TomoSeq data search

Data search

Results for MligTC455_32435

Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Annotation
MligTC455_32435	68	1.42	Mlig455_025058	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.638		Mlig455_025058 {REF} {Length: 6341} {Mouse: ENSMUSG00000043183, Simc1, SUMO-interacting motifs containing 1, [Score=58.2, Expect=1e-07]} {RNA1509_27520, RNA1509_33149, RNA1509_59656} {RNA1310_50.1, RNA1509_27520, RNA1509_33149, RNA1509_59656} {RNA1509_27520, RNA1509_33149, RNA1509_59656, RNA815_5201}

Cluster

Total UMI counts

Global CPM

Transcripts

Cumulative graph for MligTC455_32435

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR
RegionR1	-5.551	1.635	0.99956	1.00000
RegionR2	2.676	1.635	0.08959	0.36704
RegionR3	2.283	1.635	0.09944	0.55205
RegionR4	1.372	1.635	0.27889	0.58611
RegionR5	1.999	1.635	0.11945	0.34537
RegionR6	1.182	1.635	0.41818	0.98606
RegionR7	0.168	1.635	0.76833	1.00000
RegionR8	-4.128	1.635	1.00000	1.00000

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR
RegenerationR1	0.011	1.635	0.99997	1.00000
RegenerationR2	-0.316	1.635	0.68336	0.94997
RegenerationR3	0.453	1.635	0.60889	0.91213
RegenerationR4	0.408	1.635	0.64700	0.93168
RegenerationR5	0.78	1.635	0.35720	0.76914
RegenerationR6	1.225	1.635	0.24910	0.59784
RegenerationBL	3.27	1.635	0.03905	0.22391
RegenerationTP	1.966	1.635	0.43790	0.85871

Genes with expression patterns similar to MligTC455_32435

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_32435	68	1.42	Mlig455_025058	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.638		4	-	-	1.000	1.000	1.000	1.000	Mlig455_025058 {REF} {Length: 6341} {Mouse: ENSMUSG00000043183, Simc1, SUMO-interacting motifs containing 1, [Score=58.2, Expect=1e-07]} {RNA1509_27520, RNA1509_33149, RNA1509_59656} {RNA1310_50.1, RNA1509_27520, RNA1509_33149, RNA1509_59656} {RNA1509_27520, RNA1509_33149, RNA1509_59656, RNA815_5201}
2.	MligTC455_32436	43	0.91	Mlig455_025074	Neo: - Age: -		2.846	-	-	-	0.965	0.918	0.963	Mlig455_025074 {REF} {Length: 2851} {RNA1509_1845} {RNA1310_50.1} {RNA815_5933}
3.	MligTC455_38208	50	1.04	Mlig455_035776, Mlig455_035887	Neo: - Age: -		1.817	-	-	-	-	0.858	0.959	Mlig455_035776 {REF} {Length: 1950} {NoTransDecoderORF} {RNA1509_38476} {RNA1310_59018} {RNA815_41854} Mlig455_035887 {REF} {Length: 1158} {NoTransDecoderORF} {RNA1509_38476} {RNA1310_73426.1} {RNA815_42145}
4.	MligTC455_31602	208	4.33	Mlig455_031241, Mlig455_031248	Neo: - Age: -		1.656	-	-	-	0.704	-	0.952	Mlig455_031241 {REF} {Length: 1588} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_36986} {RNA1310_4605} {RNA815_16115.1} Mlig455_031248 {REF} {Length: 2570} {TRANSSPLICED} {RNA1509_36986} {RNA1310_45653} {RNA815_16115.2}
5.	MligTC455_03331	12	0.26	Mlig455_058105	Neo: - Age: Down-Up-Up		0.965	-	-	-	-	-	0.965	Mlig455_058105 {REF} {Length: 1419} {RNA1509_47925} {RNA1310_20442.1} {RNA815_10982}
6.	MligTC455_23568	23	0.47	Mlig455_061665	Neo: - Age: -		0.961	-	-	-	-	-	0.961	Mlig455_061665 {REF} {Length: 1787} {NoTransDecoderORF} {RNA1509_10924} {RNA1310_115958} {RNA815_9399}
7.	MligTC455_23808	31	0.65	Mlig455_059306	Neo: - Age: Down-Down-Up		0.96	-	-	-	-	-	0.960	Mlig455_059306 {REF} {Length: 1845} {Pfam: Pacifastin inhibitor (LCMII) [PF05375.15, score=30.7]} {RNA1509_46843} {RNA1310_11232} {RNA815_41042}
8.	MligTC455_28796	121	2.53	Mlig455_000324, Mlig455_013478, Mlig455_013479, Mlig455_020608, Mlig455_044509	Neo: - Age: -		0.959	-	-	-	-	-	0.959	Mlig455_000324 {REF} {Length: 1035} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=38.7]; Integrase zinc binding domain [PF17921.3, score=35.8]; H2C2 zinc finger [PF09337.12, score=19.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=49.7, Expect=2e-06]} {RNA1509_50200} {RNA1310_832} {RNA815_31737} Mlig455_013478 {REF} {Length: 907} {Pfam: RNase H-like domain found in reverse transcriptase [PF17917.3, score=38.7]; Integrase zinc binding domain [PF17921.3, score=35.8]; H2C2 zinc finger [PF09337.12, score=19.7]} {Smed: dd_Smed_v6_3718_0_2, dd_Smed_v6_3718_0_2, [Score=49.7, Expect=2e-06]} {RNA1310_832} {RNA815_31737} Mlig455_013479 {REF} {Length: 1374} {NoTransDecoderORF} {RNA1509_53012} {RNA1310_64055} {RNA815_9365} Mlig455_020608 {REF} {Length: 12424} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=151.6]} {Smed: dd_Smed_v6_8949_0_1, dd_Smed_v6_8949_0_1, [Score=74.7, Expect=6e-14]} {RNA1509_53012} {RNA1310_832} {RNA815_19380} Mlig455_044509 {REF} {Length: 12424} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=151.9]} {Smed: dd_Smed_v6_8949_0_1, dd_Smed_v6_8949_0_1, [Score=74.7, Expect=7e-14]} {RNA1509_53012} {RNA1310_832, RNA1509_53012} {RNA1509_53012, RNA815_19380}
9.	MligTC455_31325	78	1.62	Mlig455_026709, Mlig455_044580, Mlig455_050736, Mlig455_050745	Neo: - Age: -		0.957	-	-	-	-	-	0.957	Mlig455_026709 {REF} {Length: 5107} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=119.6]; Endonuclease/Exonuclease/phosphatase family [PF03372.25, score=19.1]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=65.1, Expect=2e-12]} {RNA1509_47056} {RNA1310_5710.1} {RNA815_6291.1} Mlig455_044580 {REF} {Length: 2183} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=80.6]} {RNA1509_47056} {RNA1310_3828} {RNA815_6291.1} Mlig455_050736 {REF} {Length: 1564} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.6]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=65.9, Expect=7e-13]} {RNA1509_47056} {RNA1310_5710.1} {RNA815_15609} Mlig455_050745 {REF} {Length: 1565} {TRANSSPLICED} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=121.6]} {Smed: dd_Smed_v6_26484_0_6, dd_Smed_v6_26484_0_6, [Score=65.9, Expect=7e-13]} {RNA1509_47056} {RNA1310_5710.1} {RNA815_15609}
10.	MligTC455_34065	155	3.22	Mlig455_057127	Neo: - Age: Up-Down-Up		0.957	-	-	-	-	-	0.957	Mlig455_057127 {REF} {Length: 9700} {RNA1509_19375, RNA1509_20753, RNA1509_27043, RNA1509_49996} {RNA1310_9943, RNA1509_20753, RNA1509_27043, RNA1509_49996} {RNA1509_20753, RNA1509_27043, RNA1509_49996, RNA815_25153}
11.	MligTC455_35879	70	1.45	Mlig455_043343	Neo: - Age: -	NR4A3	0.957	-	-	-	-	-	0.957	Mlig455_043343 {REF} {Length: 4323} {Pfam: Zinc finger, C4 type (two domains) [PF00105.20, score=109.8]} {Human: ENSG00000119508, NR4A3, nuclear receptor subfamily 4 group A member 3, [RH, Score=168, Expect=1e-44]} {Mouse: ENSMUSG00000023034, Nr4a1, nuclear receptor subfamily 4, group A, member 1, [Score=173, Expect=2e-45]; ENSMUSG00000028341, Nr4a3, nuclear receptor subfamily 4, group A, member 3, [Score=167, Expect=5e-43]} {Dmel: FBgn0014859, Hr38, Hormone receptor-like in 38, [Score=157, Expect=2e-39]} {Celegans: WBGene00003605, nhr-6, Nuclear hormone receptor family member nhr-6, [Score=148, Expect=6e-38]} {Smed: dd_Smed_v6_12229_0_1, dd_Smed_v6_12229_0_1, [Score=236, Expect=5e-66]} {RNA1509_34082, RNA1509_57832} {RNA1310_20528.1, RNA1509_57832} {RNA1509_57832, RNA815_30713}
12.	MligTC455_27846	65	1.35	Mlig455_062268	Neo: - Age: -		0.955	-	-	-	-	-	0.955	Mlig455_062268 {REF} {Length: 6610} {Pfam: RNase H-like domain found in reverse transcriptase [PF17919.3, score=128.3]; RNase H-like domain found in reverse transcriptase [PF17917.3, score=113.8]; Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.29, score=76.6]; Integrase zinc binding domain [PF17921.3, score=71.0]; Integrase core domain [PF00665.28, score=47.5]; Aspartyl protease [PF13650.8, score=38.9]; gag-polyprotein putative aspartyl protease [PF13975.8, score=34.5]; Retroviral aspartyl protease [PF00077.22, score=26.8]; Aspartyl protease [PF09668.12, score=22.8]; Putative peptidase (DUF1758) [PF05585.14, score=21.8]; Retroviral aspartyl protease [PF08284.13, score=18.9]; DDE superfamily endonuclease [PF13358.8, score=18.6]} {Smed: dd_Smed_v6_1574_6_41, dd_Smed_v6_1574_6_41, [Score=335, Expect=6e-100]} {RNA1509_20493} {RNA1310_131.1} {RNA815_52.1}
13.	MligTC455_44993	102	2.13	Mlig455_068082	Neo: - Age: Up-Up-Down, logFC(26M/2M)=0.499 Region-enriched R4: 3.035/0.03492	MEN1	0.955	-	-	-	-	-	0.955	Mlig455_068082 {REF} {Length: 4679} {TRANSSPLICED} {Pfam: Menin [PF05053.15, score=359.0]} {Human: ENSG00000133895, MEN1, menin 1, [RH, Score=259, Expect=6e-77]} {Mouse: ENSMUSG00000024947, Men1, multiple endocrine neoplasia 1, [RH, Score=258, Expect=2e-76]; ENSMUSG00000106695, Men1, multiple endocrine neoplasia 1, [RH, Score=258, Expect=2e-76]} {Dmel: FBgn0031885, Mnn1, Menin 1, [RH, Score=219, Expect=4e-61]} {Smed: dd_Smed_v6_11544_0_1, dd_Smed_v6_11544_0_1, [RH, Score=206, Expect=2e-56]} {RNA1509_25186} {RNA1310_10581.1} {RNA815_3602}
14.	MligTC455_16155	68	1.41	Mlig455_036156	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_036156 {REF} {Length: 824} {NoTransDecoderORF} {RNA1509_16255} {RNA1310_42433.1} {RNA815_22226}
15.	MligTC455_39810	156	3.25	Mlig455_039453	Neo: - Age: -		0.954	-	-	-	-	-	0.954	Mlig455_039453 {REF} {Length: 3274} {RNA1509_51368, RNA1509_56186, RNA1509_6550} {RNA1310_21584, RNA1509_51368, RNA1509_56186} {RNA1509_51368, RNA1509_56186, RNA815_10065}
16.	MligTC455_37105	54	1.13	Mlig455_057732	Neo: - Age: -	ANGPTL1	0.953	-	-	-	-	-	0.953	Mlig455_057732 {REF} {Length: 2404} {Pfam: Fibrinogen beta and gamma chains, C-terminal globular domain [PF00147.20, score=107.4]} {Human: ENSG00000116194, ANGPTL1, angiopoietin like 1, [Score=94.7, Expect=8e-21]; ENSG00000136859, ANGPTL2, angiopoietin like 2, [Score=90.9, Expect=1e-19]} {Mouse: ENSMUSG00000033544, Angptl1, angiopoietin-like 1, [Score=92.8, Expect=2e-20]; ENSMUSG00000004105, Angptl2, angiopoietin-like 2, [Score=90.9, Expect=9e-20]} {Dmel: FBgn0050280, CG30280, [Score=88.6, Expect=6e-20]} {Celegans: WBGene00017013, ensh-1, [Score=61.6, Expect=2e-10]} {Smed: dd_Smed_v6_18326_0_1, dd_Smed_v6_18326_0_1, [Score=85.1, Expect=5e-18]} {RNA1509_49031} {RNA1310_45132} {RNA815_44160}
17.	MligTC455_09045	28	0.58	Mlig455_030695	Neo: - Age: - Region-enriched R3: 3.801/0.03726		0.952	-	-	-	-	-	0.952	Mlig455_030695 {REF} {Length: 163} {NoTransDecoderORF}
18.	MligTC455_06915	15	0.31	Mlig455_002666	Neo: - Age: -		0.951	-	-	-	-	-	0.951	Mlig455_002666 {REF} {Length: 486} {NoTransDecoderORF}
19.	MligTC455_33203	151	3.15	Mlig455_033692, Mlig455_050137	Neo: - Age: -		0.951	-	-	-	-	-	0.951	Mlig455_033692 {REF} {Length: 1036} {NoTransDecoderORF} {RNA1509_59732} {RNA1310_52952} {RNA815_34163} Mlig455_050137 {REF} {Length: 1740} {NoTransDecoderORF} {RNA1509_59732, RNA1509_60018} {RNA1310_63905.1, RNA1509_59732, RNA1509_60018} {RNA1509_59732, RNA1509_60018, RNA815_34163}
20.	MligTC455_53149	35	0.73	Mlig455_028208	Neo: - Age: -		0.951	-	-	-	-	-	0.951	Mlig455_028208 {REF} {Length: 2344} {RNA1509_40765} {RNA1310_47463} {RNA815_27999}
21.	MligTC455_16927	164	3.42	Mlig455_049788	Neo: - Age: Down-Down-Up Region-enriched R5: 1.406/0.02662	HBS1L	0.95	-	-	-	-	0.950	-	Mlig455_049788 {REF} {Length: 2488} {TRANSSPLICED} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=148.0]; Uncharacterised protein family UPF0047 [PF01894.19, score=124.0]; Elongation factor Tu C-terminal domain [PF03143.19, score=53.4]; 50S ribosome-binding GTPase [PF01926.25, score=25.3]} {Human: ENSG00000112339, HBS1L, HBS1 like translational GTPase, [RH, Score=441, Expect=2e-145]} {Mouse: ENSMUSG00000019977, Hbs1l, Hbs1-like (S. cerevisiae), [RH, Score=405, Expect=3e-131]} {Dmel: FBgn0042712, HBS1, [RH, Score=414, Expect=7e-135]} {Celegans: WBGene00010622, K07A12.4, [RH, Score=337, Expect=3e-106]} {Smed: dd_Smed_v6_9327_0_1, dd_Smed_v6_9327_0_1, [RH, Score=397, Expect=3e-129]} {RNA1509_18150} {RNA1310_11738} {RNA815_5048.1}
22.	MligTC455_22481	83	1.72	Mlig455_019186	Neo: - Age: -		0.95	-	-	-	-	-	0.950	Mlig455_019186 {REF} {Length: 1281} {RNA1509_29601} {RNA1310_30845} {RNA815_46080.1}