M. lignano Tomo-Seq
Mlig455 transcriptome Search Regeneration Regions Sections Download

Data search


search
Exact
Search

Results for MligTC455_32461

Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Annotation
MligTC455_32461 372 7.74 Mlig455_066539

Neo: -

Age: Up-Down-Up

 BLVRB Mlig455_066539 {REF} {Length: 2393} {TRANSSPLICED} {Pfam: NAD(P)H-binding [PF13460.8, score=112.6]; NmrA-like family [PF05368.15, score=41.6]} {Human: ENSG00000090013, BLVRB, biliverdin reductase B, [RH, Score=64.7, Expect=3e-12]} {Mouse: ENSMUSG00000040466, Blvrb, biliverdin reductase B (flavin reductase (NADPH)), [RH, Score=63.5, Expect=6e-12]} {RNA1509_43611} {RNA1310_56475} {RNA815_16010.1}

Cumulative graph for MligTC455_32461

Region-enriched expression

Region logFC logCPM Pvalue FDR Specificity
RegionR1 -1.632 3.361 0.24258 0.88930
RegionR2 0.678 3.361 0.21905 0.58713
RegionR3 0.537 3.361 0.21224 0.75366
RegionR4 -1.13 3.361 0.03929 0.16345
RegionR5 -0.724 3.361 0.10455 0.31432
RegionR6 0.043 3.361 0.92169 1.00000
RegionR7 1.154 3.361 0.02219 0.27728
RegionR8 1.075 3.361 0.08645 0.55673

Regeneration-enriched expression

Region logFC logCPM PValue FDR Specificity
RegenerationR1 -4.847 3.361 0.39407 1.00000
RegenerationR2 0.049 3.361 0.90972 1.00000
RegenerationR3 -0.561 3.361 0.26623 0.70101
RegenerationR4 0.498 3.361 0.33752 0.77014
RegenerationR5 -0.065 3.361 0.89507 1.00000
RegenerationR6 -0.479 3.361 0.38181 0.72258
RegenerationBL -0.973 3.361 0.13525 0.43812
RegenerationTP -1.017 3.361 0.11309 0.51663


Genes with expression patterns similar to MligTC455_32461

Nr. Cluster Total UMI counts Global CPM Transcripts Categories Human homolog Σ Spearman correlations Int1 Int2 Int3 Reg1 Reg2 Reg3 Annotation
1. MligTC455_32461 372 7.74 Mlig455_066539

Neo: -

Age: Up-Down-Up

 BLVRB 6 1.000 1.000 1.000 1.000 1.000 1.000 Mlig455_066539 {REF} {Length: 2393} {TRANSSPLICED} {Pfam: NAD(P)H-binding [PF13460.8, score=112.6]; NmrA-like family [PF05368.15, score=41.6]} {Human: ENSG00000090013, BLVRB, biliverdin reductase B, [RH, Score=64.7, Expect=3e-12]} {Mouse: ENSMUSG00000040466, Blvrb, biliverdin reductase B (flavin reductase (NADPH)), [RH, Score=63.5, Expect=6e-12]} {RNA1509_43611} {RNA1310_56475} {RNA815_16010.1}
2. MligTC455_46588 627 13.06 Mlig455_061815, Mlig455_061852

Neo: -

Age: Up-Down-Down

 1.782 - - - 0.827 0.955 -

Mlig455_061815 {REF} {Length: 1256} {RNA1509_53624} {RNA1310_26047.1} {RNA815_690.1}

Mlig455_061852 {REF} {Length: 2071} {RNA1509_53624} {RNA1310_26047.1} {RNA815_690.1}
3. MligTC455_21743 695 14.47 Mlig455_068753

Neo: -

Age: -

 CYLD 0.982 - - - - 0.982 - Mlig455_068753 {REF} {Length: 4221} {TRANSSPLICED} {Pfam: CAP-Gly domain [PF01302.27, score=33.5]} {Human: ENSG00000083799, CYLD, CYLD lysine 63 deubiquitinase, [RH, Score=285, Expect=8e-83]} {Mouse: ENSMUSG00000036712, Cyld, CYLD lysine 63 deubiquitinase, [RH, Score=286, Expect=2e-83]} {Dmel: FBgn0032210, CYLD, Cylindromatosis, [Score=300, Expect=2e-92]} {Celegans: WBGene00009594, cyld-1, CYLinDromatosis (Human disease gene) homolog, [RH, Score=190, Expect=4e-50]} {Smed: dd_Smed_v6_3043_0_1, dd_Smed_v6_3043_0_1, [Score=144, Expect=2e-35]} {RNA1509_13346, RNA1509_29655} {RNA1310_3957.1, RNA1509_29655} {RNA1509_29655, RNA815_1281.1}
4. MligTC455_28517 169 3.52 Mlig455_032503

Neo: -

Age: -

 0.971 - - - - 0.971 - Mlig455_032503 {REF} {Length: 728} {NoTransDecoderORF} {RNA1310_54604.1} {RNA815_39231}
5. MligTC455_56997 40 0.84 Mlig455_017357

Neo: -

Age: -

 0.965 - - - - 0.965 - Mlig455_017357 {REF} {Length: 266} {NoTransDecoderORF}
6. MligTC455_37960 18230 379.78 Mlig455_067109, Mlig455_067122

Neo: Int S/G2/M

Age: -

 UBC 0.963 - - - - 0.963 -

Mlig455_067109 {REF} {Length: 1584} {TRANSSPLICED} {Pfam: Ubiquitin family [PF00240.25, score=550.0]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=271.1]; Ubiquitin-like domain [PF14560.8, score=102.3]; TANK binding kinase 1 ubiquitin-like domain [PF18396.3, score=73.2]; Ubiquitin-2 like Rad60 SUMO-like [PF13881.8, score=67.9]; Ubiquitin-like domain [PF18037.3, score=62.0]; DUF2407 ubiquitin-like domain [PF10302.11, score=55.0]; Silencing defective 2 N-terminal ubiquitin domain [PF13019.8, score=38.1]; Toluene-4-monooxygenase system protein B (TmoB) [PF06234.14, score=35.8]; FlgD Ig-like domain [PF13860.8, score=32.8]; Cilia- and flagella-associated protein 298 [PF11069.10, score=30.1]; Staphylokinase/Streptokinase family [PF02821.18, score=30.0]; Crinkler effector protein N-terminal domain [PF20147.1, score=29.7]; Ubiquitin-like domain [PF18036.3, score=28.7]; UDP-glucose:Glycoprotein Glucosyltransferase [PF06427.13, score=25.0]; GDYXXLXY protein [PF14345.8, score=24.4]; Domain of Unknown Function with PDB structure (DUF3861) [PF12977.9, score=22.8]; Protein of unknown function (DUF969) [PF06149.14, score=22.4]; Rubisco accumulation factor 1 helix turn helix domain [PF18579.3, score=21.0]; Bacterial Ig domain [PF17957.3, score=20.2]; ORF11CD3 domain [PF10549.11, score=19.6]} {Human: ENSG00000150991, UBC, ubiquitin C, [Score=743, Expect=0.0]} {Mouse: ENSMUSG00000008348, Ubc, ubiquitin C, [Score=744, Expect=0.0]} {Dmel: FBgn0086558, Ubi-p5E, Ubiquitin-5E, [Score=744, Expect=0.0]} {Celegans: WBGene00006727, ubq-1, Polyubiquitin-A Ubiquitin Ubiquitin-related, [Score=733, Expect=0.0]} {Smed: dd_Smed_v6_1697_0_2, dd_Smed_v6_1697_0_2, [RH, Score=164, Expect=1e-50]} {RNA1509_199} {RNA1310_58147} {RNA815_13907}

Mlig455_067122 {REF} {Length: 1357} {TRANSSPLICED} {Pfam: Ubiquitin family [PF00240.25, score=443.4]; Ubiquitin-2 like Rad60 SUMO-like [PF11976.10, score=220.3]; Ubiquitin-like domain [PF14560.8, score=85.2]; TANK binding kinase 1 ubiquitin-like domain [PF18396.3, score=61.4]; Ubiquitin-2 like Rad60 SUMO-like [PF13881.8, score=57.1]; Ubiquitin-like domain [PF18037.3, score=52.8]; DUF2407 ubiquitin-like domain [PF10302.11, score=45.9]; Silencing defective 2 N-terminal ubiquitin domain [PF13019.8, score=32.4]; FlgD Ig-like domain [PF13860.8, score=31.0]; Toluene-4-monooxygenase system protein B (TmoB) [PF06234.14, score=30.1]; Ubiquitin-like domain [PF18036.3, score=27.4]; Crinkler effector protein N-terminal domain [PF20147.1, score=26.9]; Staphylokinase/Streptokinase family [PF02821.18, score=25.8]; Cilia- and flagella-associated protein 298 [PF11069.10, score=25.6]; UDP-glucose:Glycoprotein Glucosyltransferase [PF06427.13, score=21.2]; GDYXXLXY protein [PF14345.8, score=21.1]; Domain of Unknown Function with PDB structure (DUF3861) [PF12977.9, score=20.4]; Protein of unknown function (DUF969) [PF06149.14, score=18.8]} {Human: ENSG00000150991, UBC, ubiquitin C, [RH, Score=596, Expect=0.0]} {Mouse: ENSMUSG00000019505, Ubb, ubiquitin B, [RH, Score=596, Expect=0.0]} {Dmel: FBgn0086558, Ubi-p5E, Ubiquitin-5E, [Score=596, Expect=0.0]} {Celegans: WBGene00006727, ubq-1, Polyubiquitin-A Ubiquitin Ubiquitin-related, [Score=585, Expect=0.0]} {Smed: dd_Smed_v6_1697_0_2, dd_Smed_v6_1697_0_2, [RH, Score=164, Expect=2e-51]} {RNA1509_199} {RNA1310_58147} {RNA815_13907}
7. MligTC455_34911 1974 41.12 Mlig455_018730, Mlig455_018752, Mlig455_018920

Neo: Irradiation

Age: -

Region-specific R4: 2.878

Region-enriched R4: 2.803/0.00000

Regeneration-downregulated R4: -1.908

Regeneration-depleted R4: -1.908

 ACYP1 0.962 - - - - 0.962 -

Mlig455_018730 {REF} {Length: 1504} {TRANSSPLICED} {Pfam: Acylphosphatase [PF00708.20, score=81.0]} {Human: ENSG00000119640, ACYP1, acylphosphatase 1, [RH, Score=105, Expect=5e-30]} {Mouse: ENSMUSG00000008822, Acyp1, acylphosphatase 1, erythrocyte (common) type, [RH, Score=103, Expect=1e-29]} {Dmel: FBgn0085190, CG34161, [RH, Score=92.4, Expect=5e-25]} {Smed: dd_Smed_v6_4021_0_2, dd_Smed_v6_4021_0_2, [RH, Score=87.4, Expect=2e-23]} {RNA1509_9648} {RNA1310_21302, RNA1509_9648} {RNA1509_9648, RNA815_22307}

Mlig455_018752 {REF} {Length: 735} {TRANSSPLICED} {Pfam: Acylphosphatase [PF00708.20, score=77.5]} {Human: ENSG00000119640, ACYP1, acylphosphatase 1, [Score=98.6, Expect=6e-27]} {Mouse: ENSMUSG00000008822, Acyp1, acylphosphatase 1, erythrocyte (common) type, [Score=97.1, Expect=7e-27]} {Dmel: FBgn0085190, CG34161, [RH, Score=92.4, Expect=5e-25]} {Smed: dd_Smed_v6_4021_0_2, dd_Smed_v6_4021_0_2, [Score=80.5, Expect=9e-21]} {RNA1509_46869} {RNA1310_21302, RNA1509_46869} {RNA1509_46869, RNA815_22307}

Mlig455_018920 {REF} {Length: 874} {TRANSSPLICED} {Pfam: Acylphosphatase [PF00708.20, score=81.0]} {Human: ENSG00000119640, ACYP1, acylphosphatase 1, [RH, Score=105, Expect=5e-30]} {Mouse: ENSMUSG00000008822, Acyp1, acylphosphatase 1, erythrocyte (common) type, [RH, Score=103, Expect=1e-29]} {Dmel: FBgn0085190, CG34161, [RH, Score=92.8, Expect=4e-25]} {Smed: dd_Smed_v6_4021_0_2, dd_Smed_v6_4021_0_2, [RH, Score=87.4, Expect=2e-23]} {RNA1509_9648} {RNA1310_21302} {RNA815_22307}
8. MligTC455_01590 42 0.87 Mlig455_017441

Neo: -

Age: -

 0.96 - - - - 0.960 - Mlig455_017441 {REF} {Length: 266} {NoTransDecoderORF}
9. MligTC455_41728 30 0.62 Mlig455_027804

Neo: -

Age: logFC(26M/2M)=-0.380

 KATNAL2 0.958 - - - - 0.958 - Mlig455_027804 {REF} {Length: 2299} {TRANSSPLICED} {Pfam: ATPase family associated with various cellular activities (AAA) [PF00004.31, score=126.6]; AAA+ lid domain [PF17862.3, score=47.1]; LisH [PF08513.13, score=26.4]; Holliday junction DNA helicase RuvB P-loop domain [PF05496.14, score=22.3]; AAA ATPase domain [PF13191.8, score=19.5]; TIP49 P-loop domain [PF06068.15, score=19.1]; AAA domain (dynein-related subfamily) [PF07728.16, score=18.8]; Magnesium chelatase, subunit ChlI [PF01078.23, score=18.1]} {Human: ENSG00000167216, KATNAL2, katanin catalytic subunit A1 like 2, [RH, Score=609, Expect=0.0]} {Mouse: ENSMUSG00000025420, Katnal2, katanin p60 subunit A-like 2, [RH, Score=609, Expect=0.0]} {Dmel: FBgn0040208, Kat60, Katanin 60, [Score=279, Expect=4e-86]} {Celegans: WBGene00003183, mei-1, Meiotic spindle formation protein mei-1, [Score=260, Expect=3e-80]} {Smed: dd_Smed_v6_14853_0_1, dd_Smed_v6_14853_0_1, [RH, Score=646, Expect=0.0]} {RNA1509_14139, RNA1509_56577} {RNA1310_9263.1, RNA1509_56577} {RNA1509_56577, RNA815_5637}
10. MligTC455_28518 184 3.84 Mlig455_068682

Neo: -

Age: Down-Down-Up

 ANKRD50 0.956 - - - - 0.956 - Mlig455_068682 {REF} {Length: 5526} {TRANSSPLICED} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=230.6]; Ankyrin repeats (many copies) [PF13637.8, score=137.6]; Ankyrin repeat [PF00023.32, score=109.8]; Ankyrin repeats (many copies) [PF13857.8, score=106.4]; Ankyrin repeat [PF13606.8, score=102.1]; Mab-21 protein [PF03281.16, score=30.7]} {Human: ENSG00000151458, ANKRD50, ankyrin repeat domain 50, [Score=158, Expect=1e-38]} {Mouse: ENSMUSG00000044864, Ankrd50, ankyrin repeat domain 50, [Score=157, Expect=2e-38]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=135, Expect=8e-33]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=134, Expect=1e-31]} {Smed: dd_Smed_v6_6201_0_1, dd_Smed_v6_6201_0_1, [Score=140, Expect=6e-34]} {RNA1509_18101} {RNA1310_3035.1, RNA1509_18101} {RNA1509_18101, RNA815_4096}
11. MligTC455_04021 34 0.7 Mlig455_036549, Mlig455_057818

Neo: -

Age: -

 0.955 - - - - 0.955 -

Mlig455_036549 {REF} {Length: 1886} {Pfam: RNase H [PF00075.26, score=46.3]; Reverse transcriptase-like [PF13456.8, score=20.6]} {RNA1310_118653}

Mlig455_057818 {REF} {Length: 1933} {Pfam: RNase H [PF00075.26, score=46.3]; Reverse transcriptase-like [PF13456.8, score=20.6]} {RNA1310_82648}
12. MligTC455_40647 511 10.64 Mlig455_055717

Neo: -

Age: -

 TOR1B 0.955 - - - - 0.955 - Mlig455_055717 {REF} {Length: 3266} {Pfam: Torsin [PF06309.13, score=237.4]; AAA domain (dynein-related subfamily) [PF07728.16, score=46.2]; ATPase family associated with various cellular activities (AAA) [PF00004.31, score=41.2]; AAA domain [PF13401.8, score=37.2]; AAA domain (Cdc48 subfamily) [PF07724.16, score=30.9]; Sigma-54 interaction domain [PF00158.28, score=27.0]; Cytidylate kinase [PF02224.20, score=25.1]; PhoH-like protein [PF02562.18, score=24.3]; RNA helicase [PF00910.24, score=22.0]; Type III restriction enzyme, res subunit [PF04851.17, score=21.3]; IstB-like ATP binding protein [PF01695.19, score=21.2]; AAA domain [PF13238.8, score=19.1]; Threonylcarbamoyl adenosine biosynthesis protein TsaE [PF02367.19, score=18.8]; NB-ARC domain [PF00931.24, score=18.5]} {Human: ENSG00000136816, TOR1B, torsin family 1 member B, [Score=201, Expect=3e-58]; ENSG00000136827, TOR1A, torsin family 1 member A, [Score=196, Expect=2e-56]} {Mouse: ENSMUSG00000026848, Tor1b, torsin family 1, member B, [Score=202, Expect=7e-59]} {Dmel: FBgn0025615, Torsin, [Score=142, Expect=4e-37]} {Celegans: WBGene00003870, ooc-5, Torsin-like protein, [Score=192, Expect=2e-55]} {Smed: dd_Smed_v6_7561_0_1, dd_Smed_v6_7561_0_1, [Score=173, Expect=2e-48]} {RNA1509_20868} {RNA1310_9112.2} {RNA815_7575}
13. MligTC455_36853 202 4.21 Mlig455_043548

Neo: -

Age: -

 CCDC191 0.952 - - - - 0.952 - Mlig455_043548 {REF} {Length: 4123} {TRANSSPLICED} {Human: ENSG00000163617, CCDC191, coiled-coil domain containing 191, [Score=115, Expect=1e-25]} {Mouse: ENSMUSG00000022701, Ccdc191, coiled-coil domain containing 191, [RH, Score=95.9, Expect=1e-19]} {Dmel: FBgn0031496, CG17258, [RH, Score=56.2, Expect=1e-07]} {Smed: dd_Smed_v6_8967_0_2, dd_Smed_v6_8967_0_2, [Score=136, Expect=1e-32]} {RNA1509_15334, RNA1509_39248} {RNA1310_1501.1, RNA1509_15334} {RNA1509_15334, RNA815_1513}
14. MligTC455_47361 1348 28.08 Mlig455_010891, Mlig455_033205

Neo: Int S/G2/M

Age: logFC(26M/2M)=0.649

 ECI1 0.951 - - - - 0.951 -

Mlig455_010891 {REF} {Length: 1222} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=106.3]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=29.3]} {Human: ENSG00000167969, ECI1, enoyl-CoA delta isomerase 1, [Score=108, Expect=2e-27]} {Mouse: ENSMUSG00000024132, Eci1, enoyl-Coenzyme A delta isomerase 1, [Score=111, Expect=2e-28]} {Dmel: FBgn0032160, CG4598, [Score=107, Expect=4e-27]} {Celegans: WBGene00001154, ech-5, Enoyl-CoA Hydratase, [Score=67.0, Expect=1e-12]} {Smed: dd_Smed_v6_3553_0_1, dd_Smed_v6_3553_0_1, [Score=74.3, Expect=3e-15]} {RNA1509_13854} {RNA1310_28320.1, RNA1509_13854} {RNA1509_13854, RNA815_17367}

Mlig455_033205 {REF} {Length: 2143} {TRANSSPLICED} {Pfam: Enoyl-CoA hydratase/isomerase [PF00378.22, score=81.1]; Enoyl-CoA hydratase/isomerase [PF16113.7, score=19.9]} {Human: ENSG00000167969, ECI1, enoyl-CoA delta isomerase 1, [Score=67.4, Expect=6e-12]} {Mouse: ENSMUSG00000024132, Eci1, enoyl-Coenzyme A delta isomerase 1, [Score=67.0, Expect=6e-12]} {Dmel: FBgn0032161, CG4594, [Score=68.2, Expect=3e-12]} {RNA1509_13854} {RNA1310_19425.1} {RNA815_17367}

Refine r cutoff to:    Show

Berezikov Lab - 2020-2021 © ERIBA