TomoSeq data search

Data search

Results for MligTC455_31510

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_31510

978

20.37

Mlig455_050155

Neo: -

Age: Up-Down-Up, logFC(26M/2M)=1.020

LAMB4

Mlig455_050155 {REF} {Length: 22508} {TRANSSPLICED} {Pfam: Autophagy protein 16 (ATG16) [PF08614.13, score=30.3]; Crescentin protein [PF19220.2, score=28.5]; HOOK protein coiled-coil region [PF05622.14, score=20.2]; Mitotic checkpoint protein [PF05557.15, score=18.2]} {Human: ENSG00000091128, LAMB4, laminin subunit beta 4, [Score=63.2, Expect=3e-08]} {Mouse: ENSMUSG00000025272, Tro, trophinin, [Score=55.1, Expect=4e-06]} {Smed: dd_Smed_v6_9784_0_3, dd_Smed_v6_9784_0_3, [Score=86.7, Expect=6e-16]} {RNA1509_13842} {RNA1310_120.1} {RNA815_543.1}

Cumulative graph for MligTC455_31510

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	0.176	4.509	0.83837	1.00000
RegionR2	0.537	4.509	0.16325	0.50600
RegionR3	0.009	4.509	0.97648	1.00000
RegionR4	-0.083	4.509	0.81964	1.00000
RegionR5	0.356	4.509	0.20435	0.49695
RegionR6	0.182	4.509	0.58027	1.00000
RegionR7	-0.736	4.509	0.14556	0.70959
RegionR8	-0.44	4.509	0.46881	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	-1.786	4.509	0.23427	0.96381
RegenerationR2	0.474	4.509	0.11160	0.52201
RegenerationR3	0.55	4.509	0.11920	0.53698
RegenerationR4	0.14	4.509	0.69448	0.95152
RegenerationR5	0.013	4.509	0.96759	1.00000
RegenerationR6	0.466	4.509	0.18509	0.52093
RegenerationBL	0.808	4.509	0.06339	0.29251
RegenerationTP	1.325	4.509	0.00643	0.13506

Genes with expression patterns similar to MligTC455_31510

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_31510	978	20.37	Mlig455_050155	Neo: - Age: Up-Down-Up, logFC(26M/2M)=1.020	LAMB4	6	1.000	1.000	1.000	1.000	1.000	1.000	Mlig455_050155 {REF} {Length: 22508} {TRANSSPLICED} {Pfam: Autophagy protein 16 (ATG16) [PF08614.13, score=30.3]; Crescentin protein [PF19220.2, score=28.5]; HOOK protein coiled-coil region [PF05622.14, score=20.2]; Mitotic checkpoint protein [PF05557.15, score=18.2]} {Human: ENSG00000091128, LAMB4, laminin subunit beta 4, [Score=63.2, Expect=3e-08]} {Mouse: ENSMUSG00000025272, Tro, trophinin, [Score=55.1, Expect=4e-06]} {Smed: dd_Smed_v6_9784_0_3, dd_Smed_v6_9784_0_3, [Score=86.7, Expect=6e-16]} {RNA1509_13842} {RNA1310_120.1} {RNA815_543.1}
2.	MligTC455_34705	812	16.91	Mlig455_059168	Neo: - Age: -	AGO2	1.762	-	0.798	-	-	0.964	-	Mlig455_059168 {REF} {Length: 7867} {Pfam: Piwi domain [PF02171.19, score=363.8]; Mid domain of argonaute [PF16487.7, score=113.6]; N-terminal domain of argonaute [PF16486.7, score=92.1]; PAZ domain [PF02170.24, score=81.0]; Argonaute linker 1 domain [PF08699.12, score=78.2]; Argonaute linker 2 domain [PF16488.7, score=52.0]} {Human: ENSG00000123908, AGO2, argonaute 2, RISC catalytic component, [RH, Score=1248, Expect=0.0]; ENSG00000092847, AGO1, argonaute 1, RISC catalytic component, [RH, Score=1230, Expect=0.0]; ENSG00000126070, AGO3, argonaute 3, RISC catalytic component, [RH, Score=1220, Expect=0.0]; ENSG00000134698, AGO4, argonaute 4, RISC catalytic component, [RH, Score=1201, Expect=0.0]} {Mouse: ENSMUSG00000036698, Ago2, argonaute RISC catalytic subunit 2, [RH, Score=1251, Expect=0.0]; ENSMUSG00000041530, Ago1, argonaute RISC catalytic subunit 1, [RH, Score=1230, Expect=0.0]; ENSMUSG00000028842, Ago3, argonaute RISC catalytic subunit 3, [RH, Score=1218, Expect=0.0]; ENSMUSG00000042500, Ago4, argonaute RISC catalytic subunit 4, [RH, Score=1200, Expect=0.0]} {Dmel: FBgn0262739, AGO1, Argonaute-1, [RH, Score=1323, Expect=0.0]} {Celegans: WBGene00000105, alg-1, Argonaute-like, [RH, Score=1245, Expect=0.0]} {Smed: dd_Smed_v6_3861_0_1, dd_Smed_v6_3861_0_1, [RH, Score=1427, Expect=0.0]} {RNA1509_34423} {RNA1310_7009} {RNA815_1509.1}
3.	MligTC455_35957	838	17.46	Mlig455_026548	Neo: - Age: -	RAB32	1.76	-	-	0.805	-	-	0.955	Mlig455_026548 {REF} {Length: 4076} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=149.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=101.3]; ADP-ribosylation factor family [PF00025.23, score=56.2]; Gtr1/RagA G protein conserved region [PF04670.14, score=26.3]; 50S ribosome-binding GTPase [PF01926.25, score=26.0]; Signal recognition particle receptor beta subunit [PF09439.12, score=25.1]; Elongation factor Tu GTP binding domain [PF00009.29, score=23.7]; Conserved hypothetical ATP binding protein [PF03029.19, score=23.7]; RsgA GTPase [PF03193.18, score=20.5]; Ethanolamine utilisation - propanediol utilisation [PF10662.11, score=18.5]} {Human: ENSG00000118508, RAB32, RAB32, member RAS oncogene family, [Score=184, Expect=4e-58]; ENSG00000123892, RAB38, RAB38, member RAS oncogene family, [Score=179, Expect=2e-56]} {Mouse: ENSMUSG00000019832, Rab32, RAB32, member RAS oncogene family, [Score=186, Expect=1e-58]; ENSMUSG00000030559, Rab38, RAB38, member RAS oncogene family, [Score=180, Expect=1e-56]} {Dmel: FBgn0002567, Rab32, [Score=193, Expect=4e-62]} {Celegans: WBGene00011083, glo-1, Gut granule LOss; Rab GTPase GLO-1, [Score=161, Expect=1e-49]} {Smed: dd_Smed_v6_1037_0_1, dd_Smed_v6_1037_0_1, [Score=163, Expect=1e-50]} {RNA1509_49076} {RNA1310_25952} {RNA815_23958.2}
4.	MligTC455_53627	1053	21.95	Mlig455_033978, Mlig455_056722	Neo: - Age: -	SLIT1	0.961	-	-	-	0.961	-	-	Mlig455_033978 {REF} {Length: 2051} {Pfam: Leucine rich repeat [PF13855.8, score=61.1]} {Human: ENSG00000187122, SLIT1, slit guidance ligand 1, [Score=50.1, Expect=7e-06]} {Mouse: ENSMUSG00000025020, Slit1, slit guidance ligand 1, [Score=50.8, Expect=3e-06]} {Dmel: FBgn0264089, sli, slit, [Score=52.8, Expect=5e-07]} {RNA1509_49012} {RNA1310_15910.1} {RNA815_6013} Mlig455_056722 {REF} {Length: 1986} {Pfam: Leucine rich repeat [PF13855.8, score=60.1]} {Human: ENSG00000187122, SLIT1, slit guidance ligand 1, [Score=50.4, Expect=6e-06]} {Mouse: ENSMUSG00000025020, Slit1, slit guidance ligand 1, [Score=50.8, Expect=3e-06]} {Dmel: FBgn0264089, sli, slit, [Score=53.1, Expect=4e-07]} {RNA1509_49012} {RNA1310_15910.1} {RNA815_6013}
5.	MligTC455_35958	770	16.04	Mlig455_026638	Neo: - Age: Up-Down-Up	RAB32	0.956	-	-	-	-	-	0.956	Mlig455_026638 {REF} {Length: 3064} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=147.9]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=102.9]; ADP-ribosylation factor family [PF00025.23, score=55.1]; 50S ribosome-binding GTPase [PF01926.25, score=24.9]; Gtr1/RagA G protein conserved region [PF04670.14, score=24.4]; Signal recognition particle receptor beta subunit [PF09439.12, score=24.3]; Elongation factor Tu GTP binding domain [PF00009.29, score=23.2]; Conserved hypothetical ATP binding protein [PF03029.19, score=23.1]; RsgA GTPase [PF03193.18, score=19.0]} {Human: ENSG00000118508, RAB32, RAB32, member RAS oncogene family, [Score=184, Expect=8e-58]; ENSG00000123892, RAB38, RAB38, member RAS oncogene family, [Score=177, Expect=1e-55]} {Mouse: ENSMUSG00000019832, Rab32, RAB32, member RAS oncogene family, [Score=182, Expect=2e-57]; ENSMUSG00000030559, Rab38, RAB38, member RAS oncogene family, [Score=177, Expect=8e-56]} {Dmel: FBgn0002567, Rab32, [Score=190, Expect=6e-61]} {Celegans: WBGene00011083, glo-1, Gut granule LOss; Rab GTPase GLO-1, [Score=159, Expect=1e-48]} {Smed: dd_Smed_v6_1037_0_1, dd_Smed_v6_1037_0_1, [Score=161, Expect=9e-50]} {RNA1509_49076} {RNA1310_25952} {RNA815_23958.2}
6.	MligTC455_17648	1703	35.48	Mlig455_047653	Neo: - Age: -	PPP3CA	0.955	-	-	-	-	-	0.955	Mlig455_047653 {REF} {Length: 4216} {Pfam: Calcineurin-like phosphoesterase [PF00149.30, score=129.1]} {Human: ENSG00000138814, PPP3CA, protein phosphatase 3 catalytic subunit alpha, [RH, Score=824, Expect=0.0]; ENSG00000107758, PPP3CB, protein phosphatase 3 catalytic subunit beta, [RH, Score=810, Expect=0.0]; ENSG00000120910, PPP3CC, protein phosphatase 3 catalytic subunit gamma, [RH, Score=803, Expect=0.0]} {Mouse: ENSMUSG00000028161, Ppp3ca, protein phosphatase 3, catalytic subunit, alpha isoform, [RH, Score=823, Expect=0.0]; ENSMUSG00000021816, Ppp3cb, protein phosphatase 3, catalytic subunit, beta isoform, [RH, Score=810, Expect=0.0]; ENSMUSG00000022092, Ppp3cc, protein phosphatase 3, catalytic subunit, gamma isoform, [RH, Score=790, Expect=0.0]} {Dmel: FBgn0011826, Pp2B-14D, Protein phosphatase 2B at 14D, [RH, Score=820, Expect=0.0]} {Celegans: WBGene00006527, tax-6, Serine/threonine-protein phosphatase 2B catalytic subunit, [RH, Score=758, Expect=0.0]} {Smed: dd_Smed_v6_2045_0_1, dd_Smed_v6_2045_0_1, [RH, Score=670, Expect=0.0]} {RNA1509_3236} {RNA1310_3919.1} {RNA815_3119.1}

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