M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32322

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32322 65 1.36 Mlig455_046170

Neo: -

Age: -

 Mlig455_046170 {REF} {Length: 1617} {TRANSSPLICED} {Pfam: Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=21.3]} {RNA1509_7761} {RNA1310_72797} {RNA815_40946}

Cumulative graph for MligTC455_32322

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 2.112 1.431 0.33271 0.97879
RegionR2 0.01 1.431 0.98212 1.00000
RegionR3 -0.149 1.431 0.85638 1.00000
RegionR4 -0.702 1.431 0.54574 0.86744
RegionR5 -0.071 1.431 0.91301 1.00000
RegionR6 -1.003 1.431 0.29878 0.89031
RegionR7 -0.523 1.431 0.71145 1.00000
RegionR8 0.326 1.431 0.82920 1.00000

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.375 1.431 0.48826 1.00000
RegenerationR2 0.771 1.431 0.39628 0.81279
RegenerationR3 0.446 1.431 0.65069 0.92925
RegenerationR4 0.627 1.431 0.56501 0.89903
RegenerationR5 0.74 1.431 0.36957 0.77969
RegenerationR6 0.227 1.431 0.88795 1.00000
RegenerationBL 2.216 1.431 0.07317 0.31564
RegenerationTP 0.343 1.431 0.81487 1.00000


Genes with expression patterns similar to MligTC455_32322

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32322 65 1.36 Mlig455_046170

Neo: -

Age: -

 4 1.000 1.000 - 1.000 - 1.000 Mlig455_046170 {REF} {Length: 1617} {TRANSSPLICED} {Pfam: Tyrosine-protein kinase ephrin type A/B receptor-like [PF07699.15, score=21.3]} {RNA1509_7761} {RNA1310_72797} {RNA815_40946}
2. MligTC455_32647 7 0.14 Mlig455_062459

Neo: -

Age: -

 0.995 - - - 0.995 - - Mlig455_062459 {REF} {Length: 609} {NoTransDecoderORF} {RNA1310_107763}
3. MligTC455_13380 416 8.66 Mlig455_006070, Mlig455_008864, Mlig455_008963, Mlig455_045118, Mlig455_045154

Neo: -

Age: Down-Up-Down

 0.977 - - - 0.977 - -

Mlig455_006070 {REF} {Length: 868} {NoTransDecoderORF} {RNA1509_37224} {RNA1310_43033} {RNA815_27145}

Mlig455_008864 {REF} {Length: 811} {TRANSSPLICED} {RNA1509_37224} {RNA1310_43033, RNA1509_37224} {RNA1509_37224, RNA815_27145}

Mlig455_008963 {REF} {Length: 807} {TRANSSPLICED} {RNA1509_37224} {RNA1310_43033} {RNA815_27145}

Mlig455_045118 {REF} {Length: 375} {NoTransDecoderORF} {RNA1509_41972} {RNA1310_43033} {RNA815_56528}

Mlig455_045154 {REF} {Length: 638} {RNA1509_41972} {RNA1310_43033} {RNA815_27145}
4. MligTC455_56421 59 1.23 Mlig455_066824

Neo: -

Age: -

 0.976 - - - - - 0.976 Mlig455_066824 {REF} {Length: 413} {RNA1509_38728} {RNA1310_9789} {RNA815_21216}
5. MligTC455_10050 40 0.83 Mlig455_058705

Neo: -

Age: -

 0.975 - - - 0.975 - - Mlig455_058705 {REF} {Length: 468} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_44921} {RNA1310_81603} {RNA815_51180}
6. MligTC455_15387 936 19.51 Mlig455_009726

Neo: Irradiation

Age: Down-Up-Up, logFC(26M/2M)=0.329

Region-enriched R5: 4.267/0.00000
Region-enriched R6: 2.607/0.01858

 CDC42BPA 0.975 - - - 0.975 - - Mlig455_009726 {REF} {Length: 2686} {Pfam: Protein kinase domain [PF00069.27, score=84.4]; Protein tyrosine and serine/threonine kinase [PF07714.19, score=47.6]} {Human: ENSG00000143776, CDC42BPA, CDC42 binding protein kinase alpha, [Score=78.2, Expect=3e-14]; ENSG00000177189, RPS6KA3, ribosomal protein S6 kinase A3, [Score=78.2, Expect=3e-14]; ENSG00000104936, DMPK, DM1 protein kinase, [Score=77.0, Expect=4e-14]; ENSG00000122966, CIT, citron rho-interacting serine/threonine kinase, [Score=77.0, Expect=3e-14]; ENSG00000171219, CDC42BPG, CDC42 binding protein kinase gamma, [Score=75.5, Expect=2e-13]; ENSG00000117676, RPS6KA1, ribosomal protein S6 kinase A1, [Score=75.1, Expect=2e-13]; ENSG00000281877, RPS6KA1, ribosomal protein S6 kinase A1, [Score=75.1, Expect=2e-13]; ENSG00000198752, CDC42BPB, CDC42 binding protein kinase beta, [Score=75.1, Expect=3e-13]; ENSG00000071242, RPS6KA2, ribosomal protein S6 kinase A2, [Score=74.3, Expect=4e-13]; ENSG00000125388, GRK4, G protein-coupled receptor kinase 4, [Score=74.3, Expect=2e-13]} {Mouse: ENSMUSG00000026490, Cdc42bpa, CDC42 binding protein kinase alpha, [Score=79.0, Expect=1e-14]; ENSMUSG00000031309, Rps6ka3, ribosomal protein S6 kinase polypeptide 3, [Score=78.2, Expect=2e-14]; ENSMUSG00000030409, Dmpk, dystrophia myotonica-protein kinase, [Score=76.6, Expect=4e-14]; ENSMUSG00000003644, Rps6ka1, ribosomal protein S6 kinase polypeptide 1, [Score=75.9, Expect=8e-14]; ENSMUSG00000029516, Cit, citron, [Score=75.5, Expect=1e-13]; ENSMUSG00000024290, Rock1, Rho-associated coiled-coil containing protein kinase 1, [Score=75.5, Expect=8e-14]; ENSMUSG00000024769, Cdc42bpg, CDC42 binding protein kinase gamma (DMPK-like), [Score=75.5, Expect=2e-13]; ENSMUSG00000107268, Cdc42bpg, CDC42 binding protein kinase gamma (DMPK-like), [Score=75.5, Expect=2e-13]; ENSMUSG00000021279, Cdc42bpb, CDC42 binding protein kinase beta, [Score=75.1, Expect=2e-13]} {Dmel: FBgn0023081, gek, genghis khan, [Score=75.9, Expect=7e-14]} {Celegans: WBGene00006437, mrck-1, Serine/threonine-protein kinase mrck-1, [Score=77.4, Expect=2e-14]} {Smed: dd_Smed_v6_4316_0_1, dd_Smed_v6_4316_0_1, [Score=79.0, Expect=3e-15]} {RNA1509_6923} {RNA1310_7715.1, RNA1509_6923} {RNA1509_6923, RNA815_12455}
7. MligTC455_22190 155 3.23 Mlig455_037448

Neo: -

Age: Down-Up-Down

 0.974 - - - 0.974 - - Mlig455_037448 {REF} {Length: 1280} {TRANSSPLICED} {RNA1509_26312} {RNA1310_42598} {RNA815_21773}
8. MligTC455_05557 49 1.02 Mlig455_054327

Neo: -

Age: -

Region-enriched R4: 4.473/0.00273

 0.972 - - - 0.972 - - Mlig455_054327 {REF} {Length: 519} {NoTransDecoderORF} {RNA1509_38197} {RNA1310_90831} {RNA815_43533}
9. MligTC455_33651 21 0.43 Mlig455_019319

Neo: Germline

Age: Up-Down-Down

 PLD2 0.969 - - - 0.969 - - Mlig455_019319 {REF} {Length: 8978} {Human: ENSG00000129219, PLD2, phospholipase D2, [Score=172, Expect=1e-42]} {Mouse: ENSMUSG00000020828, Pld2, phospholipase D2, [Score=171, Expect=2e-42]} {Dmel: FBgn0033075, Pld, Phospholipase D, [Score=149, Expect=1e-35]} {Celegans: WBGene00004040, pld-1, PhosphoLipase D; Phospholipase D, [Score=155, Expect=1e-37]} {Smed: dd_Smed_v6_61149_0_1, dd_Smed_v6_61149_0_1, [Score=170, Expect=1e-45]} {RNA1509_8481} {RNA1310_1353.1} {RNA815_2465}
10. MligTC455_11057 29 0.6 Mlig455_021175, Mlig455_021221, Mlig455_057876

Neo: -

Age: -

 ZFP36L1 0.968 - - - 0.968 - -

Mlig455_021175 {REF} {Length: 1478} {Pfam: Zinc finger C-x8-C-x5-C-x3-H type (and similar) [PF00642.26, score=58.8]; Zinc finger domain [PF18345.3, score=35.7]; RNA-binding, Nab2-type zinc finger [PF14608.8, score=29.0]; CCCH-type zinc finger [PF18044.3, score=28.1]} {Human: ENSG00000185650, ZFP36L1, ZFP36 ring finger protein like 1, [Score=67.8, Expect=2e-14]; ENSG00000152518, ZFP36L2, ZFP36 ring finger protein like 2, [Score=66.2, Expect=9e-14]} {Mouse: ENSMUSG00000059334, Zfp36l3, zinc finger protein 36, C3H type-like 3, [Score=69.7, Expect=4e-15]; ENSMUSG00000021127, Zfp36l1, zinc finger protein 36, C3H type-like 1, [Score=68.6, Expect=7e-15]} {Dmel: FBgn0011837, Tis11, Tis11 zinc finger protein, [Score=69.3, Expect=4e-15]} {Celegans: WBGene00007961, C35D6.4, [RH, Score=66.6, Expect=6e-15]} {RNA1310_91211} {RNA815_52611}

Mlig455_021221 {REF} {Length: 3154} {RNA1509_23663} {RNA1310_23883} {RNA815_16092}

Mlig455_057876 {REF} {Length: 2829} {RNA1509_23663} {RNA1310_23883} {RNA815_16092}
11. MligTC455_11542 573 11.94 Mlig455_044768, Mlig455_053665

Neo: -

Age: Down-Down-Down, logFC(26M/2M)=-1.653

Region-enriched R4: 2.751/0.02031
Region-enriched R5: 2.169/0.03057

 0.962 - - - 0.962 - -

Mlig455_044768 {REF} {Length: 686} {RNA1509_9067} {RNA1310_61939} {RNA815_30221.1}

Mlig455_053665 {REF} {Length: 674} {RNA1509_9067} {RNA1310_61939} {RNA815_30221.1}
12. MligTC455_08915 221 4.59 Mlig455_022738

Neo: -

Age: Up-Down-Down, logFC(26M/2M)=-0.442

Region-enriched R5: 2.593/0.00089

 0.961 - - - - - 0.961 Mlig455_022738 {REF} {Length: 2881} {Pfam: Innexin [PF00876.20, score=285.0]} {Dmel: FBgn0265274, Inx3, Innexin 3, [Score=93.2, Expect=2e-20]} {Celegans: WBGene00002123, inx-1, Innexin, [Score=188, Expect=1e-54]} {Smed: dd_Smed_v6_692_0_1, dd_Smed_v6_692_0_1, [Score=310, Expect=9e-102]} {RNA1509_35063, RNA1509_50192} {RNA1310_11561.1, RNA1509_35063, RNA1509_50192} {RNA1509_35063, RNA1509_50192, RNA815_7858}
13. MligTC455_21071 9 0.18 Mlig455_001747, Mlig455_001769

Neo: -

Age: Up-Up-Down, logFC(26M/2M)=-0.486

 0.961 - - - 0.961 - -

Mlig455_001747 {REF} {Length: 595} {NoTransDecoderORF} {RNA1509_13258} {RNA1310_17309} {RNA815_9139.2}

Mlig455_001769 {REF} {Length: 614} {NoTransDecoderORF} {RNA1509_13258} {RNA1310_17309} {RNA815_9139.2}
14. MligTC455_08635 33 0.69 Mlig455_041022, Mlig455_041189

Neo: -

Age: -

 0.96 - - - 0.960 - -

Mlig455_041022 {REF} {Length: 1305} {RNA1509_53357} {RNA1310_12881} {RNA815_27630}

Mlig455_041189 {REF} {Length: 1255} {RNA1509_53357} {RNA1310_12881} {RNA815_27630}
15. MligTC455_48143 323 6.73 Mlig455_032501, Mlig455_068680

Neo: -

Age: -

 SLC22A3, SLC22A7 0.959 - - - - - 0.959

Mlig455_032501 {REF} {Length: 2321} {Pfam: Sugar (and other) transporter [PF00083.26, score=58.7]} {Human: ENSG00000146477, SLC22A3, solute carrier family 22 member 3, [Score=143, Expect=2e-36]; ENSG00000197901, SLC22A6, solute carrier family 22 member 6, [Score=140, Expect=3e-35]; ENSG00000172940, SLC22A13, solute carrier family 22 member 13, [Score=139, Expect=5e-35]; ENSG00000197375, SLC22A5, solute carrier family 22 member 5, [Score=137, Expect=3e-34]} {Mouse: ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=151, Expect=3e-39]; ENSMUSG00000023828, Slc22a3, solute carrier family 22 (organic cation transporter), member 3, [Score=145, Expect=2e-37]} {Dmel: FBgn0034479, CG8654, [Score=143, Expect=6e-37]} {Celegans: WBGene00022348, Y82E9BR.16, [Score=122, Expect=1e-29]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=134, Expect=9e-34]} {RNA1509_31974} {RNA1310_8802} {RNA815_4742}

Mlig455_068680 {REF} {Length: 2607} {Pfam: Sugar (and other) transporter [PF00083.26, score=89.9]; Major Facilitator Superfamily [PF07690.18, score=62.1]} {Human: ENSG00000137204, SLC22A7, solute carrier family 22 member 7, [Score=192, Expect=1e-53]; ENSG00000197901, SLC22A6, solute carrier family 22 member 6, [Score=190, Expect=1e-52]} {Mouse: ENSMUSG00000063652, Slc22a21, solute carrier family 22 (organic cation transporter), member 21, [Score=202, Expect=4e-57]} {Dmel: FBgn0034479, CG8654, [Score=196, Expect=1e-55]} {Celegans: WBGene00022348, Y82E9BR.16, [Score=175, Expect=1e-47]} {Smed: dd_Smed_v6_10826_0_2, dd_Smed_v6_10826_0_2, [Score=167, Expect=5e-45]} {RNA1509_31974} {RNA1310_8802, RNA1509_31974} {RNA1509_31974, RNA815_4742}
16. MligTC455_31840 149 3.11 Mlig455_015884

Neo: -

Age: -

 0.957 - - - - - 0.957 Mlig455_015884 {REF} {Length: 3104} {RNA1509_19124} {RNA1310_1002.1} {RNA815_889}
17. MligTC455_09828 80 1.67 Mlig455_052764

Neo: -

Age: -

 0.954 - - - - - 0.954 Mlig455_052764 {REF} {Length: 1206} {NoTransDecoderORF} {RNA1310_17510.1} {RNA815_9674}
18. MligTC455_15282 31 0.65 Mlig455_003602, Mlig455_041578

Neo: -

Age: -

 ASIC3 0.953 - - - 0.953 - -

Mlig455_003602 {REF} {Length: 2509} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=209.5]} {Human: ENSG00000213199, ASIC3, acid sensing ion channel subunit 3, [Score=68.6, Expect=3e-11]} {Mouse: ENSMUSG00000038276, Asic3, acid-sensing (proton-gated) ion channel 3, [Score=79.3, Expect=7e-15]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=83.2, Expect=2e-16]} {Smed: dd_Smed_v6_17021_0_1, dd_Smed_v6_17021_0_1, [Score=68.6, Expect=6e-12]} {RNA1509_55009} {RNA1310_54440} {RNA815_29220}

Mlig455_041578 {REF} {Length: 3160} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=209.6]} {Human: ENSG00000213199, ASIC3, acid sensing ion channel subunit 3, [Score=68.6, Expect=3e-11]} {Mouse: ENSMUSG00000038276, Asic3, acid-sensing (proton-gated) ion channel 3, [Score=79.3, Expect=7e-15]} {Celegans: WBGene00012116, del-4, DEgenerin Like, [Score=83.2, Expect=2e-16]} {Smed: dd_Smed_v6_17021_0_1, dd_Smed_v6_17021_0_1, [Score=68.9, Expect=6e-12]} {RNA1509_55009} {RNA1310_54440} {RNA815_29220}
19. MligTC455_50515 62 1.29 Mlig455_055065

Neo: -

Age: -

Region-enriched R4: 4.658/0.00950

 0.953 - - - - - 0.953 Mlig455_055065 {REF} {Length: 1125} {NoTransDecoderORF} {RNA1310_7311} {RNA815_32403}
20. MligTC455_39981 457 9.52 Mlig455_028079

Neo: Int S/G2/M

Age: -

 MRPL17 0.952 - - - - - 0.952 Mlig455_028079 {REF} {Length: 1342} {TRANSSPLICED} {Pfam: Ribosomal protein L17 [PF01196.21, score=29.7]} {Human: ENSG00000158042, MRPL17, mitochondrial ribosomal protein L17, [RH, Score=57.4, Expect=3e-10]} {Mouse: ENSMUSG00000030879, Mrpl17, mitochondrial ribosomal protein L17, [RH, Score=57.8, Expect=2e-10]} {Dmel: FBgn0035122, mRpL17, mitochondrial ribosomal protein L17, [RH, Score=67.0, Expect=4e-14]} {Smed: dd_Smed_v6_3289_0_1, dd_Smed_v6_3289_0_1, [RH, Score=105, Expect=1e-28]} {RNA1509_21955, RNA1509_25190} {RNA1310_25456, RNA1509_21955, RNA1509_25190} {RNA1509_21955, RNA1509_25190, RNA815_9956}
21. MligTC455_19216 82 1.71 Mlig455_038007

Neo: Int S/G2/M

Age: -

 0.95 - - - - - 0.950 Mlig455_038007 {REF} {Length: 2594} {TRANSSPLICED} {RNA1509_48249} {RNA1310_31830} {RNA815_49860}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA