M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32240

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32240 735 15.32 Mlig455_042457

Neo: -

Age: -

 RMND5A Mlig455_042457 {REF} {Length: 1935} {Pfam: CTLH/CRA C-terminal to LisH motif domain [PF10607.11, score=72.1]; RING-type zinc-finger [PF13445.8, score=19.6]} {Human: ENSG00000153561, RMND5A, required for meiotic nuclear division 5 homolog A, [RH, Score=271, Expect=2e-87]} {Mouse: ENSMUSG00000002222, Rmnd5a, required for meiotic nuclear division 5 homolog A, [RH, Score=271, Expect=2e-87]} {Dmel: FBgn0034573, CG3295, [RH, Score=233, Expect=2e-72]} {Celegans: WBGene00020301, T07D1.2, [RH, Score=95.9, Expect=1e-21]} {Smed: dd_Smed_v6_4973_0_1, dd_Smed_v6_4973_0_1, [RH, Score=124, Expect=2e-31]} {RNA1509_31357, RNA1509_6067} {RNA1310_12630, RNA1509_31357} {RNA1509_31357, RNA815_5135}

Cumulative graph for MligTC455_32240

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.281 4.184 0.27098 0.92157
RegionR2 0.012 4.184 0.97992 1.00000
RegionR3 0.134 4.184 0.74226 1.00000
RegionR4 -0.083 4.184 0.86464 1.00000
RegionR5 0.181 4.184 0.63335 0.98628
RegionR6 0.052 4.184 0.90139 1.00000
RegionR7 -0.039 4.184 0.94223 1.00000
RegionR8 1.024 4.184 0.06936 0.50516

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 0.361 4.184 0.81762 1.00000
RegenerationR2 -0.347 4.184 0.42978 0.83400
RegenerationR3 -0.995 4.184 0.04077 0.35439
RegenerationR4 -0.497 4.184 0.30673 0.74829
RegenerationR5 -0.695 4.184 0.12387 0.52636
RegenerationR6 -0.069 4.184 0.88399 1.00000
RegenerationBL -0.243 4.184 0.63606 0.97558
RegenerationTP -0.49 4.184 0.37160 0.80929


Genes with expression patterns similar to MligTC455_32240

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32240 735 15.32 Mlig455_042457

Neo: -

Age: -

 RMND5A 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_042457 {REF} {Length: 1935} {Pfam: CTLH/CRA C-terminal to LisH motif domain [PF10607.11, score=72.1]; RING-type zinc-finger [PF13445.8, score=19.6]} {Human: ENSG00000153561, RMND5A, required for meiotic nuclear division 5 homolog A, [RH, Score=271, Expect=2e-87]} {Mouse: ENSMUSG00000002222, Rmnd5a, required for meiotic nuclear division 5 homolog A, [RH, Score=271, Expect=2e-87]} {Dmel: FBgn0034573, CG3295, [RH, Score=233, Expect=2e-72]} {Celegans: WBGene00020301, T07D1.2, [RH, Score=95.9, Expect=1e-21]} {Smed: dd_Smed_v6_4973_0_1, dd_Smed_v6_4973_0_1, [RH, Score=124, Expect=2e-31]} {RNA1509_31357, RNA1509_6067} {RNA1310_12630, RNA1509_31357} {RNA1509_31357, RNA815_5135}
2. MligTC455_49868 293 6.1 Mlig455_050035

Neo: Int S/G2/M

Age: Down-Up-Down

Region-enriched R4: 2.217/0.02909

 CSNK1A1L 1.693 - - - 0.969 - 0.724 Mlig455_050035 {REF} {Length: 2314} {Human: ENSG00000180138, CSNK1A1L, casein kinase 1 alpha 1 like, [Score=93.6, Expect=4e-24]; ENSG00000113712, CSNK1A1, casein kinase 1 alpha 1, [Score=93.6, Expect=2e-25]} {Mouse: ENSMUSG00000024576, Csnk1a1, casein kinase 1, alpha 1, [Score=94.0, Expect=2e-24]} {Dmel: FBgn0015024, CkIalpha, Casein kinase Ialpha, [Score=87.4, Expect=4e-22]} {Celegans: WBGene00002202, kin-19, Casein kinase I isoform alpha, [Score=80.5, Expect=9e-20]} {Smed: dd_Smed_v6_1989_0_1, dd_Smed_v6_1989_0_1, [Score=84.0, Expect=5e-21]} {RNA1509_1920} {RNA1310_7964} {RNA815_14055}
3. MligTC455_19637 2110 43.95 Mlig455_015648

Neo: -

Age: -

 1.688 0.737 - - 0.951 - - Mlig455_015648 {REF} {Length: 4085} {TRANSSPLICED} {Pfam: HMG (high mobility group) box [PF00505.21, score=39.2]; HMG-box domain [PF09011.12, score=32.4]} {Smed: dd_Smed_v6_10010_0_1, dd_Smed_v6_10010_0_1, [Score=47.8, Expect=9e-06]} {RNA1509_3630} {RNA1310_12490} {RNA815_3935}
4. MligTC455_24939 1310 27.3 Mlig455_026523, Mlig455_026622

Neo: -

Age: -

 PPP2R3A 1.675 - - - 0.958 - 0.717

Mlig455_026523 {REF} {Length: 3635} {Pfam: EF-hand domain [PF17958.3, score=117.2]; EF-hand domain pair [PF13499.8, score=73.9]; EF hand [PF13202.8, score=24.3]; EF hand [PF00036.34, score=22.3]; EF-hand domain [PF13405.8, score=19.9]} {Human: ENSG00000073711, PPP2R3A, protein phosphatase 2 regulatory subunit B''alpha, [RH, Score=479, Expect=3e-151]; ENSG00000167393, PPP2R3B, protein phosphatase 2 regulatory subunit B''beta, [RH, Score=471, Expect=5e-155]; ENSG00000273850, PPP2R3B, protein phosphatase 2 regulatory subunit B''beta, [RH, Score=471, Expect=6e-155]; ENSG00000276438, PPP2R3B, protein phosphatase 2 regulatory subunit B''beta, [RH, Score=465, Expect=9e-153]} {Mouse: ENSMUSG00000043154, Ppp2r3a, protein phosphatase 2, regulatory subunit B'', alpha, [RH, Score=473, Expect=2e-149]} {Dmel: FBgn0038744, CG4733, [RH, Score=456, Expect=2e-145]} {Celegans: WBGene00018373, F43B10.1, [RH, Score=318, Expect=1e-91]} {Smed: dd_Smed_v6_14696_0_1, dd_Smed_v6_14696_0_1, [RH, Score=453, Expect=1e-147]} {RNA1509_6083} {RNA1310_2997} {RNA815_2584.1}

Mlig455_026622 {REF} {Length: 5428} {Pfam: EF-hand domain [PF17958.3, score=116.8]; EF-hand domain pair [PF13499.8, score=24.3]} {Human: ENSG00000073711, PPP2R3A, protein phosphatase 2 regulatory subunit B''alpha, [Score=243, Expect=3e-67]; ENSG00000273850, PPP2R3B, protein phosphatase 2 regulatory subunit B''beta, [Score=234, Expect=3e-67]; ENSG00000167393, PPP2R3B, protein phosphatase 2 regulatory subunit B''beta, [Score=234, Expect=2e-67]} {Mouse: ENSMUSG00000043154, Ppp2r3a, protein phosphatase 2, regulatory subunit B'', alpha, [Score=238, Expect=1e-65]} {Dmel: FBgn0038744, CG4733, [Score=224, Expect=6e-62]} {Celegans: WBGene00018373, F43B10.1, [Score=184, Expect=7e-50]} {Smed: dd_Smed_v6_11652_0_1, dd_Smed_v6_11652_0_1, [Score=206, Expect=3e-57]} {RNA1509_6083} {RNA1310_2997} {RNA815_2584.1}
5. MligTC455_37497 1276 26.59 Mlig455_062603

Neo: -

Age: logFC(26M/2M)=-0.201

 AMPD2 0.961 - - - 0.961 - - Mlig455_062603 {REF} {Length: 3114} {TRANSSPLICED} {Pfam: AMP deaminase [PF19326.1, score=881.0]; Adenosine deaminase [PF00962.24, score=44.3]} {Human: ENSG00000116337, AMPD2, adenosine monophosphate deaminase 2, [Score=775, Expect=0.0]} {Mouse: ENSMUSG00000027889, Ampd2, adenosine monophosphate deaminase 2, [Score=776, Expect=0.0]} {Dmel: FBgn0052626, AMPdeam, AMP deaminase, [RH, Score=709, Expect=0.0]} {Celegans: WBGene00016415, ampd-1, AMP deaminase, [RH, Score=697, Expect=0.0]} {Smed: dd_Smed_v6_9436_0_1, dd_Smed_v6_9436_0_1, [RH, Score=702, Expect=0.0]} {RNA1509_21412, RNA1509_51101, RNA1509_7594} {RNA1310_4970, RNA1509_21412, RNA1509_51101, RNA1509_7594} {RNA1509_21412, RNA1509_51101, RNA1509_7594, RNA815_1496.1}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA