M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_31884

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_31884 21 0.45 Mlig455_070720

Neo: -

Age: -

 Mlig455_070720 {REF} {Length: 2925} {Pfam: WSC domain [PF01822.21, score=55.9]} {RNA1509_22651} {RNA1310_622.1} {RNA815_2514.1}

Cumulative graph for MligTC455_31884

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.701 0.686 1.00000 1.00000
RegionR2 2.331 0.686 0.99992 1.00000
RegionR3 -0.019 0.686 0.99995 1.00000
RegionR4 -2.656 0.686 0.99979 1.00000
RegionR5 -1.188 0.686 0.99989 1.00000
RegionR6 -0.472 0.686 0.99994 1.00000
RegionR7 1.327 0.686 0.99997 1.00000
RegionR8 2.378 0.686 1.00000 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.52 0.686 0.99998 1.00000
RegenerationR2 1.954 0.686 0.99962 1.00000
RegenerationR3 1.43 0.686 1.00000 1.00000
RegenerationR4 1.574 0.686 1.00000 1.00000
RegenerationR5 0.724 0.686 0.99962 1.00000
RegenerationR6 2.608 0.686 1.00000 1.00000
RegenerationBL 1.21 0.686 0.99982 1.00000
RegenerationTP -1.581 0.686 0.99993 1.00000


Genes with expression patterns similar to MligTC455_31884

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_31884 21 0.45 Mlig455_070720

Neo: -

Age: -

 1 - - - - 1.000 - Mlig455_070720 {REF} {Length: 2925} {Pfam: WSC domain [PF01822.21, score=55.9]} {RNA1509_22651} {RNA1310_622.1} {RNA815_2514.1}
2. MligTC455_41772 160 3.34 Mlig455_033633

Neo: -

Age: Down-Up-Down

 RAB10 0.985 - - - - 0.985 - Mlig455_033633 {REF} {Length: 1668} {TRANSSPLICED} {Pfam: Ras family [PF00071.24, score=216.2]; Ras of Complex, Roc, domain of DAPkinase [PF08477.15, score=120.4]; ADP-ribosylation factor family [PF00025.23, score=63.2]; Elongation factor Tu GTP binding domain [PF00009.29, score=29.4]; Gtr1/RagA G protein conserved region [PF04670.14, score=27.8]; RsgA GTPase [PF03193.18, score=23.0]; 50S ribosome-binding GTPase [PF01926.25, score=18.9]} {Human: ENSG00000084733, RAB10, RAB10, member RAS oncogene family, [Score=259, Expect=2e-88]} {Mouse: ENSMUSG00000020671, Rab10, RAB10, member RAS oncogene family, [Score=259, Expect=1e-88]} {Dmel: FBgn0015789, Rab10, [Score=246, Expect=2e-83]} {Celegans: WBGene00004273, rab-10, Ras-related protein Rab-10, [Score=244, Expect=1e-82]} {Smed: dd_Smed_v6_3485_0_1, dd_Smed_v6_3485_0_1, [Score=224, Expect=1e-74]} {RNA1509_24596, RNA1509_59464} {RNA1310_45042, RNA1509_24596, RNA1509_59464} {RNA1509_24596, RNA1509_59464, RNA815_22097}
3. MligTC455_37342 203 4.23 Mlig455_024018

Neo: -

Age: -

 0.969 - - - - 0.969 - Mlig455_024018 {REF} {Length: 1374} {RNA1509_59718} {RNA1310_33285} {RNA815_22262}
4. MligTC455_53387 188 3.91 Mlig455_025116

Neo: -

Age: -

 0.967 - - - - 0.967 - Mlig455_025116 {REF} {Length: 2443} {TRANSSPLICED} {Pfam: Glutathione S-transferase, C-terminal domain [PF13410.8, score=21.7]} {RNA1509_15321, RNA1509_30948, RNA1509_38855} {RNA1310_18756.1, RNA1509_15321, RNA1509_30948, RNA1509_38855} {RNA1509_15321, RNA1509_30948, RNA1509_38855, RNA815_4170.1}
5. MligTC455_28073 46 0.96 Mlig455_015569

Neo: -

Age: -

 0.966 - - - - 0.966 - Mlig455_015569 {REF} {Length: 1631} {NoTransDecoderORF} {RNA1509_27021} {RNA1310_14467} {RNA815_5428.1}
6. MligTC455_28118 288 6 Mlig455_008204

Neo: -

Age: logFC(26M/2M)=-0.273

 0.963 - - - - 0.963 - Mlig455_008204 {REF} {Length: 3544} {TRANSSPLICED} {RNA1509_24934, RNA1509_40010, RNA1509_55432} {RNA1310_8589.1, RNA1509_40010, RNA1509_55432} {RNA1509_40010, RNA1509_55432, RNA815_7686}
7. MligTC455_40993 817 17.03 Mlig455_037436, Mlig455_037459

Neo: -

Age: Down-Up-Up

Region-specific R2: 3.184

Region-enriched R2: 1.942/0.00090

 GNG3, GNG7 0.96 - - - - 0.960 -

Mlig455_037436 {REF} {Length: 861} {Pfam: GGL domain [PF00631.24, score=53.3]} {Human: ENSG00000176533, GNG7, G protein subunit gamma 7, [Score=48.5, Expect=2e-08]; ENSG00000172380, GNG12, G protein subunit gamma 12, [Score=47.0, Expect=1e-07]} {Mouse: ENSMUSG00000071658, Gng3, guanine nucleotide binding protein (G protein), gamma 3, [RH, Score=45.8, Expect=2e-07]} {Dmel: FBgn0263029, CG43324, [RH, Score=61.6, Expect=7e-14]} {Celegans: WBGene00001681, gpc-1, Guanine nucleotide-binding protein subunit gamma, [RH, Score=55.1, Expect=2e-11]} {Smed: dd_Smed_v6_1237_0_1, dd_Smed_v6_1237_0_1, [RH, Score=109, Expect=5e-33]} {RNA1509_46825} {RNA1310_42481} {RNA815_22956}

Mlig455_037459 {REF} {Length: 817} {Pfam: GGL domain [PF00631.24, score=53.6]} {Human: ENSG00000162188, GNG3, G protein subunit gamma 3, [RH, Score=46.2, Expect=1e-07]} {Mouse: ENSMUSG00000071658, Gng3, guanine nucleotide binding protein (G protein), gamma 3, [RH, Score=46.2, Expect=9e-08]} {Dmel: FBgn0263029, CG43324, [RH, Score=60.8, Expect=1e-13]} {Celegans: WBGene00001681, gpc-1, Guanine nucleotide-binding protein subunit gamma, [RH, Score=55.1, Expect=1e-11]} {Smed: dd_Smed_v6_1237_0_1, dd_Smed_v6_1237_0_1, [RH, Score=107, Expect=3e-32]} {RNA1509_46825} {RNA1310_42481} {RNA815_22956}
8. MligTC455_32317 1546 32.21 Mlig455_039677

Neo: -

Age: logFC(26M/2M)=-0.274

 BEST4 0.958 - - - - 0.958 - Mlig455_039677 {REF} {Length: 3379} {Pfam: Bestrophin, RFP-TM, chloride channel [PF01062.23, score=182.9]} {Human: ENSG00000142959, BEST4, bestrophin 4, [Score=205, Expect=9e-60]} {Mouse: ENSMUSG00000020169, Best3, bestrophin 3, [Score=193, Expect=8e-54]; ENSMUSG00000052819, Best2, bestrophin 2, [Score=191, Expect=3e-54]} {Dmel: FBgn0040238, Best1, Bestrophin 1, [Score=227, Expect=3e-66]} {Celegans: WBGene00015288, best-4, Bestrophin homolog, [Score=180, Expect=5e-50]} {Smed: dd_Smed_v6_8073_0_1, dd_Smed_v6_8073_0_1, [Score=359, Expect=7e-120]} {RNA1509_15539, RNA1509_25951, RNA1509_8648} {RNA1310_8340, RNA1509_15539, RNA1509_25951, RNA1509_8648} {RNA1509_15539, RNA1509_25951, RNA1509_8648, RNA815_2922.1}
9. MligTC455_16233 307 6.4 Mlig455_011368

Neo: -

Age: logFC(26M/2M)=-1.958

 0.957 - - - - 0.957 - Mlig455_011368 {REF} {Length: 1236} {RNA1509_44264} {RNA1310_62516} {RNA815_23574}
10. MligTC455_43285 112 2.34 Mlig455_006643

Neo: -

Age: -

 ARMC3 0.956 - - - - 0.956 - Mlig455_006643 {REF} {Length: 3011} {TRANSSPLICED} {Pfam: Armadillo/beta-catenin-like repeat [PF00514.25, score=100.6]; Ethylene-responsive protein kinase Le-CTR1 [PF14381.8, score=95.9]; HEAT repeats [PF13646.8, score=72.3]; HEAT repeat [PF02985.24, score=52.3]; non-SMC mitotic condensation complex subunit 1 [PF12717.9, score=40.1]; HEAT-like repeat [PF13513.8, score=40.0]; V-ATPase subunit H [PF11698.10, score=39.8]; Armadillo-like [PF04826.15, score=29.7]; Interferon-related developmental regulator (IFRD) [PF05004.15, score=18.7]} {Human: ENSG00000165309, ARMC3, armadillo repeat containing 3, [RH, Score=533, Expect=3e-176]} {Mouse: ENSMUSG00000037683, Armc3, armadillo repeat containing 3, [RH, Score=504, Expect=2e-165]} {Dmel: FBgn0033794, CG13326, [Score=57.4, Expect=6e-08]} {Smed: dd_Smed_v6_9679_0_1, dd_Smed_v6_9679_0_1, [RH, Score=752, Expect=0.0]} {RNA1509_14962, RNA1509_42538, RNA1509_58062} {RNA1310_4998.1, RNA1509_14962, RNA1509_42538} {RNA1509_14962, RNA1509_42538, RNA815_8459}
11. MligTC455_49663 245 5.1 Mlig455_013565

Neo: -

Age: -

 CDH23 0.955 - - - - 0.955 - Mlig455_013565 {REF} {Length: 7289} {Pfam: Cadherin domain [PF00028.19, score=361.2]; Cadherin-like [PF08266.14, score=38.9]} {Human: ENSG00000107736, CDH23, cadherin related 23, [Score=372, Expect=1e-103]} {Mouse: ENSMUSG00000012819, Cdh23, cadherin 23 (otocadherin), [Score=375, Expect=6e-105]} {Dmel: FBgn0038247, Cad88C, Cadherin 88C, [Score=362, Expect=2e-101]} {Celegans: WBGene00001475, fmi-1, FlaMIngo (Cadherin plus 7TM domain) homolog; Flamingo-like protein FMI-1, [Score=224, Expect=2e-58]} {Smed: dd_Smed_v6_15356_0_1, dd_Smed_v6_15356_0_1, [Score=414, Expect=3e-118]} {RNA1509_16482} {RNA1310_682} {RNA815_249}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA