TomoSeq data search

Data search

Results for MligTC455_32595

Cluster

Total UMI counts

Global CPM

Transcripts

Categories

Human homolog

Annotation

MligTC455_32595

41

0.86

Mlig455_053520

Neo: -

Age: -

BCL3

Mlig455_053520 {REF} {Length: 5853} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=33.6]; Ankyrin repeats (3 copies) [PF12796.9, score=26.9]; Ankyrin repeat [PF00023.32, score=26.6]; Ankyrin repeat [PF13606.8, score=22.1]} {Human: ENSG00000069399, BCL3, B cell CLL/lymphoma 3, [Score=51.2, Expect=4e-06]} {Mouse: ENSMUSG00000053175, Bcl3, B cell leukemia/lymphoma 3, [Score=50.1, Expect=9e-06]} {Smed: dd_Smed_v6_10835_0_1, dd_Smed_v6_10835_0_1, [Score=51.2, Expect=2e-06]} {RNA1509_41588} {RNA1310_16324} {RNA815_18703}

Cumulative graph for MligTC455_32595

Region-enriched expression

Region	logFC	logCPM	Pvalue	FDR	Specificity
RegionR1	-4.779	1.13	0.99958	1.00000
RegionR2	2.74	1.13	0.08643	0.36157
RegionR3	2.107	1.13	0.07314	0.47946
RegionR4	-0.245	1.13	0.81597	1.00000
RegionR5	-2.138	1.13	0.99348	1.00000
RegionR6	2.031	1.13	0.11113	0.60848
RegionR7	-2.458	1.13	0.99965	1.00000
RegionR8	2.741	1.13	0.13692	0.67661

Regeneration-enriched expression

Region	logFC	logCPM	PValue	FDR	Specificity
RegenerationR1	2.601	1.13	0.99987	1.00000
RegenerationR2	1.699	1.13	0.07276	0.43757
RegenerationR3	1.158	1.13	0.28979	0.72161
RegenerationR4	2.108	1.13	0.08181	0.45213
RegenerationR5	3.975	1.13	0.00199	0.07684
RegenerationR6	0.963	1.13	0.41438	0.74710
RegenerationBL	1.966	1.13	0.28519	0.64692
RegenerationTP	2.199	1.13	0.31177	0.75637

Genes with expression patterns similar to MligTC455_32595

Nr.	Cluster	Total UMI counts	Global CPM	Transcripts	Categories	Human homolog	Σ Spearman correlations	Int1	Int2	Int3	Reg1	Reg2	Reg3	Annotation
1.	MligTC455_32595	41	0.86	Mlig455_053520	Neo: - Age: -	BCL3	2	-	-	-	-	1.000	1.000	Mlig455_053520 {REF} {Length: 5853} {Pfam: Ankyrin repeats (many copies) [PF13637.8, score=33.6]; Ankyrin repeats (3 copies) [PF12796.9, score=26.9]; Ankyrin repeat [PF00023.32, score=26.6]; Ankyrin repeat [PF13606.8, score=22.1]} {Human: ENSG00000069399, BCL3, B cell CLL/lymphoma 3, [Score=51.2, Expect=4e-06]} {Mouse: ENSMUSG00000053175, Bcl3, B cell leukemia/lymphoma 3, [Score=50.1, Expect=9e-06]} {Smed: dd_Smed_v6_10835_0_1, dd_Smed_v6_10835_0_1, [Score=51.2, Expect=2e-06]} {RNA1509_41588} {RNA1310_16324} {RNA815_18703}
2.	MligTC455_10034	22	0.46	Mlig455_061657	Neo: - Age: Up-Up-Down		0.983	-	-	-	-	0.983	-	Mlig455_061657 {REF} {Length: 2075} {Pfam: Amiloride-sensitive sodium channel [PF00858.26, score=40.8]} {Smed: dd_Smed_v6_9633_0_1, dd_Smed_v6_9633_0_1, [Score=50.4, Expect=6e-08]} {RNA1509_22651} {RNA1310_622.1} {RNA815_2514.1}
3.	MligTC455_29941	78	1.63	Mlig455_060382	Neo: - Age: Up-Down-Up, logFC(26M/2M)=0.608	EEFSEC	0.963	-	-	-	-	0.963	-	Mlig455_060382 {REF} {Length: 3426} {TRANSSPLICED} {Pfam: Elongation factor Tu GTP binding domain [PF00009.29, score=97.7]; ERCC4 domain [PF02732.17, score=62.1]; Elongation factor Tu domain 2 [PF03144.27, score=29.4]; 50S ribosome-binding GTPase [PF01926.25, score=26.4]; Signal recognition particle receptor beta subunit [PF09439.12, score=21.6]} {Human: ENSG00000132394, EEFSEC, eukaryotic elongation factor, selenocysteine-tRNA specific, [Score=427, Expect=9e-138]; ENSG00000284869, EEFSEC, eukaryotic elongation factor, selenocysteine-tRNA specific, [Score=427, Expect=9e-138]} {Mouse: ENSMUSG00000033216, Eefsec, eukaryotic elongation factor, selenocysteine-tRNA-specific, [Score=420, Expect=6e-136]} {Dmel: FBgn0034627, eEFSec, eukaryotic translation elongation factor, selenocysteine-specific, [Score=365, Expect=2e-115]} {Celegans: WBGene00008133, efsc-1, Eukaryotic Elongation Factor, SelenoCysteine-tRNA-specific, [Score=184, Expect=1e-49]} {Smed: dd_Smed_v6_4481_0_1, dd_Smed_v6_4481_0_1, [Score=388, Expect=1e-123]} {RNA1509_11359} {RNA1310_13242.1} {RNA815_31217}
4.	MligTC455_52790	69	1.44	Mlig455_031435	Neo: - Age: Down-Up-Up, logFC(26M/2M)=1.468	KY	0.959	-	-	-	-	0.959	-	Mlig455_031435 {REF} {Length: 2924} {Pfam: Transglutaminase-like superfamily [PF01841.21, score=54.4]} {Human: ENSG00000174611, KY, kyphoscoliosis peptidase, [RH, Score=190, Expect=2e-51]} {Mouse: ENSMUSG00000035606, Ky, kyphoscoliosis peptidase, [RH, Score=190, Expect=2e-51]} {Dmel: FBgn0050147, Hil, Hillarin, [Score=97.4, Expect=1e-20]} {Celegans: WBGene00003089, ltd-1, Lim and Transglutaminase Domain; Lim and transglutaminase domain protein, [Score=96.3, Expect=8e-21]} {Smed: dd_Smed_v6_1109_0_1, dd_Smed_v6_1109_0_1, [Score=139, Expect=7e-34]} {RNA1509_41238} {RNA1310_9626} {RNA815_5945}
5.	MligTC455_32596	17	0.36	Mlig455_061002	Neo: - Age: Down-Down-Down, logFC(26M/2M)=-0.763	ANK3	0.956	-	-	-	-	0.956	-	Mlig455_061002 {REF} {Length: 4925} {Pfam: Ankyrin repeats (3 copies) [PF12796.9, score=200.4]; Ankyrin repeats (many copies) [PF13637.8, score=140.6]; Ankyrin repeat [PF13606.8, score=118.7]; Ankyrin repeat [PF00023.32, score=111.5]; Ankyrin repeats (many copies) [PF13857.8, score=108.3]} {Human: ENSG00000151150, ANK3, ankyrin 3, [Score=148, Expect=5e-35]; ENSG00000029534, ANK1, ankyrin 1, [Score=148, Expect=3e-35]; ENSG00000145362, ANK2, ankyrin 2, [Score=147, Expect=9e-35]} {Mouse: ENSMUSG00000031543, Ank1, ankyrin 1, erythroid, [Score=142, Expect=2e-33]; ENSMUSG00000032826, Ank2, ankyrin 2, brain, [Score=141, Expect=2e-33]; ENSMUSG00000069601, Ank3, ankyrin 3, epithelial, [Score=141, Expect=3e-33]} {Dmel: FBgn0261788, Ank2, Ankyrin 2, [Score=164, Expect=3e-40]} {Celegans: WBGene00006780, unc-44, AO66 ankyrin, [Score=170, Expect=2e-42]} {Smed: dd_Smed_v6_2072_0_8, dd_Smed_v6_2072_0_8, [Score=169, Expect=5e-42]} {RNA1509_41588} {RNA1310_16324} {RNA815_18703}
6.	MligTC455_38400	32	0.66	Mlig455_049024	Neo: - Age: -		0.954	-	-	-	-	0.954	-	Mlig455_049024 {REF} {Length: 2686} {RNA1509_47418} {RNA1310_49507}
7.	MligTC455_25851	96	1.99	Mlig455_049456	Neo: - Age: - Region-enriched R7: 3.223/0.03382		0.95	-	-	-	-	0.950	-	Mlig455_049456 {REF} {Length: 2249} {TRANSSPLICED} {NoTransDecoderORF} {RNA1509_45306} {RNA1310_32030.1} {RNA815_31676}

Berezikov Lab - 2020-2021 © ERIBA