 5, [Score=275, Expect=5e-88]} {Mouse: ENSMUSG00000021236, Entpd5, ectonucleoside triphosphate diphosphohydrolase 5, [Score=273, Expect=2e-87]; ENSMUSG00000033068, Entpd6, ectonucleoside triphosphate diphosphohydrolase 6, [Score=264, Expect=2e-83]} {Dmel: FBgn0024947, NTPase, [Score=231, Expect=7e-71]} {Celegans: WBGene00010697, uda-1, Nucleoside-diphosphatase uda-1, [Score=218, Expect=1e-65]} {Smed: dd_Smed_v6_8855_0_1, dd_Smed_v6_8855_0_1, [Score=260, Expect=2e-82]} {RNA1509_34067} {RNA1310_26397.1, RNA1509_34067} {RNA1509_34067, RNA815_51045}
2. MligTC455_53143 370 7.71 Mlig455_026463

Neo: -

Age: Down-Up-Up, logFC(26M/2M)=0.319

 SSUH2 1.762 - - - 0.805 0.957 - Mlig455_026463 {REF} {Length: 2529} {Human: ENSG00000125046, SSUH2, ssu-2 homolog (C. elegans), [Score=213, Expect=2e-64]} {Mouse: ENSMUSG00000034387, Ssu2, ssu-2 homolog (C. elegans), [Score=182, Expect=5e-53]} {RNA1509_6425} {RNA1310_10577} {RNA815_10006}
3. MligTC455_27447 536 11.16 Mlig455_015395, Mlig455_068779

Neo: Int S/G2/M

Age: -

 RIOK1 0.981 - - - - - 0.981

Mlig455_015395 {REF} {Length: 2607} {TRANSSPLICED} {Pfam: RIO1 family [PF01163.24, score=202.7]; Phosphotransferase enzyme family [PF01636.25, score=21.6]} {Human: ENSG00000124784, RIOK1, RIO kinase 1, [RH, Score=332, Expect=5e-107]} {Mouse: ENSMUSG00000021428, Riok1, RIO kinase 1, [RH, Score=323, Expect=8e-104]} {Dmel: FBgn0036187, RIOK1, RIO kinase 1, [RH, Score=313, Expect=8e-100]} {Celegans: WBGene00019698, riok-1, Serine/threonine-protein kinase RIO1, [RH, Score=291, Expect=2e-92]} {Smed: dd_Smed_v6_6774_0_1, dd_Smed_v6_6774_0_1, [RH, Score=303, Expect=1e-97]} {RNA1509_10486, RNA1509_47572} {RNA1310_17597.1, RNA1509_47572} {RNA1509_47572, RNA815_6117}

Mlig455_068779 {REF} {Length: 2288} {TRANSSPLICED} {Pfam: RIO1 family [PF01163.24, score=201.0]; Phosphotransferase enzyme family [PF01636.25, score=21.6]} {Human: ENSG00000124784, RIOK1, RIO kinase 1, [RH, Score=334, Expect=5e-108]} {Mouse: ENSMUSG00000021428, Riok1, RIO kinase 1, [RH, Score=325, Expect=1e-104]} {Dmel: FBgn0036187, RIOK1, RIO kinase 1, [RH, Score=313, Expect=9e-100]} {Celegans: WBGene00019698, riok-1, Serine/threonine-protein kinase RIO1, [RH, Score=292, Expect=5e-93]} {Smed: dd_Smed_v6_6774_0_1, dd_Smed_v6_6774_0_1, [RH, Score=305, Expect=5e-98]} {RNA1509_10486, RNA1509_49055} {RNA1310_17597.1, RNA1509_10486, RNA1509_49055} {RNA1509_10486, RNA1509_49055, RNA815_6117}
4. MligTC455_48980 383 7.98 Mlig455_038690

Neo: -

Age: Up-Down-Up

 MIOS 0.972 - - - - - 0.972 Mlig455_038690 {REF} {Length: 2058} {Pfam: Zinc-ribbon like family [PF17034.7, score=64.3]; Zinc-ribbon, C4HC2 type [PF17120.7, score=24.3]; RING-H2 zinc finger domain [PF12678.9, score=19.9]} {Human: ENSG00000164654, MIOS, meiosis regulator for oocyte development, [Score=159, Expect=7e-44]} {Mouse: ENSMUSG00000042447, Mios, meiosis regulator for oocyte development, [Score=157, Expect=2e-43]} {Dmel: FBgn0031399, mio, missing oocyte, [RH, Score=142, Expect=4e-38]} {Celegans: WBGene00018193, F39C12.1, [RH, Score=66.2, Expect=4e-12]} {Smed: dd_Smed_v6_10107_0_1, dd_Smed_v6_10107_0_1, [RH, Score=158, Expect=6e-44]} {RNA1509_7657} {RNA1310_30853} {RNA815_5355}
5. MligTC455_52388 772 16.08 Mlig455_012400

Neo: -

Age: -

 0.968 - - - - - 0.968 Mlig455_012400 {REF} {Length: 4789} {TRANSSPLICED} {Pfam: F-box-like [PF12937.9, score=47.9]; F-box domain [PF00646.35, score=33.3]} {Dmel: FBgn0052085, CG32085, [Score=49.3, Expect=7e-06]} {RNA1509_11496} {RNA1310_13241, RNA1509_11496} {RNA1509_11496, RNA815_4939}
6. MligTC455_33937 518 10.8 Mlig455_032785, Mlig455_043676

Neo: -

Age: -

Region-enriched R5: 2.018/0.00000

 HNRNPH2 0.967 - - - - - 0.967

Mlig455_032785 {REF} {Length: 2209}

Mlig455_043676 {REF} {Length: 4064} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.24, score=83.2]; TLD [PF07534.18, score=72.4]} {Human: ENSG00000126945, HNRNPH2, heterogeneous nuclear ribonucleoprotein H2, [Score=133, Expect=2e-32]; ENSG00000284254, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [Score=130, Expect=1e-31]; ENSG00000169045, HNRNPH1, heterogeneous nuclear ribonucleoprotein H1, [Score=130, Expect=1e-33]; ENSG00000169813, HNRNPF, heterogeneous nuclear ribonucleoprotein F, [Score=129, Expect=3e-31]} {Mouse: ENSMUSG00000045427, Hnrnph2, heterogeneous nuclear ribonucleoprotein H2, [Score=133, Expect=1e-32]; ENSMUSG00000042079, Hnrnpf, heterogeneous nuclear ribonucleoprotein F, [Score=131, Expect=3e-32]; ENSMUSG00000007850, Hnrnph1, heterogeneous nuclear ribonucleoprotein H1, [Score=130, Expect=1e-31]} {Dmel: FBgn0032901, sky, skywalker, [RH, Score=122, Expect=1e-28]} {Celegans: WBGene00006367, sym-2, RNA-binding protein sym-2, [Score=114, Expect=4e-27]} {Smed: dd_Smed_v6_5542_0_1, dd_Smed_v6_5542_0_1, [RH, Score=125, Expect=5e-30]} {RNA1509_8289} {RNA1310_8633.1} {RNA815_10795}
7. MligTC455_13004 80 1.67 Mlig455_021981

Neo: -

Age: -

 0.961 - - - - - 0.961 Mlig455_021981 {REF} {Length: 315} {NoTransDecoderORF} {RNA1509_32924} {RNA1310_30689} {RNA815_2608.1}
8. MligTC455_14961 39 0.82 Mlig455_048867

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_048867 {REF} {Length: 979} {NoTransDecoderORF} {RNA1310_98124}
9. MligTC455_26353 242 5.04 Mlig455_067550

Neo: -

Age: Down-Up-Up

 0.96 - - - - 0.960 - Mlig455_067550 {REF} {Length: 1873} {RNA1509_40810} {RNA1310_31439.2} {RNA815_17565}
10. MligTC455_43229 340 7.08 Mlig455_060652

Neo: -

Age: Up-Down-Down

 NISCH 0.96 - - - - - 0.960 Mlig455_060652 {REF} {Length: 6305} {TRANSSPLICED} {Pfam: PX domain [PF00787.26, score=37.2]} {Human: ENSG00000010322, NISCH, nischarin, [Score=136, Expect=8e-33]} {Mouse: ENSMUSG00000021910, Nisch, nischarin, [Score=142, Expect=2e-36]} {Smed: dd_Smed_v6_8533_0_2, dd_Smed_v6_8533_0_2, [Score=119, Expect=5e-28]} {RNA1509_25117} {RNA1310_7689} {RNA815_3844}
11. MligTC455_33641 730 15.2 Mlig455_060638

Neo: -

Age: -

 NFAT5 0.959 - - - - - 0.959 Mlig455_060638 {REF} {Length: 5859} {TRANSSPLICED} {Pfam: Rel homology DNA-binding domain [PF00554.24, score=72.5]; Rel homology dimerisation domain [PF16179.7, score=71.3]; IPT/TIG domain [PF01833.26, score=19.2]} {Human: ENSG00000102908, NFAT5, nuclear factor of activated T cells 5, [RH, Score=311, Expect=1e-88]} {Mouse: ENSMUSG00000003847, Nfat5, nuclear factor of activated T cells 5, [RH, Score=312, Expect=4e-89]} {Dmel: FBgn0030505, NFAT, NFAT nuclear factor, [RH, Score=271, Expect=2e-75]} {Smed: dd_Smed_v6_5978_0_1, dd_Smed_v6_5978_0_1, [RH, Score=350, Expect=2e-106]} {RNA1509_3637} {RNA1310_4624} {RNA815_17841}
12. MligTC455_26352 227 4.72 Mlig455_051215

Neo: -

Age: -

 0.958 - - - - 0.958 - Mlig455_051215 {REF} {Length: 1112} {RNA1509_40810} {RNA1310_37375} {RNA815_16686.1}
13. MligTC455_52389 545 11.36 Mlig455_012827

Neo: -

Age: -

 0.958 - - - - - 0.958 Mlig455_012827 {REF} {Length: 1894} {NoTransDecoderORF} {RNA1509_39500} {RNA1310_34800, RNA1509_39500} {RNA1509_39500, RNA815_18137.1}
14. MligTC455_25439 669 13.95 Mlig455_006324

Neo: Irradiation

Age: -

Region-specific R5: 2.180

Region-enriched R5: 1.387/0.00026

 PWP2 0.957 - - - - - 0.957 Mlig455_006324 {REF} {Length: 3362} {TRANSSPLICED} {Pfam: WD domain, G-beta repeat [PF00400.34, score=136.5]; Anaphase-promoting complex subunit 4 WD40 domain [PF12894.9, score=84.8]; Dip2/Utp12 Family [PF04003.14, score=38.1]; WD40 region of Ge1, enhancer of mRNA-decapping protein [PF16529.7, score=23.6]; Eukaryotic translation initiation factor eIF2A [PF08662.13, score=21.4]} {Human: ENSG00000241945, PWP2, PWP2, small subunit processome component, [RH, Score=516, Expect=2e-168]; ENSG00000275464, FP565260.1, periodic tryptophan protein 2 homolog, [RH, Score=514, Expect=8e-168]} {Mouse: ENSMUSG00000032834, Pwp2, PWP2 periodic tryptophan protein homolog (yeast), [RH, Score=500, Expect=1e-162]} {Dmel: FBgn0033557, CG12325, [RH, Score=518, Expect=3e-169]} {Celegans: WBGene00018891, F55F8.3, Periodic tryptophan protein 2 homolog, [RH, Score=404, Expect=4e-126]} {Smed: dd_Smed_v6_6675_0_1, dd_Smed_v6_6675_0_1, [RH, Score=431, Expect=4e-137]} {RNA1509_25628, RNA1509_5746} {RNA1310_3870, RNA1509_25628, RNA1509_5746} {RNA1509_25628, RNA1509_5746, RNA815_1579}
15. MligTC455_44686 470 9.78 Mlig455_036868, Mlig455_053067

Neo: -

Age: -

 LACTB 0.953 - - - - - 0.953

Mlig455_036868 {REF} {Length: 1925} {TRANSSPLICED} {Pfam: Beta-lactamase [PF00144.26, score=163.2]} {Human: ENSG00000103642, LACTB, lactamase beta, [RH, Score=207, Expect=1e-60]} {Mouse: ENSMUSG00000032370, Lactb, lactamase, beta, [Score=149, Expect=3e-39]} {Celegans: WBGene00012890, lact-9, Beta-LACTamase domain containing, [RH, Score=190, Expect=4e-56]} {Smed: dd_Smed_v6_7272_0_1, dd_Smed_v6_7272_0_1, [RH, Score=202, Expect=9e-61]} {RNA1509_35925, RNA1509_9707} {RNA1310_16144, RNA1509_35925, RNA1509_9707} {RNA1509_35925, RNA1509_9707, RNA815_5238.1}

Mlig455_053067 {REF} {Length: 1933} {TRANSSPLICED} {Pfam: Beta-lactamase [PF00144.26, score=162.9]} {Human: ENSG00000103642, LACTB, lactamase beta, [RH, Score=207, Expect=1e-60]} {Mouse: ENSMUSG00000032370, Lactb, lactamase, beta, [RH, Score=147, Expect=1e-38]} {Celegans: WBGene00012890, lact-9, Beta-LACTamase domain containing, [RH, Score=191, Expect=3e-56]} {Smed: dd_Smed_v6_7272_0_1, dd_Smed_v6_7272_0_1, [RH, Score=204, Expect=2e-61]} {RNA1509_9707} {RNA1310_16144} {RNA815_5238.1}
16. MligTC455_30116 31 0.64 Mlig455_036790, Mlig455_036796

Neo: -

Age: -

 0.952 - - - - 0.952 -

Mlig455_036790 {REF} {Length: 276} {NoTransDecoderORF} {RNA1509_14197} {RNA1310_72465} {RNA815_3035.2}

Mlig455_036796 {REF} {Length: 276} {NoTransDecoderORF} {RNA1509_14197} {RNA1310_72465} {RNA815_3035.2}
17. MligTC455_54142 303 6.31 Mlig455_007899, Mlig455_008005

Neo: -

Age: -

 0.952 - - - - - 0.952

Mlig455_007899 {REF} {Length: 3006} {TRANSSPLICED} {Pfam: MYND finger [PF01753.20, score=35.0]} {Smed: dd_Smed_v6_7309_0_3, dd_Smed_v6_7309_0_3, [Score=46.2, Expect=6e-06]} {RNA1509_25419, RNA1509_48076} {RNA1310_25377.2, RNA1509_25419} {RNA1509_25419, RNA815_35961}

Mlig455_008005 {REF} {Length: 1544} {TRANSSPLICED} {Pfam: MYND finger [PF01753.20, score=35.0]} {Smed: dd_Smed_v6_7309_0_3, dd_Smed_v6_7309_0_3, [Score=46.2, Expect=7e-06]} {RNA1509_48076} {RNA1310_25377.2, RNA1509_48076} {RNA1509_48076, RNA815_35961}
18. MligTC455_46815 1020 21.26 Mlig455_004988

Neo: -

Age: -

 GMPR2 0.951 - - - - - 0.951 Mlig455_004988 {REF} {Length: 1611} {TRANSSPLICED} {Pfam: IMP dehydrogenase / GMP reductase domain [PF00478.27, score=266.3]; FMN-dependent dehydrogenase [PF01070.20, score=21.1]} {Human: ENSG00000284752, GMPR2, guanosine monophosphate reductase 2, [RH, Score=550, Expect=0.0]; ENSG00000100938, GMPR2, guanosine monophosphate reductase 2, [RH, Score=550, Expect=0.0]; ENSG00000137198, GMPR, guanosine monophosphate reductase, [RH, Score=543, Expect=0.0]} {Mouse: ENSMUSG00000000253, Gmpr, guanosine monophosphate reductase, [RH, Score=547, Expect=0.0]; ENSMUSG00000002326, Gmpr2, guanosine monophosphate reductase 2, [RH, Score=540, Expect=0.0]} {Celegans: WBGene00017984, F32D1.5, GMP reductase, [RH, Score=527, Expect=0.0]} {RNA1509_10343, RNA1509_25287, RNA1509_38528} {RNA1310_11305.1, RNA1509_10343, RNA1509_25287, RNA1509_38528} {RNA1509_10343, RNA1509_25287, RNA1509_38528, RNA815_7734}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA